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Sequence similarity estimation by random subsequence sketching

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.05.636706Source: DataRank Database

Sequence similarity estimation by random subsequence sketching is a research paper published in bioRxiv (Cold Spring Harbor Laboratory) (2025). On theSindex it has a DataRank of 0. It has been cited 1 time.

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Enrichment:Funding (4 grants)OA: greenTopics (25)IDs (PubMed, OpenAlex)

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Authors (3)

Vinamratha Pattar,Mingfu Shao ORCID,Ke Chen ORCID

Live enrichment

PubMed:39975056 OpenAlex:https://openalex.org/W4407273362

Grant: 2145171

NHGRI NIH HHS

Grant: R01HG011065

National Science Foundation

Grant: 2019797

BBSRC-NSF/BIO: IIBR Informatics: Collaborative Research: Inference of isoform-level regulatory infrastructures with studies in steroid-producing cells

National Institutes of Health

Grant: 1R01HG011065-01A1

Computational Methods for Assembling Multiple RNA-seq Samples

greenLicense: cc-by

repositoryhttps://doi.org/10.1101/2025.02.05.636706

publisherhttps://syndication.highwire.org/content/doi/10.1101/2025.02.05.636706

repositoryhttps://pubmed.ncbi.nlm.nih.gov/39975056

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/11839126

Fields of Study

Genomics and Phylogenetic StudiesFractal and DNA sequence analysisTime Series Analysis and Forecasting0206 medical engineering02 engineering and technology

Keywords

SubsequenceLongest common subsequence problemSimilarity (geometry)Sequence (biology)Longest increasing subsequenceEstimationComputer scienceRandom sequenceMathematicsAlgorithmTheoretical computer scienceArtificial intelligenceEngineeringGeneticsBiologyNearest neighbor searchPhylogenetic clusteringAlignment-free sequence comparisonEdit distance embeddingArticle