Andrea Guarracino

Translational Genomics Research Institute

Also affiliated with University of Tennessee Health Science Center, TransGenada (United States)

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

19.2Author DataRank

Indexed papers

18in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 18 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x

Top 4%

5.1DataRank

Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Papers

Driven by 42 papers — median percentile 64. Top paper: “A draft human pangenome reference”.

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x

Top 4%

5.1DataRank

Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Pangenome graph construction from genome alignments with Minigraph-Cactus

Nature Biotechnology(2023)10.1038/s41587-023-01793-w

N/A

5.0DataRank · unranked

318 citations

Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao +94 more

The complete sequence of a human Y chromosome

Nature(2023)10.1038/s41586-023-06457-y

Top 5%

4.1DataRank

Top 5%464 citations

Sergey Nurk, Mark J. P. Chaisson, Savannah J. Hoyt, Dylan J. Taylor, Nicolas Altemose +82 more

ODGI: understanding pangenome graphs

Bioinformatics(2022)10.1093/bioinformatics/btac308

N/A

3.8DataRank · unranked

211 citations

Simon Heumos, Sven Nahnsen, Pjotr Prins, Erik Garrison, Andrea Guarracino

A Draft Human Pangenome Reference

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.09.499321

Top 8%

2.9DataRank

Top 8%74 citations

Mobin Asri, Daniel Doerr, Eoghan Harrington, Hickey, Glenn, Julian K. Lucas +47 more

Increased mutation and gene conversion within human segmental duplications

Nature(2023)10.1038/s41586-023-05895-y

N/A

2.1DataRank · unranked

114 citations

Philip C. Dishuck, William T. Harvey, William S. DeWitt, Xavi Guitart, Michael E. Goldberg +108 more

High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation

Genome Research(2024)10.1101/gr.279273.124

Top 13%

1.7DataRank

Top 13%78 citations

Sophia B Gibson, Nikhita Damaraju, Miranda Pg Zalusky, Kendra Hoekzema, David Twesigomwe +42 more

Inhibition of HECT E3 ligases as potential therapy for COVID-19

Cell Death and Disease(2021)10.1038/s41419-021-03513-1

N/A

1.5DataRank · unranked

57 citations

Jing Liu, Michela Biancolella, Tonino Alonzi, Antonio Novelli, J. J. Patten +38 more

Complete sequencing of ape genomes

Nature(2025)10.1038/s41586-025-08816-3

Top 16%

1.3DataRank

Top 16%128 citations

Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar +123 more

Gapless assembly of complete human and plant chromosomes using only nanopore sequencing

Genome Research(2024)10.1101/gr.279334.124

N/A

0.966DataRank · unranked

34 citations

Zhigui Bao, Andrea Guarracino, Shujun Ou, Sara Goodwin, Katharine M. Jenike +22 more

The complete sequence of a human Y chromosome

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.01.518724

Top 22%

0.934DataRank

Top 22%42 citations

Sergey Nurk, Savannah J. Hoyt, Dylan J. Taylor, Nicolas Altemose, Paul W. Hook +79 more

Automated assembly of high-quality diploid human reference genomes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.06.483034

Top 28%

0.719DataRank

Top 28%22 citations

Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Jonathan M. D. Wood +77 more

Recombination between heterologous human acrocentric chromosomes

Nature(2023)10.1038/s41586-023-05976-y

N/A

0.710DataRank · unranked

113 citations

Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren +106 more

A complete diploid human genome benchmark for personalized genomics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.21.677443

Top 32%

0.611DataRank

Top 32%23 citations

Nathan Dwarshuis, Hyun Joo Ji, Arang Rhie, Hailey Loucks, Glennis A. Logsdon +60 more

Complete sequencing of ape genomes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.31.605654

Top 34%

0.582DataRank

Top 34%26 citations

Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar +123 more

Recombination between heterologous human acrocentric chromosomes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.15.504037

N/A

0.517DataRank · unranked

9 citations

Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren +7 more

The reference genome of the human diploid cell line RPE-1

Nature Communications(2025)10.1038/s41467-025-62428-z

Top 38%

0.500DataRank

Top 38%27 citations

Alessio Colantoni, Luca Corda, Elena Di Tommaso, Franca Pelliccia, Riccardo Ottalevi +8 more

The complete diploid reference genome of RPE-1 identifies human phased epigenetic landscapes

10.1101/2023.11.01.565049

Top 43%

0.434DataRank

Top 43%17 citations

Luca Corda, Elena Di Tommaso, Franca Pelliccia, Riccardo Ottalevi, Danilo Licastro +6 more

Impact of radiation therapy dose, fractionation, and immunotherapeutic partner in a mouse model of hormone receptor–positive mammary carcinogenesis

JNCI Journal of the National Cancer Institute(2024)10.1093/jnci/djae329

N/A

0.371DataRank · unranked

9 citations

Norma Bloy, Giulia Petroni, Carlos Jiménez‐Cortegana, Ai Sato, Kristina Iribarren +16 more

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100543

Top 50%

0.352DataRank

Top 50%6 citations

Stephanie Greer, Dmitri S. Pavlichin, Bo Zhou, Alexander E. Urban, Tsachy Weissman +94 more

Comparative population pangenomes reveal unexpected complexity and fitness effects of structural variants

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.11.637762

N/A

0.345DataRank · unranked

9 citations

Bohao Fang, George E. Kolyfetis, Rebecca G. Cheek, Nancy Chen, John W. Fitzpatrick +10 more

The Platinum Pedigree: A long-read benchmark for genetic variants

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.02.616333

Top 53%

0.321DataRank

Top 53%6 citations

C. Nolan, Tom Mokveld, William J. Rowell, S. Y. Lee, Egor Dolzhenko +26 more

Multispecies pangenomes reveal a pervasive influence of population size on structural variation

Science(2025)10.1126/science.adw1931

N/A

0.312DataRank · unranked

7 citations

Bohao Fang, Danielle E. Khost, George E. Kolyfetis, Rebecca G. Cheek, Devon A. DeRaad +10 more

Creating a biomedical knowledge base by addressing GPT inaccurate responses and benchmarking context

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.16.618663

Top 57%

0.279DataRank

Top 57%5 citations

Rupert W. Overall, Andrea Guarracino, Vincenza Colonna, Flavia Villani, Erik Garrison +20 more

Using the linear references from the pangenome to discover missing autism variants

Nature Communications(2026)10.1038/s41467-026-68378-4

Top 65%

0.208DataRank

Top 65%3 citations

Jiadong Lin, Michelle D. Noyes, Young-Jun Kwon, Isaac Wong, Nidhi Koundinya +252 more

Pangenome reconstruction in rats enhances genotype-phenotype mapping and novel variant discovery

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.10.575041

Top 70%

0.165DataRank

Top 70%2 citations

Andrea Guarracino, Rachel R. Ward, Tomomi Green, Madeleine Emms, Michal Pravenec +6 more

Genetic modulation of protein expression in rat brain

iScience(2025)10.1016/j.isci.2025.112079

N/A

0.104DataRank · unranked

1 citations

Zhiping Wu, Andrea Guarracino, Flavia Villani, Dehui Kong, Ariana Mancieri +18 more

Genetic Modulation of Protein Expression in Rat Brain

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.17.580840

N/A

0DataRank · unranked

0 citations

Zhiping Wu, Andrea Guarracino, Flavia Villani, Deihui Kong, Ariana Mancieri +14 more

Chromosome-specific epigenetic control and transmission of ribosomal DNA arrays in Hominidae genomes

Cell Genomics(2025)10.1016/j.xgen.2025.101031

N/A

0DataRank · unranked

8 citations

Paxton Kostos, Sean McKinney, Matthew Borchers, Jeff Haug, Andrea Guarracino +17 more

Optimal gap-affine alignment in O ( s ) space

Bioinformatics(2023)10.1093/bioinformatics/btad074

N/A

0DataRank · unranked

63 citations

Jordan M. Eizenga, Andrea Guarracino, Benedict Paten, Erik Garrison, Miquel Moretó +1 more

Pangenome reconstruction in rats enhances genotype-phenotype mapping and variant discovery

iScience(2025)10.1016/j.isci.2025.111835

N/A

0DataRank · unranked

0 citations

Andrea Guarracino, Rachel R. Ward, Tomomi Green, Madeleine Emms, Michal Pravenec +7 more

Creating a biomedical knowledge base by addressing GPT inaccurate responses and benchmarking context

Open Research Africa(2025)10.12688/openresafrica.15854.1

Top 100%

0DataRank

Top 100%0 citations

Rupert W. Overall, Andrea Guarracino, Vicenza Colonna, Flavia Villani, Erik Garrison +21 more

Origin and evolution of acrocentric chromosomes in human and great apes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.22.696095

N/A

0DataRank · unranked

0 citations

Prajna Hebbar, Leonardo Gomes de Lima, Alexander Patrick Sweeten, Arang Rhie, Tamara Potapova +13 more

High-quality mouse reference genomes reveal the structural complexity of the murine protein-coding landscape

Cell Genomics(2025)10.1016/j.xgen.2025.101074

Top 100%

0DataRank

Top 100%0 citations

Jin Li, Xinyu F. Yan, Rachel K. Meade, Elizabeth Anderson, Patrick B. Chen +28 more

Unbiased pangenome graphs

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.14.480413

N/A

0DataRank · unranked

21 citations

Andrea Guarracino, Erik Garrison

Pangenome graph layout by Path-Guided Stochastic Gradient Descent

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.22.558964

N/A

0DataRank · unranked

5 citations

Andrea Guarracino, Jan-Niklas Schmelzle, Jiajie Li, Zhiru Zhang, Jörg Hagmann +4 more

Unbiased pangenome graphs

Bioinformatics(2022)10.1093/bioinformatics/btac743

N/A

0DataRank · unranked

87 citations

Andrea Guarracino, Erik Garrison

Building pangenome graphs

Nature Methods(2024)10.1038/s41592-024-02430-3

N/A

0DataRank · unranked

162 citations

Andrea Guarracino, Simon Heumos, Flavia Villani, Zhigui Bao, Lorenzo Tattini +25 more

Considerations in the search for epistasis

Genome biology(2024)10.1186/s13059-024-03427-z

N/A

0DataRank · unranked

16 citations

Johnathan Cooper‐Knock, Julian Stamp, Ross P. Byrne, Soufiane Mourragui, Juami H. M. van Gils +36 more

Building pangenome graphs

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.05.535718

N/A

0DataRank · unranked

118 citations

Andrea Guarracino, Simon Heumos, Flavia Villani, Zhigui Bao, Lorenzo Tattini +25 more

Pangenome graph layout by Path-Guided Stochastic Gradient Descent

Bioinformatics(2024)10.1093/bioinformatics/btae363

N/A

0DataRank · unranked

9 citations

Andrea Guarracino, Jan-Niklas Schmelzle, Jiajie Li, Zhiru Zhang, Jörg Hagmann +4 more

Gapless assembly of complete human and plant chromosomes using only nanopore sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.15.585294

N/A

0DataRank · unranked

20 citations

Zhigui Bao, Andrea Guarracino, Shujun Ou, Sara Goodwin, Katharine M. Jenike +18 more

Andrea Guarracino

Indexed papers

Top data-sharing exemplar

Papers