The structure, function and evolution of a complete human chromosome 8 is a dataset published in Nature (2021). On theSindex it has a DataRank of 5.6, placing it in the top 3.6% of the data-sharing corpus. It has been cited 388 times, with 100 citing works in its 1-hop citation network. Its calibrated FAIR score is 67/100.
Ranks in the top 4% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“complete CHM13 chromosome 8 sequence (PRJNA686384)”
The paper provides a BioProject accession (PRJNA686384) which is a persistent identifier scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“listed in Supplementary Table 9 with their BioProject, accession numbers and/or URL”
The paper names BioProject (a repository) as the holder of the data.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“complete CHM13 chromosome 8 sequence (PRJNA686384)”
The dataset identifiers appear only in the body text (data availability statement), not in the reference list.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The complete CHM13 chromosome 8 sequence and all data generated and/or used in this study are publicly available and listed in Supplementary Table 9 with their BioProject, accession numbers and/or URL. For convenience, we also list their BioProjects and/or URLs here: complete CHM13 chromosome 8 sequence (PRJNA686384); CHM13 ONT, Iso-Seq, and CENP-A ChIP-seq data (PRJNA559484); CHM13 Strand-Seq alignments (https://zenodo.org/record/3998125); HG00733 ONT data (PRJNA686388); HG00733 PacBio HiFi data (PRJEB36100); testis and fetal brain Iso-Seq data (PRJNA659539); and NHPs (chimpanzee (Clint; S006007), orangutan (Susie; PR01109), and macaque (AG07107)) ONT and PacBio HiFi data (PRJNA659034). All CHM13 BACs used in this study are listed in Supplementary Table 10 with their accession numbers.”
The data availability statement points to repository records with accessions and a persistent link.
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The complete telomere-to-telomere sequence of human chromosome 8 is 146,259,671 bases long and includes 3,334,256 bases that are missing from the current reference genome (GRCh38).”
The dataset's content is described in running prose, not in an itemised inventory. [majority verdict 'partial' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The complete CHM13 chromosome 8 sequence and all data generated and/or used in this study are publicly available”
The data are stated to be publicly available with no precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The complete CHM13 chromosome 8 sequence and all data generated and/or used in this study are publicly available”
The paper explicitly labels the data as 'publicly available', which is an access-level label.
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not sensitive and no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not state how long the data will persist or when they become available (beyond 'publicly available'). [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No community data or metadata standard is named for the data.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“CHM13 Illumina data (SRR1997411, SRR3189741, SRR3189742 and SRR3189743)”
The paper gives an identifier (SRR3189741) for Illumina data used in the study.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No license is stated for the data; the CC-BY license applies to the article only.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given to identify a specific snapshot of the data.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Custom code for the SUNK-based assembly method is available at https://github.com/glogsdon1/sunk-based_assembly”
The paper gives a GitHub URL for the custom code, which is a machine-resolvable locator.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“HG002385 and HG010169 (E.E.E.)”
The paper provides specific grant numbers from the NIH. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Libraries were sequenced on the Sequel II platform (Instrument Control SW v7.1 or v8.0) with three to seven SMRT Cells 8M”
The paper names the specific sequencing platform (Sequel II) used to produce the data. [majority verdict 'yes' (3/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, codebook) is named as accompanying the data.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.895
From this paper's citation signal
Citation Network Contribution
4.7
From 100 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 100 citers.
NIGMS NIH HHS
Grant: F32 GM134558
NHGRI NIH HHS
Grant: K99 HG011041
NHGRI NIH HHS
Grant: R01 HG002385
NHGRI NIH HHS
Grant: U01 HG010971
NIAMS NIH HHS
Grant: P30 AR074990
NHGRI NIH HHS
Grant: R01 HG010169
NHGRI NIH HHS
Grant: T32 HG000035
NHGRI NIH HHS
Grant: R01 HG011274
NHGRI NIH HHS
Grant: R21 HG010548
NLM NIH HHS
Grant: T32 LM012419
National Institutes of Health
Grant: 5T32LM012419-04
University of Washington PhD Training in Big Data for Genomics and Neuroscience
National Institutes of Health
Grant: 1R21HG010548-01
IMPROVING THROUGHPUT OF LONG READS WITH HIGH CONSENSUS BASE ACCURACY TO RESOLVE REPETITIVE DNAS
National Institutes of Health
Grant: 5R01HG002385-15
Sequence and Assembly of Segmental Duplications
National Institutes of Health
Grant: 5K99HG011041-02
The fitness effects of de novo structural variants
National Institutes of Health
Grant: 5F32GM134558-02
Centromere Sequence, Variation, and Function
National Institutes of Health
Grant: 5U01HG010971-05
Center for Human Reference Genome Diversity
National Institutes of Health
Grant: 5R01HG010169-07
Sequence resolution of complex human genome structural variation
Howard Hughes Medical Institute
Fields of Study
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