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LongTR: genome-wide profiling of genetic variation at tandem repeats from long reads

Genome biology(2024)10.1186/s13059-024-03319-2Source: DataRank Database

LongTR: genome-wide profiling of genetic variation at tandem repeats from long reads is a research paper published in Genome biology (2024). On theSindex it has a DataRank of 0. It has been cited 28 times.

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Scored on demand from live citation data

Open Access28 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (6 grants)Impact (FWCI 4.64)OA: goldTopics (53)IDs (PubMed, PMC, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (6)

Justin M. Zook ORCID,Sara Javadzadeh ORCID,Jonghun Park ORCID,Aarushi Sehgal,Melissa Gymrek ORCID

Live enrichment

PubMed:38965568 PMC:PMC11229021 OpenAlex:https://openalex.org/W4400320513

National Human Genome Research Institute

Grant: 1R01HG010149

Intramural Research Program, National Institute on Drug Abuse

Grant: U01DA051234

NIGMS NIH HHS

Grant: R01 GM114362

NHGRI NIH HHS

Grant: R01 HG010149

National Institutes of Health

Grant: 2R01HG010149-05

Refining Mendelian disease analysis via detection of clinically relevant repeat variants

National Institutes of Health

Grant: 5U01DA051234-02

Characterization of Tandem Repeat and Structural Variants Contributing to Addictive Behaviors in Mice and Rats

FWCI

4.64

Citation Percentile

1.0%

Citation Trend

2024

2025

2026

goldLicense: cc-by

journalhttps://genomebiology.biomedcentral.com/counter/pdf/10.1186/s13059-024-03319-2

publisherhttps://genomebiology.biomedcentral.com/counter/pdf/10.1186/s13059-024-03319-2

publisherhttps://link.springer.com/content/pdf/10.1186/s13059-024-03319-2.pdf

publisherhttps://link.springer.com/article/10.1186/s13059-024-03319-2/fulltext.html

journalhttps://doi.org/10.1186/s13059-024-03319-2

Fields of Study

Genomics and Phylogenetic StudiesGenetic Neurodegenerative DiseasesMitochondrial Function and Pathology0206 medical engineering02 engineering and technologyHumansTandem Repeat SequencesGenome, HumanGenetic VariationSoftwareSequence Analysis, DNAHigh-Throughput Nucleotide SequencingNanopore Sequencing

MeSH Terms

Nanopore SequencingHumansSoftwareGenetic VariationGenome, HumanSequence Analysis, DNATandem Repeat SequencesHigh-Throughput Nucleotide Sequencing

Keywords

Tandem repeatNanopore sequencingBiologyGenomeMicrosatelliteComputational biologyGeneticsVariable number tandem repeatHuman genomeSTR analysisHuman geneticsGenotypeGeneAlleleMicrosatellitesTandem RepeatsLong Reads570QH301-705.5Genome, HumanShort ReportGenetic VariationHigh-Throughput Nucleotide SequencingDNASequence Analysis, DNAQH426-470Tandem Repeat SequencesHumansBiology (General)Sequence AnalysisSoftwareHuman

Sustainable Development Goals

SDG 3: 3. Good health