Complete Genome Sequence of the Uropathogenic Methicillin-Resistant Staphylococcus aureus Strain MRSA-1369 is a dataset published in Microbiology Resource Announcements (2022). On theSindex it has a DataRank of 0.232, placing it in the top 61.7% of the data-sharing corpus. It has been cited 3 times, with 2 citing works in its 1-hop citation network. Its calibrated FAIR score is 58/100.
Ranks in the top 62% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The complete genome sequence of the MRSA-1369 strain has been deposited in GenBank under the accession numbers CP099576 to CP099578 . The raw sequence reads have been deposited in the SRA under the accession numbers SRR19786624 (ONT) and SRR19786625 (Illumina). The associated BioProject and BioSample accession numbers are PRJNA851804 and SAMN29251701 , respectively.”
The paper provides multiple persistent identifiers (GenBank/SRA accessions, BioProject) for the study's own data.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The complete genome sequence of the MRSA-1369 strain has been deposited in GenBank under the accession numbers CP099576 to CP099578 . The raw sequence reads have been deposited in the SRA under the accession numbers SRR19786624 (ONT) and SRR19786625 (Illumina).”
The paper names GenBank (a repository) and the SRA (a repository) as the holders of the data.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Data availability. The complete genome sequence of the MRSA-1369 strain has been deposited in GenBank under the accession numbers CP099576 to CP099578 . The raw sequence reads have been deposited in the SRA under the accession numbers SRR19786624 (ONT) and SRR19786625 (Illumina). The associated BioProject and BioSample accession numbers are PRJNA851804 and SAMN29251701 , respectively.”
The dataset identifiers appear only in the body text (Data Availability section), not as a reference-list entry. [majority verdict 'partial' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Data availability. The complete genome sequence of the MRSA-1369 strain has been deposited in GenBank under the accession numbers CP099576 to CP099578 . The raw sequence reads have been deposited in the SRA under the accession numbers SRR19786624 (ONT) and SRR19786625 (Illumina). The associated BioProject and BioSample accession numbers are PRJNA851804 and SAMN29251701 , respectively.”
The statement points at repository records with accession numbers, which is Colavizza category 3. [majority verdict 'yes' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The complete MRSA-1369 genome sequence consists of one large circular chromosome of 2,878,496 bp (GC content, 33%), rotated to start at dnaA , and two plasmids of 16,683 bp (GC content, 29%) and 3,125 bp (GC content, 29%).”
The description of the dataset (genome size, plasmids, etc.) is given in running prose, not as an itemised inventory (section, table, or list).
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The complete genome sequence of the MRSA-1369 strain has been deposited in GenBank under the accession numbers CP099576 to CP099578 . The raw sequence reads have been deposited in the SRA under the accession numbers SRR19786624 (ONT) and SRR19786625 (Illumina).”
The data are deposited in public repositories with no stated precondition (e.g., embargo, registration, application). [majority verdict 'yes' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The complete genome sequence of the MRSA-1369 strain has been deposited in GenBank under the accession numbers CP099576 to CP099578 .”
The paper describes the deposit in GenBank and SRA, which implies public availability, but does not explicitly label the access level as 'open access' or 'publicly available'. [majority verdict 'partial' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are bacterial genome sequences from a clinical isolate, not sensitive human-subject data; no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not state the timing of availability or a retention period for the data. [majority verdict 'no' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name any file format for the released data (e.g., FASTQ, GenBank flat file).
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard (e.g., MIAME, MINSEQE, ISA-Tab) is named for the data.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
No identifier for an external resource (e.g., source dataset, reference genome, database version) is provided; only third-party tools are mentioned without identifiers.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper only states the article's Creative Commons Attribution 4.0 license, not a license for the data itself.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given to identify a specific snapshot of the data; only accession numbers are provided.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
The availability of code written for this study is not addressed; only third-party tools are mentioned.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“National Institutes of Health grants R01AI134847-01A1 (F.A.), RO1DK51406 (S.J.H. and M.G.C.), and 1U19AI157797-01 (S.J.H., F.A., and M.G.C.)”
The paper lists specific grant numbers for the funding that supported the work.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Illumina NovaSeq 6000 platform”
The paper names specific instruments, kits, and software versions used to produce the data (e.g., Illumina NovaSeq 6000, Trimmomatic v0.30, Unicycler v0.4.0).
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (e.g., README, data dictionary, codebook) is mentioned as accompanying the deposited data. [majority verdict 'no' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.208
From this paper's citation signal
Citation Network Contribution
0.0239
From 1 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 2 citers.
VINNOVA
Grant: 2019-05491
Vetenskapsrådet
Grant: 2018-04589
Vetenskapsrådet
Grant: 2021-05040J
Vetenskapsrådet
Grant: 2020-02005_3
HHS | National Institutes of Health
Grant: R01AI134847-01A1
HHS | NIH | National Institute of Allergy and Infectious Diseases
Grant: T32AI007172
HHS | National Institutes of Health
Grant: RO1DK51406
HHS | National Institutes of Health
Grant: 1U19AI157797-01
Joint Programming Initiative on Antimicrobial Resistance
Grant: 2018-00969
Kempestiftelserna
Grant: SMK-1755
NIAID NIH HHS
Grant: U19 AI157797
NIDDK NIH HHS
Grant: R01 DK051406
Familjen Erling-Perssons Stiftelse
Stiftelsen Olle Engkvist Byggmästare
Familjen Erling-Perssons Stiftelse (Erling-Persson Family Foundation)