Integration of a multi-omics stem cell differentiation dataset using a dynamical model is a dataset published in PLoS Genetics (2023). On theSindex it has a DataRank of 0.600, placing it in the top 32.9% of the data-sharing corpus. It has been cited 15 times, with 10 citing works in its 1-hop citation network. Its calibrated FAIR score is 58/100.
Ranks in the top 33% for downstream scientific impact
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The RNA-seq data has been deposited in GEO (ID: GSE93301).”
GEO accession GSE93301 is a persistent identifier in an accepted scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The RNA-seq data has been deposited in GEO (ID: GSE93301).”
GEO and MassIVE are named as data repositories; both are listed in re3data/FAIRsharing.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The RNA-seq data has been deposited in GEO (ID: GSE93301).”
The dataset identifier appears only in the body text (Data Availability section), not in the reference list.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The RNA-seq data has been deposited in GEO (ID: GSE93301). A list of the RNA-seq samples can be found in S3 Table . The raw MS data has been deposited in MassIVE (ID: MSV000080461). The processed data can also be mined and accessed through a web application at www.semraulab.com/multi-omics .”
The statement points to repository records with accession numbers, matching Colavizza category 3.
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“A list of the RNA-seq samples can be found in S3 Table .”
The paper explicitly names a table (S3 Table) that lists samples, constituting an itemised inventory. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The RNA-seq data has been deposited in GEO (ID: GSE93301).”
The data are deposited in public repositories (GEO, MassIVE) with no stated precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The RNA-seq data has been deposited in GEO (ID: GSE93301). A list of the RNA-seq samples can be found in S3 Table . The raw MS data has been deposited in MassIVE (ID: MSV000080461). The processed data can also be mined and accessed through a web application at www.semraulab.com/multi-omics .”
The paper does not use an explicit access-level label but describes the deposit action. [majority verdict 'partial' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are from mouse embryonic stem cells, not human subjects, and no gatekeeper of any kind is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No sentence states how long the data will remain available or when they become obtainable. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name any file format (e.g., FASTQ, CSV) for the deposited data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard (e.g., MIAME, ontology) is named; only manuscript reporting guidelines like CONSORT are not mentioned.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“The miReporter backbone (AddGene, Plasmid #82478) was transformed into DH5a competent cells.”— not found in the paper; verdict downgraded
An identifier (AddGene plasmid #82478) is given for a resource used in the study (the plasmid). [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No licence is named for the data; the CC BY licence applies only to the article.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given for the data snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No locator for the study's own code is provided; the only mention is 'custom R scripts' without a repository or DOI.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“N.S. was supported by a New Innovator Award from the NIGMS of the NIH under Award number DP2GM123497.”
An award number (DP2GM123497) is given for the funding.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Illumina NovaSeq 600”
Named instruments and software (e.g., Illumina NovaSeq 600, STAR v2.6.1a) are used to produce the data.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“A list of the RNA-seq samples can be found in S3 Table .”
Variable-level definitions (sample list) are given inside the article (S3 Table), not as a separate documentation object shipped with the data. [majority verdict 'partial' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.416
From this paper's citation signal
Citation Network Contribution
0.184
From 9 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 10 citers.
Nederlandse Organisatie voor Wetenschappelijk Onderzoek
Grant: Nanofront
National Institute of General Medical Sciences
Grant: DP2GM123497
National Institutes of Health
Grant: 1DP2GM123497-01
Ribosome-mediated translational regulation during stem cell differentiation
FWCI
1.38
Citation Percentile
0.8%
Citation Trend
Fields of Study
MeSH Terms
Keywords