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CONREAL: Conserved Regulatory Elements Anchored Alignment Algorithm for Identification of Transcription Factor Binding Sites by Phylogenetic Footprinting

Genome Research(2004)10.1101/gr.1642804Source: DataRank Database

CONREAL: Conserved Regulatory Elements Anchored Alignment Algorithm for Identification of Transcription Factor Binding Sites by Phylogenetic Footprinting is a research paper published in Genome Research (2004). On theSindex it has a DataRank of 4.7. It has been cited 97 times, with 94 citing works in its 1-hop citation network.

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4.7DataRank · unranked

Scored on demand from live citation data

97 citations · 94 citing works in its network

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:OA: bronzeTopics (41)IDs (PubMed, PMC, OpenAlex)Annotations (1)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (0/2)

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 15%Citation Network 85%

Base Score Contribution

0.688

From this paper's citation signal

Citation Network Contribution

4.0

From 76 citing papers with measurable signal

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Authors (4)

Victor Guryev ORCID,Ronald H.A. Plasterk,Edwin Cuppen ORCID,Eugene Berezikov

Live enrichment

PubMed:14672977 PMC:PMC314294 OpenAlex:https://openalex.org/W2103465619

bronze

journalhttp://genome.cshlp.org/content/14/1/170.full.pdf

publisherhttp://genome.cshlp.org/content/14/1/170.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/gr.1642804

journalhttps://doi.org/10.1101/gr.1642804

repositoryhttps://pubmed.ncbi.nlm.nih.gov/14672977

Fields of Study

Genomics and Phylogenetic StudiesGenomics and Chromatin DynamicsChromosomal and Genetic Variations

MeSH Terms

AlgorithmsAnimalsBinding SitesDNA-Binding ProteinsHumansNuclear ProteinsPhylogenyPromoter Regions, GeneticRegulatory Sequences, Nucleic AcidSequence Homology, Nucleic AcidTranscription FactorsZebrafishSequence AlignmentConserved SequenceDNA FootprintingInternetTakifuguMiceRatsHepatocyte Nuclear Factor 3-beta

Keywords

BiologyFootprintingTranscription factorDNA binding sitePromoterConserved sequenceComputational biologyPhylogenetic treeGeneticsDNA footprintingBinding siteCis-regulatory moduleDegeneracy (biology)GeneDNA-binding proteinPeptide sequenceGene expressionEnhancer

Sustainable Development Goals

SDG 0: Life in Land