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Combining signal and sequence to detect RNA polymerase initiation in ATAC-seq data

PLoS ONE(2020)10.1371/journal.pone.0232332Source: DataRank Database

Combining signal and sequence to detect RNA polymerase initiation in ATAC-seq data is a research paper published in PLoS ONE (2020). On theSindex it has a DataRank of 0. It has been cited 3 times.

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0DataRank · unranked

Scored on demand from live citation data

Open Access3 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (6 grants)OA: goldTopics (20)IDs (PubMed)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (4)

Murad Chowdhury ORCID,Margaret Gruca ORCID,Robin D. Dowell ORCID,Ignacio J. Tripodi ORCID

Live enrichment

PubMed:26207759

National Science Foundation

Grant: DBI-1759949

National Institutes of Health

Grant: R01GM125871

National Institutes of Health

Grant: 1S10OD012300

National Institutes of Health

Grant: 1S10OD012300-01

A High-memory Supercomputer for Proteomics, Text Mining and Microbiome Research

National Science Foundation

Grant: 1759949

ABI Innovation: Data Driven Model of Polymerase Activity

National Institutes of Health

Grant: 1R01GM125871-01A1

A Technique for Measuring Transcription Factor Activity

goldLicense: cc-by

publisherhttps://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0232332&type=printable

publisherhttps://dx.plos.org/10.1371/journal.pone.0232332

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/7192442

repositoryhttps://scholar.colorado.edu/concern/articles/5h73px48j

repositoryhttps://doaj.org/article/74f8f0245b2c4e72b2fddddd7d7ca664

Fields of Study

0301 basic medicine0206 medical engineering02 engineering and technology03 medical and health sciences

Keywords

ScienceQRDNA-Directed RNA PolymerasesSequence Analysis, DNAHCT116 CellsA549 CellsMCF-7 CellsMedicineHumansNeural Networks, ComputerNucleotide MotifsTranscription Initiation SiteResearch ArticleProtein BindingTranscription Factors