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Pangenome graph layout by Path-Guided Stochastic Gradient Descent

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.22.558964Source: DataRank Database

Pangenome graph layout by Path-Guided Stochastic Gradient Descent is a research paper published in bioRxiv (Cold Spring Harbor Laboratory) (2023). On theSindex it has a DataRank of 0. It has been cited 5 times.

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0DataRank · unranked

Scored on demand from live citation data

Open Access5 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (5 grants)OA: greenTopics (25)IDs (PubMed, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (9)

Andrea Guarracino ORCID,Jan-Niklas Schmelzle ORCID,Jiajie Li ORCID,Zhiru Zhang ORCID,Jörg Hagmann ORCID

Live enrichment

PubMed:37790531 OpenAlex:https://openalex.org/W4386998825

National Institutes of Health

Grant: 1R01GM123489-01A1

A Unified High Performance Web Service for Systems Genetics and Precision Medicine

National Science Foundation

Grant: 2118709

Collaborative Research: PPoSS: LARGE: Panorama: Integrated Rack-Scale Acceleration for Computational Pangenomics

National Institutes of Health

Grant: 5U01DA047638-05

System genetics of menthol and nicotine addiction

NIGMS NIH HHS

Grant: R01 GM123489

NIDA NIH HHS

Grant: U01 DA047638

greenLicense: cc-by

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2023/10/17/2023.09.22.558964.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/2023.09.22.558964

repositoryhttps://doi.org/10.1101/2023.09.22.558964

repositoryhttps://pubmed.ncbi.nlm.nih.gov/37790531

Fields of Study

Genome Rearrangement AlgorithmsGenomics and Phylogenetic StudiesGenomics and Chromatin Dynamics0206 medical engineering02 engineering and technology

Keywords

GraphComputer scienceTheoretical computer scienceGraph LayoutVisualizationStochastic gradient descentGraph drawingArtificial intelligence570Original PaperGenome600GenomicsArticle004510Computer GraphicsHumansAlgorithmsSoftware

Sustainable Development Goals

SDG 0: Partnerships for the goals