Complete Genome Sequence of an Escherichia coli Strain Isolated from Laboratory Mouse Stool for Use as a Chassis for Transgene Delivery to the Murine Microbiome is a dataset published in Microbiology Resource Announcements (2023). On theSindex it has a DataRank of 0.269, placing it in the top 58.4% of the data-sharing corpus. It has been cited 5 times. Its calibrated FAIR score is 63/100.
Ranks in the top 58% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The complete, annotated genome sequence of EcAZ-1 has been deposited at the European Bioinformatics Institute under the accession numbers OX341604.1 (chromosome), OX341605.1 (plasmid 1), and OX341606.1 (plasmid 2). The SRA accession numbers are ERR10187966 (Illumina sequencing) and ERR10187964 (PacBio sequencing).”
The paper provides ENA/INSDC accession numbers (OX341604.1, etc.), which are persistent identifiers in a recognised scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The complete, annotated genome sequence of EcAZ-1 has been deposited at the European Bioinformatics Institute”
The European Bioinformatics Institute (EBI) is a named data repository listed in re3data/FAIRsharing. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Data availability. The complete, annotated genome sequence of EcAZ-1 has been deposited at the European Bioinformatics Institute under the accession numbers OX341604.1 (chromosome), OX341605.1 (plasmid 1), and OX341606.1 (plasmid 2). The SRA accession numbers are ERR10187966 (Illumina sequencing) and ERR10187964 (PacBio sequencing).”
The dataset identifiers appear only in the body text (data availability section), not in the reference list.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Data availability. The complete, annotated genome sequence of EcAZ-1 has been deposited at the European Bioinformatics Institute under the accession numbers OX341604.1 (chromosome), OX341605.1 (plasmid 1), and OX341606.1 (plasmid 2). The SRA accession numbers are ERR10187966 (Illumina sequencing) and ERR10187964 (PacBio sequencing).”
The statement points to a repository record (European Bioinformatics Institute) with accession numbers, fulfilling Colavizza category 3.
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“This process resulted in three closed molecules, namely, a primary chromosome of 5,011,906 bases (G 1C content of 51%), one plasmid of 42,565 bases (G 1C content of 41%), and another plasmid of 8,571 bases (G 1C content of 47%).”
The dataset's content (size, number of molecules) is described in running prose, not in an itemised section or table. [majority verdict 'partial' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Data availability. The complete, annotated genome sequence of EcAZ-1 has been deposited at the European Bioinformatics Institute under the accession numbers OX341604.1 (chromosome), OX341605.1 (plasmid 1), and OX341606.1 (plasmid 2). The SRA accession numbers are ERR10187966 (Illumina sequencing) and ERR10187964 (PacBio sequencing).”
The data are deposited in a public repository with accessions, and no precondition is stated; they are openly available.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Data availability. The complete, annotated genome sequence of EcAZ-1 has been deposited at the European Bioinformatics Institute under the accession numbers OX341604.1 (chromosome), OX341605.1 (plasmid 1), and OX341606.1 (plasmid 2). The SRA accession numbers are ERR10187966 (Illumina sequencing) and ERR10187964 (PacBio sequencing).”
The paper describes the action of depositing the data at a repository, but no explicit access-level label (e.g., 'open access') is applied to the data.
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are bacterial genome sequences, not human-derived or sensitive; no gatekeeper is mentioned.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No sentence states when the data become available or how long they persist. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name any file format for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No community data or metadata standard (e.g., MIAME, MINSEQE, BIDS) is named for the data.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
The paper mentions software and databases (e.g., Pfam-A v34, UniProt/Swiss-Prot) without identifiers, and no external resource identifier (e.g., for a source dataset) is given.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No reuse license is stated for the data; the copyright statement applies to the paper, not the dataset.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“OX341604.1 (chromosome), OX341605.1 (plasmid 1), and OX341606.1 (plasmid 2)”
The accession numbers include version suffixes (e.g., .1), which pin the snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
The paper does not provide any code location or repository; only third-party software is named.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“A.Z. is supported by a VA Merit BLR&D Award (grant I01 BX005707) and NIH grants K08 DK102902, R03 DK114536, R01 HL148801, R01 EB030134, and U01 CA265719.”
The paper lists specific grant numbers (e.g., I01 BX005707) alongside funder names.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“The DNA was sequenced on a PacBio GS2 system and base called using basecaller v1 (PacBio)”
The paper names specific instruments (PacBio GS2, Illumina MiSeq) and software versions (fastp v0.23.2, Unicycler v0.5.0, etc.) used to produce the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“This process resulted in three closed molecules, namely, a primary chromosome of 5,011,906 bases (G+C content of 51%), one plasmid of 42,565 bases (G+C content of 41%), and another plasmid of 8,571 bases (G+C content of 47%).”— not found in the paper; verdict downgraded
Variable-level definitions are provided inside the article as prose, not as a separate documentation object shipped with the data. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.269
From this paper's citation signal
Citation Network Contribution
0
Citation network not refreshed for this result
This paper's DataRank is currently driven only by its base citation score. Citation network data was not refreshed for this result.
Learn more about DataRank methodology →National Science Foundation
Grant: 1000340660
U.S. Department of Veterans Affairs
Grant: BX005707
HHS | National Institutes of Health
Grant: DK102902
HHS | National Institutes of Health
Grant: DK114536
HHS | National Institutes of Health
Grant: HL148801
HHS | National Institutes of Health
Grant: EB030134
HHS | National Institutes of Health
Grant: CA265719
HHS | National Institutes of Health
Grant: DK120515
HHS | National Institutes of Health
Grant: DK063491
HHS | National Institutes of Health
Grant: CA014195
HHS | National Institutes of Health
Grant: AA011999
HHS | National Institutes of Health
Grant: TR001442
NCATS NIH HHS
Grant: UL1 TR001442
NCI NIH HHS
Grant: P30 CA014195
NIDDK NIH HHS
Grant: R03 DK114536
NIDDK NIH HHS
Grant: K08 DK102902
NCATS NIH HHS
Grant: TL1 TR001443
NIAAA NIH HHS
Grant: P50 AA011999
NHLBI NIH HHS
Grant: R01 HL148801
BLRD VA
Grant: I01 BX005707
NIDDK NIH HHS
Grant: P30 DK120515
NCI NIH HHS
Grant: U01 CA265719
NIDDK NIH HHS
Grant: P30 DK063491
NIBIB NIH HHS
Grant: R01 EB030134
FWCI
0.96
Citation Percentile
0.7%
Citation Trend
Fields of Study
Keywords