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Pairtools: from sequencing data to chromosome contacts

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.13.528389Source: DataRank Database

Pairtools: from sequencing data to chromosome contacts is a research paper published in bioRxiv (Cold Spring Harbor Laboratory) (2023). On theSindex it has a DataRank of 0.683. It has been cited 94 times.

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0.683DataRank · unranked

Scored on demand from live citation data

Open Access94 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (4 grants)OA: greenTopics (32)IDs (PubMed, OpenAlex)SDGs (2)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 100%Citation Network 0%

Base Score Contribution

0.683

From this paper's citation signal

Citation Network Contribution

Citation network not refreshed for this result

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Authors (8)

Nezar Abdennur ORCID,Geoffrey Fudenberg ORCID,Ilya M. Flyamer ORCID,Aleksandra A. Galitsyna ORCID,Anton Goloborodko ORCID

Live enrichment

PubMed:36824968 OpenAlex:https://openalex.org/W4320913817

National Institutes of Health

Grant: 5UM1HG011536-03

Center for 3D Structure and Physics of the Genome

National Institutes of Health

Grant: 5R35GM143116-03

Genomes in 3D: from maps to mechanisms

NIGMS NIH HHS

Grant: R35 GM143116

NHGRI NIH HHS

Grant: UM1 HG011536

greenLicense: cc-by

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2023/02/15/2023.02.13.528389.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/2023.02.13.528389

repositoryhttps://doi.org/10.1101/2023.02.13.528389

repositoryhttps://pubmed.ncbi.nlm.nih.gov/36824968

Fields of Study

Genomics and Phylogenetic StudiesChromosomal and Genetic VariationsGenomics and Chromatin Dynamics0301 basic medicine0206 medical engineering02 engineering and technology03 medical and health sciences

Keywords

ChromosomeDNA sequencingComputational biologyBiologyChromosome conformation captureComputer scienceGenomeSet (abstract data type)GeneticsGeneChromosome pairsDNA fragment ligationQuality controlHigh-Throughput Nucleotide SequencingChromosome MappingGenomicsSequence Analysis, DNAArticleChromosomesData processingSequence alignmentHumansDNA librariesComputer softwareSoftware

Sustainable Development Goals

SDG 3: 3. Good healthSDG 0: Industry, innovation and infrastructure