Pilot corpus: NIH-funded biomedical datasets. Any DOI can be scored on demand — network effects sharpen as coverage grows.

Pairtools: From sequencing data to chromosome contacts

PLoS Computational Biology(2024)10.1371/journal.pcbi.1012164Source: DataRank Database

Pairtools: From sequencing data to chromosome contacts is a research paper published in PLoS Computational Biology (2024). On theSindex it has a DataRank of 0.815. It has been cited 228 times.

N/A

0.815DataRank · unranked

Scored on demand from live citation data

Open Access228 citations

Download PDF

Cite:

Linked data & code

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (11 grants)Impact (FWCI 35.49)OA: goldTopics (42)Linked Datasets (14)DataCite Reuse (14)IDs (PubMed, PMC, OpenAlex)SDGs (2)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

FAIR checklist signals are shown for context only and do not affect DataRank scoring.

Run a calibrated FAIR evaluation for this paper →

We only score data papers we can read in full — never from an abstract alone.

DataRank Breakdown

Base Score 100%Citation Network 0%

Base Score Contribution

0.815

From this paper's citation signal

Citation Network Contribution

Citation network not refreshed for this result

This paper's DataRank is currently driven only by its base citation score. Citation network data was not refreshed for this result.

Learn more about DataRank methodology →

Authors (8)

Nezar Abdennur ORCID,Geoffrey Fudenberg ORCID,Ilya M. Flyamer ORCID,Aleksandra A. Galitsyna ORCID,Anton Goloborodko ORCID

Live enrichment

PubMed:38809952 PMC:PMC11164360 OpenAlex:https://openalex.org/W4399118709

National Institutes of Health

Grant: UM1-HG011536

National Institutes of Health

Grant: R01 HG003143

National Institutes of Health

Grant: 17-00-00180

National Institutes of Health

Grant: R35 GM143116-01

Österreichische Wissenschaftsfonds FWF

Grant: SFB F 8804-B “Meiosis”.

NHGRI NIH HHS

Grant: UM1 HG011536

NIGMS NIH HHS

Grant: R35 GM143116

Austrian Science Fund FWF

Grant: F 8804

National Institutes of Health

Grant: 5R35GM143116-03

Genomes in 3D: from maps to mechanisms

National Institutes of Health

Grant: 5UM1HG011536-03

Center for 3D Structure and Physics of the Genome

Österreichischen Akademie der Wissenschaften

FWCI

35.49

Citation Percentile

1.0%

Citation Trend

2023

2024

2025

2026

goldLicense: cc-by

journalhttps://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012164&type=printable

publisherhttps://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012164&type=printable

publisherhttps://dx.plos.org/10.1371/journal.pcbi.1012164

journalhttps://doi.org/10.1371/journal.pcbi.1012164

repositoryhttps://pubmed.ncbi.nlm.nih.gov/38809952

Fields of Study

Single-cell and spatial transcriptomicsCancer Genomics and DiagnosticsGenomics and Phylogenetic Studies0301 basic medicine0206 medical engineering02 engineering and technology03 medical and health sciences

MeSH Terms

Chromosome MappingChromosomesHumansSoftwareSequence Analysis, DNAComputational BiologyHigh-Throughput Nucleotide Sequencing

Keywords

Computer sciencePython (programming language)SuiteModular designBenchmarkingMetagenomicsPipeline transportProtocol (science)Data miningOperating systemEngineeringBiologyChromosome pairsDNA fragment ligationQuality controlComputational BiologyHigh-Throughput Nucleotide SequencingChromosome MappingGenomicsSequence Analysis, DNAArticleChromosomesData processingSequence alignmentHumansDNA librariesComputer softwareSoftware

Sustainable Development Goals

SDG 3: 3. Good healthSDG 0: Industry, innovation and infrastructure

Additional file 1 of Improved simultaneous mapping of epigenetic features and 3D chromatin structure via ViCAR

10.6084/m9.figshare.26945553.v1figshare

Additional file 1 of Improved simultaneous mapping of epigenetic features and 3D chromatin structure via ViCAR

10.6084/m9.figshare.26945553figshare

Additional file 2 of Improved simultaneous mapping of epigenetic features and 3D chromatin structure via ViCAR

10.6084/m9.figshare.26945556.v1figshare

Additional file 2 of Improved simultaneous mapping of epigenetic features and 3D chromatin structure via ViCAR

10.6084/m9.figshare.26945556figshare

Additional file 4 of Improved simultaneous mapping of epigenetic features and 3D chromatin structure via ViCAR

10.6084/m9.figshare.26945562.v1figshare

Additional file 4 of Improved simultaneous mapping of epigenetic features and 3D chromatin structure via ViCAR

10.6084/m9.figshare.26945562figshare

Additional file 5 of Improved simultaneous mapping of epigenetic features and 3D chromatin structure via ViCAR

10.6084/m9.figshare.26945565.v1figshare

Additional file 5 of Improved simultaneous mapping of epigenetic features and 3D chromatin structure via ViCAR

10.6084/m9.figshare.26945565figshare

Additional file 6 of Improved simultaneous mapping of epigenetic features and 3D chromatin structure via ViCAR

10.6084/m9.figshare.26945568.v1figshare

Additional file 6 of Improved simultaneous mapping of epigenetic features and 3D chromatin structure via ViCAR

10.6084/m9.figshare.26945568figshare

Additional file 7 of Improved simultaneous mapping of epigenetic features and 3D chromatin structure via ViCAR

10.6084/m9.figshare.26945571.v1figshare

Additional file 7 of Improved simultaneous mapping of epigenetic features and 3D chromatin structure via ViCAR

10.6084/m9.figshare.26945571figshare

Additional file 3 of Improved simultaneous mapping of epigenetic features and 3D chromatin structure via ViCAR

10.6084/m9.figshare.26945559figshare

Additional file 3 of Improved simultaneous mapping of epigenetic features and 3D chromatin structure via ViCAR

10.6084/m9.figshare.26945559.v1figshare