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GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009444Source: DataRank Database

GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs is a research paper published in PLoS Computational Biology (2021). On theSindex it has a DataRank of 0. It has been cited 13 times.

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Scored on demand from live citation data

Open Access13 citations

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datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (4 grants)Impact (FWCI 0.89)OA: goldTopics (30)IDs (PubMed, PMC, OpenAlex)Annotations (2)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (5)

Vincenzo Bonnici ORCID,Erik Garrison ORCID,Rosalba Giugno ORCID,Luca Pinello ORCID,Manuel Tognon ORCID

Live enrichment

PubMed:34570769 PMC:PMC8519448 OpenAlex:https://openalex.org/W3200848929

NHGRI NIH HHS

Grant: R00 HG008399

NHGRI NIH HHS

Grant: R35 HG010717

jpcofund2 personalised medicine for neurodegenerative diseases project

Grant: JPND2019-466-037

European Research Council

Grant: 814978

FWCI

0.89

Citation Percentile

0.7%

Citation Trend

2022

2023

2024

2025

goldLicense: cc-by

journalhttps://doi.org/10.1371/journal.pcbi.1009444

publisherhttps://doi.org/10.1371/journal.pcbi.1009444

repositoryhttps://pubmed.ncbi.nlm.nih.gov/34570769

repositoryhttps://doaj.org/article/a139b8b3383047a48810a794b90b50ba

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/8519448

Fields of Study

Genomics and Chromatin DynamicsGenomics and Phylogenetic StudiesGenetic Mapping and Diversity in Plants and Animals

MeSH Terms

Base SequenceBinding SitesComputer GraphicsHaplotypesHumansProtein BindingSoftwareTranscription FactorsGenetic VariationGenome, HumanComputational BiologyGenomicsNucleotide Motifs

Keywords

GenomeENCODEBiologyHaplotypeComputational biologyGeneDNA binding siteGeneticsDNA sequencingGenomicsPopulationHuman genomePromoterGene expression

GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs

FAIR Checklist

Authors (5)

Funding (4 grants)

Impact

Open Access

Topics

Annotations (Europe PMC)