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Gene regulatory network inference from CRISPR perturbations in primary CD4+ T cells elucidates the genomic basis of immune disease

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.17.557749Source: DataRank Database

Gene regulatory network inference from CRISPR perturbations in primary CD4+ T cells elucidates the genomic basis of immune disease is a research paper published in bioRxiv (Cold Spring Harbor Laboratory) (2023). On theSindex it has a DataRank of 0.318. It has been cited 6 times, with 3 citing works in its 1-hop citation network.

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0.318DataRank · unranked

Scored on demand from live citation data

Open Access6 citations · 3 citing works in its network

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (2 grants)OA: greenTopics (22)IDs (PubMed)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 92%Citation Network 8%

Base Score Contribution

0.292

From this paper's citation signal

Citation Network Contribution

0.0260

From 2 citing papers with measurable signal

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Top 3 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 3 citers.

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medRxiv20242 citations103 referencesContributes 0.011
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20260 citations134 referencesContributes 0.000

Authors (7)

Maya M. Arce ORCID,Jacob W. Freimer ORCID,Mineto Ota ORCID,Alexander Marson ORCID,Alexis Battle ORCID

Live enrichment

PubMed:19162232

National Institutes of Health

Grant: 5R35GM139580-05

Modeling the dynamicimpact of rare and common genetic variation on gene expression anddisease

National Institutes of Health

Grant: 5R01HG008140-05

Integration of functional data and GWAS to elucidate genetic basis of diseases

greenLicense: cc-by-nd

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2023/09/17/2023.09.17.557749.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/2023.09.17.557749

repositoryhttps://pmc.ncbi.nlm.nih.gov/articles/PMC10516010/pdf/nihpp-2023.09.17.557749v2.pdf

https://doi.org/10.1101/2023.09.17.557749

https://doi.org/10.1016/j.xgen.2024.100671

Fields of Study

0301 basic medicine03 medical and health sciences

Keywords

CD4-Positive T-Lymphocytes570T cells610Bayes TheoremHistone-Lysine N-MethyltransferaseArticleimmunologynetwork inferenceImmune System DiseasesCRISPRGWASHumansGene Regulatory NetworksClustered Regularly Interspaced Short Palindromic RepeatsRNA-seqCRISPR-Cas Systemsinbornb errors of immunityGenome-Wide Association StudyTranscription Factors