Mingfu Shao

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 28 papers. Top paper: “Context-aware seeds for read mapping”.

Context-aware seeds for read mapping

Algorithms for Molecular Biology(2020)10.1186/s13015-020-00172-3

N/A

0DataRank · unranked

5 citations

Mingfu Shao, Carl Kingsford, Hongyi Xin

Scallop2 enables accurate assembly of multiple-end RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.03.458862

N/A

0DataRank · unranked

5 citations

Qian Shi, Mingfu Shao, Qimin Zhang

On bridging paired-end RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.26.433113

N/A

0DataRank · unranked

2 citations

Qian Shi, Mingfu Shao, Xiang Li

Accurate assembly of multi-end RNA-seq data with Scallop2

Nature Computational Science(2022)10.1038/s43588-022-00216-1

N/A

0DataRank · unranked

32 citations

Qian Shi, Mingfu Shao, Qimin Zhang

Locality-Sensitive Bucketing Functions for the Edit Distance

arXiv (Cornell University)(2022)10.4230/lipics.wabi.2022.22

N/A

0DataRank · unranked

0 citations

Mingfu Shao, Chen, Ke

Seeding with minimized subsequence

Bioinformatics(2023)10.1093/bioinformatics/btad218

N/A

0DataRank · unranked

10 citations

Qian Shi, Ke Chen, Mingfu Shao, Xiang Li

Transcript assembly and annotations: Bias and adjustment

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011734

N/A

0DataRank · unranked

6 citations

Mingfu Shao, Qimin Zhang

Locality-sensitive bucketing functions for the edit distance

Algorithms for Molecular Biology(2023)10.1186/s13015-023-00234-2

N/A

0DataRank · unranked

7 citations

Mingfu Shao, Ke Chen

On de novo Bridging Paired-end RNA-seq Data

PubMed(2023)10.1145/3584371.3612987

N/A

0DataRank · unranked

4 citations

Mingfu Shao, Xiang Li

On the Maximal Independent Sets of k -mers with the Edit Distance

PubMed(2023)10.1145/3584371.3612982

N/A

0DataRank · unranked

2 citations

Ke Chen, Mingfu Shao, Leran Ma

Transcript Assembly and Annotations: Bias and Adjustment

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.20.537700

N/A

0DataRank · unranked

0 citations

Mingfu Shao, Qimin Zhang

Accurate assembly of multiple RNA-seq samples with Aletsch

Bioinformatics(2024)10.1093/bioinformatics/btae215

N/A

0DataRank · unranked

5 citations

Qimin Zhang, Mingfu Shao, Qian Shi

Learning locality-sensitive bucketing functions

Bioinformatics(2024)10.1093/bioinformatics/btae228

N/A

0DataRank · unranked

2 citations

Ke Chen, Xiang Li, Qian Shi, Mingfu Shao, Xin Yuan

Accurate assembly of circular RNAs with TERRACE

Genome Research(2024)10.1101/gr.279106.124

N/A

0DataRank · unranked

3 citations

Qian Shi, Xiaofei Carl Zang, Mingfu Shao, Tasfia Zahin

Efficient Seeding for Error-Prone Sequences with SubseqHash2

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.30.596711

N/A

0DataRank · unranked

2 citations

Ke Chen, Mingfu Shao, Xiang Li

Transcriptome Assembly at Single-Cell Resolution with Beaver

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.04.621958

N/A

0DataRank · unranked

1 citations

Qimin Zhang, Mingfu Shao, Qian Shi

Accurate Assembly of Circular RNAs with TERRACE

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.09.579380

N/A

0DataRank · unranked

0 citations

Qian Shi, Xiaofei Carl Zang, Mingfu Shao, Tasfia Zahin

Accurate Detection of Tandem Repeats from Error-Prone Sequences with EquiRep

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.05.621953

N/A

0DataRank · unranked

0 citations

Tasfia Zahin, Xiang Li, Mingfu Shao, Zhezheng Song

An Exact and Fast SAT Formulation for the DCJ Distance

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.05.622153

N/A

0DataRank · unranked

0 citations

Ke Chen, A. Casanova Díaz, Mingfu Shao, Aaryan M. Sarnaik

Anchorage Accurately Assembles Anchor-Flanked Synthetic Long Reads

PubMed(2024)10.4230/lipics.wabi.2024.22

N/A

0DataRank · unranked

0 citations

Xiang Li, Kyle Metcalfe, Tuval Ben-Yehezkel, Ryan Kelley, Mingfu Shao +1 more

Efficient seeding for error-prone sequences with SubseqHash2

Bioinformatics(2025)10.1093/bioinformatics/btaf418

N/A

0DataRank · unranked

3 citations

Ke Chen, Mingfu Shao, Xiang Li

Transcriptome assembly at single-cell resolution with Beaver

Bioinformatics(2025)10.1093/bioinformatics/btaf236

N/A

0DataRank · unranked

2 citations

Qimin Zhang, Mingfu Shao, Qian Shi

Accurate detection of tandem repeats from error-prone sequences with EquiRep

Genome Research(2025)10.1101/gr.280750.125

N/A

0DataRank · unranked

2 citations

Tasfia Zahin, Xiang Li, Mingfu Shao, Zhezheng Song

Sequence similarity estimation by random subsequence sketching

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.05.636706

N/A

0DataRank · unranked

1 citations

Vinamratha Pattar, Mingfu Shao, Ke Chen

Boosting Transcript Assembly via Delineating Transcript Start and End Sites

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.13.682211

N/A

0DataRank · unranked

1 citations

Xiaofei Carl Zang, Andy Teng, Tasfia Zahin, Mingfu Shao, Irtesam Mahmud Khan

Anchorage accurately assembles anchor-flanked synthetic long reads

Algorithms for Molecular Biology(2025)10.1186/s13015-025-00288-4

N/A

0DataRank · unranked

0 citations

Xiang Li, Kyle Metcalfe, Tuval Ben-Yehezkel, Ryan Kelley, Mingfu Shao +1 more

Edit Distance Embedding with Genomic Large Language Model

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.25.678635

N/A

0DataRank · unranked

0 citations

Ke Chen, Yi-jia Zhang, Mingfu Shao, Xiang Li

Minimum flow decomposition guided by saturating subflows

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.11.693570

N/A

0DataRank · unranked

0 citations

Abhishek Talesra, Sanchal Thakkar, Mingfu Shao, Ke Chen