Pilot corpus: NIH-funded biomedical datasets. Any DOI can be scored on demand — network effects sharpen as coverage grows.

Identification and characterization of diverse OTU deubiquitinases in bacteria

The EMBO Journal(2020)10.15252/embj.2020105127Source: DataRank Database

Identification and characterization of diverse OTU deubiquitinases in bacteria is a research paper published in The EMBO Journal (2020). On theSindex it has a DataRank of 1.6. It has been cited 70 times, with 44 citing works in its 1-hop citation network.

N/A

1.6DataRank · unranked

Scored on demand from live citation data

Deposits data Open Access70 citations · 44 citing works in its network

Download PDF

Cite:

Linked data & code

gen pfam pdb

Data availability

Repositories this paper deposited data in (declared in PubMed).

PDB6W9O 6W9R 6W9S

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (13 grants)OA: hybridTopics (20)IDs (PubMed, PMC)Annotations (3)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

FAIR checklist signals are shown for context only and do not affect DataRank scoring.

Run a calibrated FAIR evaluation for this paper →

We only score data papers we can read in full — never from an abstract alone.

DataRank Breakdown

Base Score 41%Citation Network 59%

Base Score Contribution

0.639

From this paper's citation signal

Citation Network Contribution

0.925

From 36 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 44 citers.

Theoretical modeling and design of some pyrazolopyrimidine derivatives as Wolbachia inhibitors, targeting lymphatic filariasis and onchocerciasis
In Silico Pharmacology202218 citations30 referencesContributes 0.098
Exosomal lncRNA Mir100hg from lung cancer stem cells activates H3K14 lactylation to enhance metastatic activity in non-stem lung cancer cells
Journal of Nanobiotechnology202527 citations47 referencesContributes 0.071
Structural Basis of Ubiquitin Recognition by a Bacterial Ovarian Tumor Deubiquitinase LotA
Journal of Bacteriology202117 citations45 referencesContributes 0.064
Structural basis for the dual catalytic activity of the Legionella pneumophila ovarian tumor (OTU) domain deubiquitinase LotA
Journal of Biological Chemistry202211 citations44 referencesContributes 0.056
OTU7B Modulates the Mosquito Immune Response to Beauveria bassiana Infection via Deubiquitination of the Toll Adaptor TRAF4
Microbiology Spectrum202217 citations53 referencesContributes 0.055

Authors (11)

Justine Nguyen ORCID,Tyler G. Franklin ORCID,Paul P. Geurink ORCID,Cameron G. Roberts ORCID,Daniel J. Sanderson ORCID

Live enrichment

PubMed:32567101 PMC:PMC7396840

H2020 European Research Council

Grant: 309756 and 724804

Medical Research Council

Grant: U105192732

Nederlandse Organisatie voor Wetenschappelijk Onderzoek

Grant: 724.013.002

Covalent Enzyme Capture

National Institutes of Health

Grant: 5T32GM071338-14

Program in Molecular and Cellular Biosciences

European Research Council

Grant: 309756

Specificity in the ubiquitin system

European Research Council

Grant: 724804

Understanding the complexity and architecture in protein ubiquitination

NIGMS NIH HHS

Grant: T32 GM071338

Medical Research Council

Grant: MC_U105192732

European Commission

Grant: 283570

Transnational access and enhancement of integrated Biological Structure determination at synchrotron X-ray radiation facilities

Lister Institute of Preventive Medicine

Collins Medical Trust

European Molecular Biology Organization

Oregon Health and Science University

hybridLicense: cc-by

publisherhttps://onlinelibrary.wiley.com/doi/pdfdirect/10.15252/embj.2020105127

publisherhttps://link.springer.com/content/pdf/10.15252/embj.2020105127.pdf

publisherhttps://onlinelibrary.wiley.com/doi/full-xml/10.15252/embj.2020105127

publisherhttps://link.springer.com/article/10.15252/embj.2020105127/fulltext.html

publisherhttps://www.embopress.org/doi/pdf/10.15252/embj.2020105127

Fields of Study

0301 basic medicine03 medical and health sciences

MeSH Terms

LegionellaBacterial ProteinsPolyubiquitinProtein FoldingSubstrate SpecificityDeubiquitinating Enzymes

Keywords

PathogenUbiquitinprotein structureDeubiquitinaseBacterial EffectorProtein FoldingDeubiquitinating EnzymesLegionellaArticlesSubstrate SpecificityBacterial ProteinsPolyubiquitin