🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Nezar Abdennur

University of Massachusetts Chan Medical School

ORCID: 0000-0001-5814-0864
Agricultural and Biological SciencesBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
4.1Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

Nature Communications(2022)10.1038/s41467-022-29697-4
Top 7%
3.4DataRank
Top 7%183 citations

Andrew J. Schroeder, Koray Kırlı, Andrea Cosolo, Clara Bakker, Luisa Mercado +18 more

Papers

Driven by 13 papers — median percentile 82. Top paper: “Ultrastructural Details of Mammalian Chromosome Architecture”.

Ultrastructural Details of Mammalian Chromosome Architecture

Molecular Cell(2020)10.1016/j.molcel.2020.03.003
N/A
8.7DataRank · unranked
667 citations

Sameer Abraham, Sergey V. Venev, Nezar Abdennur, Johan H. Gibcus, Tsung-Han S. Hsieh +7 more

The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

Nature Communications(2022)10.1038/s41467-022-29697-4
Top 7%
3.4DataRank
Top 7%183 citations

Andrew J. Schroeder, Koray Kırlı, Andrea Cosolo, Clara Bakker, Luisa Mercado +18 more

Bioframe: operations on genomic intervals in Pandas dataframes

Bioinformatics(2024)10.1093/bioinformatics/btae088
N/A
1.0DataRank · unranked
49 citations

Nezar Abdennur, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton Goloborodko +3 more

Pairtools: From sequencing data to chromosome contacts

PLoS Computational Biology(2024)10.1371/journal.pcbi.1012164
N/A
0.815DataRank · unranked
228 citations

Nezar Abdennur, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton Goloborodko +3 more

Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers

Nature Structural & Molecular Biology(2022)10.1038/s41594-022-00892-7
N/A
0.741DataRank · unranked
139 citations

Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A. Mirny +2 more

The 4D Nucleome Data Portal: a resource for searching and visualizing curated nucleomics data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.14.464435
Top 29%
0.690DataRank
Top 29%13 citations

Andrew J. Schroeder, Koray Kırlı, Andrea Cosolo, Clara Bakker, Luisa Mercado +18 more

Pairtools: from sequencing data to chromosome contacts

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.13.528389
N/A
0.683DataRank · unranked
94 citations

Nezar Abdennur, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton Goloborodko +3 more

A non-coding variant linked to metabolic obesity with normal weight affects actin remodelling in subcutaneous adipocytes

Nature Metabolism(2023)10.1038/s42255-023-00807-w
N/A
0.546DataRank · unranked
37 citations

Samantha Laber, Nicholas A. Sinnott-Armstrong, Débora R. Sobreira, Sophie Strobel, Thiago M. Batista +21 more

Any notebook served: authoring and sharing reusable interactive widgets

Proceedings of the Python in Science Conferences(2024)10.25080/nrpv2311
N/A
0.104DataRank · unranked
1 citations

Nils Gehlenborg, Nezar Abdennur, Trevor Manz

Cooltools: enabling high-resolution Hi-C analysis in Python

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.31.514564
N/A
0DataRank · unranked
115 citations

Nezar Abdennur, Sameer Abraham, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna +5 more

Heterochromatin diversity modulates genome compartmentalization and loop extrusion barriers

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.05.455340
N/A
0DataRank · unranked
20 citations

Nezar Abdennur, Maxim Imakaev, Neil Chowdhury, Sriharsa Pradhan, Leonid A. Mirny +2 more

Bigtools: a high-performance BigWig and BigBed library in Rust

Bioinformatics(2024)10.1093/bioinformatics/btae350
N/A
0DataRank · unranked
8 citations

Nezar Abdennur, Jack Huey

Bigtools: a high-performance BigWig and BigBed library in Rust

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.06.579187
N/A
0DataRank · unranked
1 citations

Nezar Abdennur, Jack Huey