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HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads

Genome Research(2020)10.1101/gr.263566.120Source: DataRank Database

HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads is a research paper published in Genome Research (2020). On theSindex it has a DataRank of 0. It has been cited 842 times.

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Enrichment:Funding (21 grants)OA: bronzeTopics (53)IDs (PubMed, PMC, OpenAlex)Annotations (3)SDGs (1)

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Authors (10)

Brian P. Walenz ORCID,Arang Rhie ORCID,Mitchell R. Vollger ORCID,Glennis A. Logsdon ORCID,Robert Grothe

Live enrichment

PubMed:32801147 PMC:PMC7545148 OpenAlex:https://openalex.org/W3049406222

NIH

Grant: HG010169

NIH

Grant: HG002385

NHGRI

Grant: R21 1R21HG010548-01

NHGRI

Grant: U01 1U01HG010971

NIGMS

Grant: 1F32GM134558

NHGRI NIH HHS

Grant: R21 HG010548

NHGRI NIH HHS

Grant: R01 HG002385

NHGRI NIH HHS

Grant: R01 HG010169

NIGMS NIH HHS

Grant: F32 GM134558

NHGRI NIH HHS

Grant: U01 HG010971

National Institutes of Health

Grant: 5U01HG010971-05

Center for Human Reference Genome Diversity

National Institutes of Health

Grant: 5R01HG002385-15

Sequence and Assembly of Segmental Duplications

National Institutes of Health

Grant: 5R01HG010169-03

Sequence-resolved structural variation of human genomes

National Institutes of Health

Grant: 5F32GM134558-02

Centromere Sequence, Variation, and Function

National Institutes of Health

Grant: 5R01HG010169-07

Sequence resolution of complex human genome structural variation

National Institutes of Health

Grant: 1R21HG010548-01

IMPROVING THROUGHPUT OF LONG READS WITH HIGH CONSENSUS BASE ACCURACY TO RESOLVE REPETITIVE DNAS

National Institute of General Medical Sciences

U.S. National Institutes of Health

Intramural Research Program

National Human Genome Research Institute

National Institutes of Health

bronzeLicense: CC BY

journalhttps://genome.cshlp.org/content/30/9/1291.full.pdf

publisherhttps://genome.cshlp.org/content/30/9/1291.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/gr.263566.120

journalhttps://doi.org/10.1101/gr.263566.120

repositoryhttps://pubmed.ncbi.nlm.nih.gov/32801147

Fields of Study

Genomics and Phylogenetic StudiesChromosomal and Genetic VariationsGenomic variations and chromosomal abnormalities0301 basic medicine0206 medical engineering02 engineering and technology03 medical and health sciences

MeSH Terms

AllelesAnimalsCell LineDNA, NeoplasmDNA, SatelliteDrosophilaHaplotypesHumansSoftwareGenetic VariationReproducibility of ResultsGenome, HumanSequence Analysis, DNAChromosome DuplicationHigh-Throughput Nucleotide Sequencing

Keywords

BiologyContigSegmental duplicationSequence assemblyGenomeNanopore sequencingHuman genomeComputational biologyHaplotypeHybrid genome assemblyReference genomeLocus (genetics)GeneticsAlleleGeneGenome, HumanMethodGenetic VariationHigh-Throughput Nucleotide SequencingReproducibility of ResultsDNA, NeoplasmSequence Analysis, DNADNA, SatelliteCell LineHaplotypesChromosome DuplicationAnimalsHumansDrosophilaAllelesSoftware

Sustainable Development Goals

SDG 0: Life below water