Alexis Battle

Also affiliated with Discovery Institute, Johns Hopkins Medicine

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

18.9Author DataRank

Indexed papers

7in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The GTEx Consortium atlas of genetic regulatory effects across human tissues

Science(2020)10.1126/science.aaz1776

Top 2%

8.0DataRank

Top 2%5930 citations

Shankara Anand, Kristin G. Ardlie, Stacey Gabriel, Gad Getz, Aaron Graubert +95 more

Papers

Driven by 63 papers — median percentile 86. Top paper: “Cell type–specific genetic regulation of gene expression across human tissues”.

Cell type–specific genetic regulation of gene expression across human tissues

Science(2020)10.1126/science.aaz8528

N/A

10.3DataRank · unranked

596 citations

François Aguet, Meritxell Oliva, Manuel Muñoz-Aguirre, Silva Kasela, Valentin Wucher +77 more

The impact of sex on gene expression across human tissues

Science(2020)10.1126/science.aba3066

N/A

9.0DataRank · unranked

727 citations

Manuel Muñoz-Aguirre, Sarah Kim-Hellmuth, Valentin Wucher, Ariel DH Gewirtz, Daniel J. Cotter +72 more

Determinants of telomere length across human tissues

Science(2020)10.1126/science.aaz6876

N/A

8.6DataRank · unranked

501 citations

Farzana Jasmine, Lin Chen, Meytal Chernoff, Tong Lin, Dayana Delgado +90 more

The GTEx Consortium atlas of genetic regulatory effects across human tissues

Science(2020)10.1126/science.aaz1776

Top 2%

8.0DataRank

Top 2%5930 citations

Shankara Anand, Kristin G. Ardlie, Stacey Gabriel, Gad Getz, Aaron Graubert +95 more

A Quantitative Proteome Map of the Human Body

Cell(2020)10.1016/j.cell.2020.08.036

Top 4%

5.1DataRank

Top 4%487 citations

Meng Wang, Shin Lin, Ruiqi Jian, Xiao Li, Joanne Chan +95 more

De novo mutations across 1,465 diverse genomes reveal mutational insights and reductions in the Amish founder population

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1902766117

N/A

3.0DataRank · unranked

112 citations

Douglas P. Loesch, James A. Perry, Nancy L. Heard‐Costa, Daniel Taliun, Brian E. Cade +93 more

Genetic effects on gene expression across human tissues

UNC Libraries(2020)10.17615/p82n-gb73

Top 8%

2.6DataRank

Top 8%63 citations

Yuan He, Lin Chen, Emmanouil T. Dermitzakis, Philip A. Branton, Andrew B. Nobel +95 more

Genome-wide association and multi-omic analyses reveal ACTN2 as a gene linked to heart failure

Nature Communications(2020)10.1038/s41467-020-14843-7

N/A

2.3DataRank · unranked

86 citations

Emmanouil Tampakakis, Yanxiao Zhang, Wei Wang, Adam Auton, Michelle Agee +48 more

Sources of gene expression variation in a globally diverse human cohort

Nature(2024)10.1038/s41586-024-07708-2

Top 14%

1.5DataRank

Top 14%72 citations

Surya B. Chhetri, Michael G. Tassia, Arjun Biddanda, Stephanie M. Yan, Genevieve L. Wojcik +3 more

ACE inhibition and cardiometabolic risk factors, lung ACE2 and TMPRSS2 gene expression, and plasma ACE2 levels: a Mendelian randomization study

Royal Society Open Science(2020)10.1098/rsos.200958

N/A

1.2DataRank · unranked

19 citations

Marios Arvanitis, Paul Carter, Ana I. Hernández Cordero, Brian Jo, Ville Karhunen +28 more

A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex

Science(2024)10.1126/science.adh1938

Top 18%

1.2DataRank

Top 18%69 citations

Abby Spangler, Nicholas J. Eagles, Kelsey D. Montgomery, Sang Ho Kwon, Boyi Guo +90 more

OTTERS: a powerful TWAS framework leveraging summary-level reference data

Nature Communications(2023)10.1038/s41467-023-36862-w

N/A

1.1DataRank · unranked

56 citations

Geyu Zhou, Luca Pinello, Urmo Võsa, Lude Franke, Alexis Battle +81 more

In vivo CD8+ T cell CRISPR screening reveals control by Fli1 in infection and cancer

Cell(2021)10.1016/j.cell.2021.02.019

N/A

0.809DataRank · unranked

219 citations

Eri Arai, Omar Khan, Zhen Zhang, Shin Foong Ngiow, Yuan He +23 more

The functional impact of rare variation across the regulatory cascade

Cell Genomics(2023)10.1016/j.xgen.2023.100401

N/A

0.526DataRank · unranked

15 citations

Nicole M. Ferraro, Benjamin J. Strober, François Aguet, Silva Kasela, Marios Arvanitis +33 more

Integrated single cell and unsupervised spatial transcriptomic analysis defines molecular anatomy of the human dorsolateral prefrontal cortex

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.15.528722

N/A

0.520DataRank · unranked

31 citations

Abby Spangler, Nicholas J. Eagles, Kelsey D. Montgomery, Sang Ho Kwon, Boyi Guo +18 more

Sources of gene expression variation in a globally diverse human cohort

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.04.565639

Top 43%

0.434DataRank

Top 43%9 citations

Surya B. Chhetri, Michael G. Tassia, Arjun Biddanda, Alexis Battle, Rajiv C. McCoy +1 more

Integration of transcriptomics and long-read genomics prioritizes structural variants in rare disease

Genome Research(2025)10.1101/gr.279323.124

N/A

0.425DataRank · unranked

11 citations

Bohan Ni, Chloe Reuter, John E. Gorzynski, Sarah Fazal, Devon Bonner +13 more

Network reconstruction for trans acting genetic loci using multi-omics data and prior information

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.19.101592

N/A

0.408DataRank · unranked

6 citations

Ashis Saha, Mélanie Waldenberger, Sonja Kunze, Simone Wahl, Martina Müller‐Nurasyid +11 more

Validation of human telomere length multi-ancestry meta-analysis association signals identifies POP5 and KBTBD6 as human telomere length regulation genes

Nature Communications(2024)10.1038/s41467-024-48394-y

N/A

0.330DataRank · unranked

8 citations

Surya B. Chhetri, Carla J. Connelly, Margaret A. Taub, Matthew P. Conomos, Joshua S. Weinstock +95 more

Gene regulatory network inference from CRISPR perturbations in primary CD4+ T cells elucidates the genomic basis of immune disease

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.17.557749

N/A

0.318DataRank · unranked

6 citations

Maya M. Arce, Jacob W. Freimer, Mineto Ota, Alexander Marson, Alexis Battle +2 more

Genome-Wide Large-Scale Multi-Trait Analysis Characterizes Global Patterns of Pleiotropy and Unique Trait-Specific Variants

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.03.494686

N/A

0.208DataRank · unranked

3 citations

Surya B. Chhetri, Debashree Ray, Diptavo Dutta, Alexis Battle, Samsiddhi Bhattacharjee +2 more

Genetic determinants and genomic consequences of non-leukemogenic somatic point mutations

Nature Communications(2025)10.1038/s41467-025-64236-x

N/A

0.165DataRank · unranked

2 citations

Sharjeel A. Chaudhry, Μαρία Ιωάννου, Maria Viskadourou, Paula Reventún, Yasminka A. Jakubek +49 more

Validation of human telomere length trans-ancestry meta-analysis association signals identifies POP5 and KBTBD6 as novel human telomere length regulation genes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.12.548702

N/A

0.104DataRank · unranked

1 citations

Surya B. Chhetri, Carla J. Connelly, Margaret A. Taub, Matthew P. Conomos, Joshua S. Weinstock +93 more

Prioritization of causal genes from genome-wide association studies by Bayesian data integration across loci

PLoS Computational Biology(2025)10.1371/journal.pcbi.1012725

N/A

0.104DataRank · unranked

1 citations

Marios Arvanitis, ThuyVy Duong, Jennifer A. Brody, Alexis Battle, Nona Sotoodehnia +4 more

In vivo CRISPR screening identifies Fli1 as a transcriptional safeguard that restrains effector CD8 T cell differentiation during infection and cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.20.087379

N/A

0DataRank · unranked

3 citations

Eri Arai, Omar Khan, Zhen Zhang, Shin Foong Ngiow, Yuan He +20 more

OTTERS: A powerful TWAS framework leveraging summary-level reference data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.30.486451

N/A

0DataRank · unranked

3 citations

Geyu Zhou, Luca Pinello, Urmo Võsa, Lude Franke, Alexis Battle +7 more

Bayesian Multi-View Clustering given complex inter-view structure

F1000Research(2022)10.12688/f1000research.126215.1

N/A

0DataRank · unranked

0 citations

Alexis Battle, Benjamin D. Shapiro

Jasmine and Iris: population-scale structural variant comparison and analysis

Nature Methods(2023)10.1038/s41592-022-01753-3

N/A

0DataRank · unranked

167 citations

Gautam Prabhu, Rachel M. Sherman, Bohan Ni, Alexis Battle, Sergey Aganezov +2 more

Single-cell allele-specific expression analysis reveals dynamic and cell-type-specific regulatory effects

Nature Communications(2023)10.1038/s41467-023-42016-9

N/A

0DataRank · unranked

25 citations

Benjamin J. Strober, Joshua M Popp, Rebecca Keener, Hongkai Ji, Alexis Battle +1 more

Negative binomial count splitting for single-cell RNA sequencing data

arXiv (Cornell University)(2023)10.48550/arxiv.2307.12985

N/A

0DataRank · unranked

5 citations

Joshua M Popp, Lucy L. Gao, Alexis Battle, Daniela Witten, Anna Neufeld

Model-X knockoffs reveal data-dependent limits on regulatory network identification

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.23.541948

N/A

0DataRank · unranked

3 citations

Rebecca Keener, Patrick Cahan, Alexis Battle, Eric M. Kernfeld

sn-spMF: matrix factorization informs tissue-specific genetic regulation of gene expression

Genome biology(2020)10.1186/s13059-020-02129-6

N/A

0DataRank · unranked

33 citations

Surya B. Chhetri, Marios Arvanitis, Kaushik Srinivasan, François Aguet, Kristin G. Ardlie +6 more

Where Are the Disease-Associated eQTLs?

Trends in Genetics(2020)10.1016/j.tig.2020.08.009

N/A

0DataRank · unranked

342 citations

Alexis Battle, Yoav Gilad, Benjamin D. Umans

Artificial Intelligence and Technology Collaboratories: Innovating aging research and Alzheimer's care

Alzheimer s & Dementia(2024)10.1002/alz.13710

N/A

0DataRank · unranked

26 citations

Esther S. Oh, Rama Chellappa, Niteesh K. Choudhry, George Demiris, Deepak Ganesan +15 more

Genome-wide large-scale multi-trait analysis characterizes global patterns of pleiotropy and unique trait-specific variants

Nature Communications(2024)10.1038/s41467-024-51075-5

N/A

0DataRank · unranked

18 citations

Surya B. Chhetri, Debashree Ray, Diptavo Dutta, Alexis Battle, Samsiddhi Bhattacharjee +2 more

Transcriptome data are insufficient to control false discoveries in regulatory network inference

Cell Systems(2024)10.1016/j.cels.2024.07.006

N/A

0DataRank · unranked

18 citations

Rebecca Keener, Patrick Cahan, Alexis Battle, Eric M. Kernfeld

Enhancing Care for Older Adults and Dementia Patients With Large Language Models: Proceedings of the National Institute on Aging—Artificial Intelligence & Technology Collaboratory for Aging Research Symposium

The Journals of Gerontology Series A(2024)10.1093/gerona/glae176

N/A

0DataRank · unranked

15 citations

Alexis Battle, Jeremy Walston, Rama Chellappa, Peter Abadir

Cell type and dynamic state govern genetic regulation of gene expression in heterogeneous differentiating cultures

Cell Genomics(2024)10.1016/j.xgen.2024.100701

N/A

0DataRank · unranked

10 citations

Katherine Rhodes, Radhika Jangi, Mingyuan Li, Kenneth Barr, Karl Tayeb +3 more

Computational methods for allele-specific expression in single cells

Trends in Genetics(2024)10.1016/j.tig.2024.07.003

N/A

0DataRank · unranked

9 citations

Alexis Battle, Guanghao Qi

Artificial intelligence and technology collaboratories: Empowering innovation in AI + AgeTech

Journal of the American Geriatrics Society(2024)10.1111/jgs.18804

N/A

0DataRank · unranked

4 citations

Peter Abadir, Alexis Battle, Rama Chellappa, Niteesh K. Choudhry, George Demiris +5 more

Integration of transcriptomics and long-read genomics prioritizes structural variants in rare disease

medRxiv(2024)10.1101/2024.03.22.24304565

N/A

0DataRank · unranked

5 citations

Bohan Ni, Chloe Reuter, John E. Gorzynski, Sarah Fazal, Devon Bonner +13 more

Sparse matrix factorization robust to sample sharing across GWAS reveals interpretable genetic components

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.12.623313

N/A

0DataRank · unranked

1 citations

Joshua S. Weinstock, Rebecca Keener, Surya B. Chhetri, Marios Arvanitis, Alexis Battle +1 more

Aggregation of recount3 RNA-seq data improves inference of consensus and tissue-specific gene co-expression networks

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.20.576447

N/A

0DataRank · unranked

0 citations

Princy Parsana, Rebecca Keener, Kasper D. Hansen, Alexis Battle, Prashanthi Ravichandran

Bayesian Multi-View Clustering given complex inter-view structure

F1000Research(2024)10.12688/f1000research.126215.2

N/A

0DataRank · unranked

0 citations

Alexis Battle, Benjamin D. Shapiro

Genotype inference from aggregated chromatin accessibility data reveals genetic regulatory mechanisms

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.04.610850

Top 100%

0DataRank

Top 100%0 citations

Yuan He, Nae-Chyun Chen, Joseph K. Pickrell, Jeremiah H. Li, Max F. Dudek +6 more

Validation of human telomere length multi-ancestry meta-analysis association signals identifies POP5 and KBTBD6 as human telomere length regulation genes

UNC Libraries(2024)10.17615/vs68-ca81

N/A

0DataRank · unranked

0 citations

Ryan L. Minster, Fernando D. Martínez, Dawood Darbar, Juan M. Peralta, Barbara A. Konkle +93 more

Transcriptomic signatures of rare variant impacts across sex and the X chromosome

Human Genetics and Genomics Advances(2025)10.1016/j.xhgg.2025.100463

N/A

0DataRank · unranked

2 citations

Taibo Li, Nikolai G. Vetr, Nicole Ersaro, Alexis Battle, Stephen B. Montgomery +1 more

Transcriptome-wide association studies at cell state level using single-cell eQTL data

medRxiv(2025)10.1101/2025.03.17.25324128

N/A

0DataRank · unranked

1 citations

Eardi Lila, Zhicheng Ji, Ali Shojaie, Alexis Battle, Wei Sun +1 more

Disease-associated loci share properties with response eQTLs under common environmental exposures

Research Square(2025)10.21203/rs.3.rs-6561377/v1

N/A

0DataRank · unranked

1 citations

M Li, Olivia Allen, Jonathan E. Burnett, Josh Popp, Matthew Stephens +3 more

Functional impact of rare variants and sex across the X-chromosome and autosomes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.23.634570

N/A

0DataRank · unranked

0 citations

Taibo Li, Nikolai G. Vetr, Nicole M. Ferraro, Alexis Battle, Stephen B. Montgomery +1 more

Disease-associated loci share properties with response eQTLs under common environmental exposures

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.30.651602

N/A

0DataRank · unranked

0 citations

Mingyuan Li, Olivia Allen, Jonathan E. Burnett, Joshua M Popp, Matthew Stephens +3 more

Aggregation of recount3 RNA-seq data improves inference of consensus and tissue-specific gene coexpression networks

Genome Research(2025)10.1101/gr.280808.125

N/A

0DataRank · unranked

0 citations

Princy Parsana, Rebecca Keener, Kasper D. Hansen, Alexis Battle, Prashanthi Ravichandran

Coexpression network architecture reveals the brain-wide and multiregional basis of disease susceptibility

Nature Neuroscience(2021)10.1038/s41593-021-00887-5

N/A

0DataRank · unranked

92 citations

Gokul Ramaswami, William G. Pembroke, Sandrine Muller, Greta Pintacuda, Ashis Saha +5 more

Integrative multi-omic analysis identifies key transcription factors and target proteins in renal cell carcinoma and its subtypes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.23.690024

N/A

0DataRank · unranked

0 citations

Timothy Winter, Mitchell J. Machiela, Kevin R. Brown, Alexis Battle, Mark P. Purdue +3 more

DNA methylation signatures reveal that distinct combinations of transcription factors specify human immune cell epigenetic identity

Immunity(2021)10.1016/j.immuni.2021.10.001

N/A

0DataRank · unranked

66 citations

Senthilkumar Ramamoorthy, Benjamin D. Shapiro, Mary Kaileh, Dena Hernández, Dimitra Sarantopoulou +25 more

Redefining tissue specificity of genetic regulation of gene expression in the presence of allelic heterogeneity

medRxiv(2021)10.1101/2021.06.28.21259545

N/A

0DataRank · unranked

2 citations

Karl Tayeb, Benjamin J. Strober, Alexis Battle, Marios Arvanitis

Human embryoid bodies as a novel system for genomic studies of functionally diverse cell types

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.16.448714

N/A

0DataRank · unranked

1 citations

Kenneth Barr, Joshua M Popp, Benjamin J. Strober, Alexis Battle, Yoav Gilad +1 more

Aggregative trans-eQTL analysis detects trait-specific target gene sets in whole blood

Research Square(2021)10.21203/rs.3.rs-523532/v1

N/A

0DataRank · unranked

0 citations

Yuan He, Ashis Saha, Marios Arvanitis, Alexis Battle, Nilanjan Chatterjee +1 more

Random Forest Factorization Reveals Latent Structure in Single Cell RNA Sequencing Data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.13.460168

N/A

0DataRank · unranked

0 citations

Benjamin D. Shapiro, Michael C. Schatz, Alexis Battle, Boris Brenerman

Single-cell sequencing reveals lineage-specific dynamic genetic regulation of gene expression during human cardiomyocyte differentiation

PLoS Genetics(2022)10.1371/journal.pgen.1009666

N/A

0DataRank · unranked

91 citations

Joshua M Popp, Katherine Rhodes, Benjamin J. Strober, Kenneth Barr, Guanghao Qi +3 more

Redefining tissue specificity of genetic regulation of gene expression in the presence of allelic heterogeneity

The American Journal of Human Genetics(2022)10.1016/j.ajhg.2022.01.002

N/A

0DataRank · unranked

89 citations

Karl Tayeb, Benjamin J. Strober, Alexis Battle, Marios Arvanitis

Inference after latent variable estimation for single-cell RNA sequencing data

Biostatistics(2022)10.1093/biostatistics/kxac047

N/A

0DataRank · unranked

59 citations

Lucy L. Gao, Joshua M Popp, Alexis Battle, Daniela Witten, Anna Neufeld

Aggregative trans-eQTL analysis detects trait-specific target gene sets in whole blood

Nature Communications(2022)10.1038/s41467-022-31845-9

N/A

0DataRank · unranked

32 citations

Yuan He, Ashis Saha, Marios Arvanitis, Alexis Battle, Nilanjan Chatterjee +1 more

Alexis Battle

Indexed papers

Top data-sharing exemplar

Papers