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A proximity proteomics pipeline with improved reproducibility and throughput

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.11.536358Source: DataRank Database

A proximity proteomics pipeline with improved reproducibility and throughput is a research paper published in bioRxiv (Cold Spring Harbor Laboratory) (2023). On theSindex it has a DataRank of 0.486. It has been cited 12 times, with 12 citing works in its 1-hop citation network.

N/A

0.486DataRank · unranked

Scored on demand from live citation data

Open Access12 citations · 12 citing works in its network

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (3 grants)OA: greenTopics (36)IDs (PubMed, OpenAlex)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 79%Citation Network 21%

Base Score Contribution

0.385

From this paper's citation signal

Citation Network Contribution

0.101

From 9 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 12 citers.

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Authors (15)

Qiongyu Li ORCID,Benjamin J. Polacco ORCID,Trupti Patil ORCID,Aaron Marley,Helene Foussard ORCID

Live enrichment

PubMed:37090610 OpenAlex:https://openalex.org/W4365144750

National Institutes of Health

Grant: 5P01HL146366-04

Combinatorial Regulation of Gene Networks During Cardiac Development and Disease

National Institutes of Health

Grant: 5R37DA045657-04

Mechanistic insights into LSD actions at 5-HT2A serotonin receptors

National Institutes of Health

Grant: 5R01DA056354-04

Spatiotemporal signaling and trafficking of the mu-opioid receptor

greenLicense: cc-by-nd

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2023/04/12/2023.04.11.536358.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/2023.04.11.536358

repositoryhttps://doi.org/10.1101/2023.04.11.536358

repositoryhttps://pubmed.ncbi.nlm.nih.gov/37090610

Fields of Study

Biotin and Related StudiesAdvanced Proteomics Techniques and ApplicationsAdvanced Biosensing Techniques and Applications0301 basic medicine0303 health sciences03 medical and health sciences

Keywords

Pipeline (software)ThroughputReproducibilityComputer scienceProteomicsComputational biologyChemistryBiologyChromatographyTelecommunicationsOperating system570Medicine (General)ProteomeQH301-705.5MethodReproducibility of ResultsArticleMass SpectrometryG Protein-Coupled ReceptorSubcellular ProteomicsR5-920HEK293 CellsProtein–Protein Interaction616APEX2-based Proximity LabelingHumansProximity ProteomicsBiotinylationBiology (General)