Benjamin J. Polacco

Also affiliated with Gladstone Institutes, University of California, San Francisco, Quantitative BioSciences

MedicineImmunology and MicrobiologyChemistryBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile

0.447Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A Perturbation Cell Atlas of Human Induced Pluripotent Stem Cells

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.03.621734

Top 42%

0.447DataRank

Top 42%8 citations

Yesh Doctor, Amir Dailamy, Antoine Forget, Yi-Hung Lee, Becky Chinn +18 more

Papers

Driven by 31 papers — median percentile 58. Top paper: “A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing”.

A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.22.002386

N/A

14.3DataRank · unranked

456 citations

Gwendolyn M. Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Matthew J. O’Meara +95 more

The Global Phosphorylation Landscape of SARS-CoV-2 Infection

Cell(2020)10.1016/j.cell.2020.06.034

N/A

10.3DataRank · unranked

1152 citations

Danish Memon, Bjoern Meyer, Kris M. White, Veronica V. Rezelj, Miguel Correa Marrero +73 more

Evolution of enhanced innate immune evasion by the SARS-CoV-2 B.1.1.7 UK variant

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.06.446826

N/A

5.0DataRank · unranked

107 citations

Mehdi Bouhaddou, Ann‐Kathrin Reuschl, Lorena Zuliani‐Alvarez, Benjamin J. Polacco, Adrian Pelin +28 more

SARS-CoV-2 variants evolve convergent strategies to remodel the host response

Cell(2023)10.1016/j.cell.2023.08.026

N/A

2.1DataRank · unranked

113 citations

Ann-Kathrin Reuschl, Benjamin J. Polacco, Lucy G. Thorne, Manisha R. Ummadi, Chengjin Ye +88 more

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing

Nature(2020)10.1038/s41586-020-2286-9

N/A

1.3DataRank · unranked

4829 citations

Gwendolyn M. Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Kris M. White +95 more

Proteomic and genetic analyses of influenza A viruses identify pan-viral host targets

Nature Communications(2023)10.1038/s41467-023-41442-z

N/A

1.2DataRank · unranked

62 citations

Michael McGregor, Mehdi Bouhaddou, Benjamin J. Polacco, Eun‐Young Kim, Thông Nguyen +50 more

Evolution of enhanced innate immune evasion by SARS-CoV-2

Nature(2021)10.1038/s41586-021-04352-y

N/A

0.900DataRank · unranked

402 citations

Mehdi Bouhaddou, Ann-Kathrin Reuschl, Lorena Zuliani-Alvarez, Benjamin J. Polacco, Adrian Pelin +41 more

Resistance to ATR Inhibitors Is Mediated by Loss of the Nonsense-Mediated Decay Factor UPF2

Cancer Research(2022)10.1158/0008-5472.can-21-4335

N/A

0.884DataRank · unranked

28 citations

Huadong Chen, Yagmur U. Doruk, Tess Williamson, Benjamin J. Polacco, Andrew S. McNeal +13 more

Profiling the proximal proteome of the activated μ-opioid receptor

Nature Chemical Biology(2024)10.1038/s41589-024-01588-3

N/A

0.862DataRank · unranked

34 citations

Braden T. Lobingier, Emily E. Blythe, Nohely Abreu, Prachi Khare, Matthew K. Howard +12 more

De novo protein identification in mammalian sperm using in situ cryoelectron tomography and AlphaFold2 docking

Cell(2023)10.1016/j.cell.2023.09.017

N/A

0.661DataRank · unranked

81 citations

Momoko Shiozaki, Kelsey M. Haas, Will M. Skinner, Shumei Zhao, Caiying Guo +8 more

Impact of SARS-CoV-2 ORF6 and its variant polymorphisms on host responses and viral pathogenesis

Cell Host & Microbe(2023)10.1016/j.chom.2023.08.003

N/A

0.655DataRank · unranked

78 citations

Anastasija Čupić, Chengjin Ye, Soner Yildiz, Mehdi Bouhaddou, Nicholas A. Crossland +35 more

Global landscape of the host response to SARS-CoV-2 variants reveals viral evolutionary trajectories

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.19.512927

N/A

0.524DataRank · unranked

14 citations

Ann‐Kathrin Reuschl, Benjamin J. Polacco, Lucy G. Thorne, Manisha R. Ummadi, Chengjin Ye +72 more

Signaling Modulation Mediated by Ligand Water Interactions with the Sodium Site at μOR

ACS Central Science(2024)10.1021/acscentsci.4c00525

N/A

0.517DataRank · unranked

13 citations

Nokomis Ramos‐Gonzalez, Qiongyu Li, Briana L. Sobecks, Deniz Aydın, Alexander S. Powers +14 more

Predicted mechanistic impacts of human protein missense variants

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.29.596373

N/A

0.515DataRank · unranked

30 citations

Marc Müller, Senthil Selvaraj, Diogo Manoel, James Stephenson, Catarina Gonçalves +11 more

A proximity proteomics pipeline with improved reproducibility and throughput

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.11.536358

N/A

0.486DataRank · unranked

12 citations

Qiongyu Li, Benjamin J. Polacco, Trupti Patil, Aaron Marley, Helene Foussard +10 more

A proximity proteomics pipeline with improved reproducibility and throughput

Molecular Systems Biology(2024)10.1038/s44320-024-00049-2

N/A

0.464DataRank · unranked

21 citations

Qiongyu Li, Benjamin J. Polacco, Trupti Patil, Aaron Marley, Helene Foussard +10 more

A Perturbation Cell Atlas of Human Induced Pluripotent Stem Cells

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.03.621734

Top 42%

0.447DataRank

Top 42%8 citations

Yesh Doctor, Amir Dailamy, Antoine Forget, Yi-Hung Lee, Becky Chinn +18 more

Protein Interaction Map of APOBEC3 Enzyme Family Reveals Deamination-Independent Role in Cellular Function

Molecular & Cellular Proteomics(2024)10.1016/j.mcpro.2024.100755

N/A

0.416DataRank · unranked

15 citations

Arun Kumar Annan Sudarsan, Arzhang Shayeganmehr, Érika Prando Munhoz, R. Lao, Amit Gaba +8 more

Quantitative Proteomic Analysis Reveals apoE4-Dependent Phosphorylation of the Actin-Regulating Protein VASP

Molecular & Cellular Proteomics(2023)10.1016/j.mcpro.2023.100541

N/A

0.381DataRank · unranked

10 citations

Samuel J. Lord, Yuan Zhou, Gwendolyn M. Jang, Benjamin J. Polacco, Manon Eckhardt +10 more

De novo protein identification in mammalian sperm using high-resolution in situ cryo-electron tomography

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.28.510016

N/A

0.331DataRank · unranked

4 citations

Momoko Shiozaki, Kelsey M. Haas, Shumei Zhao, Caiying Guo, Benjamin J. Polacco +6 more

Protein interaction map of APOBEC3 enzyme family reveals deamination-independent role in cellular function

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.06.579137

N/A

0.225DataRank · unranked

3 citations

Arun Kumar Annan Sudarsan, Arzhang Shayeganmehr, Érika Prando Munhoz, R. Lao, Amit Gaba +8 more

Integrative multi-omics analysis in vivo identifies influenza virus host factors

iScience(2025)10.1016/j.isci.2025.113644

N/A

0.208DataRank · unranked

3 citations

Benjamin J. Polacco, Manon Eckhardt, Max W. Chang, Carles Martínez‐Romero, Kayla Adkins-Travis +29 more

Inference of differential kinase interaction networks with KINference

Bioinformatics(2025)10.1093/bioinformatics/btaf349

N/A

0.208DataRank · unranked

3 citations

Nevan J. Krogan, Benjamin J. Polacco, David B. Blumenthal, Nicolai Meyerhöfer

Protocol for mapping differential protein-protein interaction networks using affinity purification-mass spectrometry

STAR Protocols(2024)10.1016/j.xpro.2024.103286

N/A

0.190DataRank · unranked

2 citations

Manisha R. Ummadi, Gwendolyn M. Jang, Yennifer Delgado, Sara K. Makanani, Kareem Alba +13 more

Malaria exposure remodels the plasma proteome of Ghanaian children

BMC Infectious Diseases(2025)10.1186/s12879-025-10495-4

N/A

0DataRank · unranked

2 citations

Charles Ochieng’ Olwal, Andrea Fossati, Nancy Nyakoe, Jacqueline M. Fabius, Martin Gordon +7 more

Data from Resistance to ATR Inhibitors Is Mediated by Loss of the Nonsense-Mediated Decay Factor UPF2

(2023)10.1158/0008-5472.c.6513989

N/A

0DataRank · unranked

0 citations

Huadong Chen, Yagmur U. Doruk, Tess Williamson, Benjamin J. Polacco, Andrew S. McNeal +13 more

Functional diversification of the cephalopod proteome by RNA-editing

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.15.694494

N/A

0DataRank · unranked

1 citations

Alicia Richards, Einar Krogsaeter, Benjamin J. Polacco, Martin Gordon, Erica Stevenson +9 more

Profiling the proximal proteome of the mu opioid receptor identifies novel regulators of receptor signaling and trafficking

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.28.486115

N/A

0DataRank · unranked

8 citations

Braden T. Lobingier, Emily E. Blythe, Nohely Abreu, Prachi Khare, Matthew K. Howard +12 more

Data-independent acquisition protease-multiplexing enables increased proteome sequence coverage across multiple fragmentation modes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.15.452565

N/A

0DataRank · unranked

1 citations

Kuei-Ho Chen, Damien B. Wilburn, Erica Stevenson, Benjamin J. Polacco, Brian C. Searle +2 more

A strategy for large-scale comparison of evolutionary- and reaction-based classifications of enzyme function

Database(2020)10.1093/database/baaa034

N/A

0DataRank · unranked

9 citations

Shoshana Brown, David Mischel, Benjamin J. Polacco, Patricia C. Babbitt, Gemma L. Holliday

Mapping Differential Protein-Protein Interaction Networks using Affinity Purification Mass Spectrometry

PubMed(2024)10.48550/arxiv.2405.09699

N/A

0DataRank · unranked

0 citations

Manisha R. Ummadi, Gwendolyn M. Jang, Yennifer Delgado, Sara K. Makanani, Sophie F. Blanc +12 more

Benjamin J. Polacco

Indexed papers

Top data-sharing exemplar

Papers