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Structural basis of TRAPPIII‐mediated Rab1 activation

The EMBO Journal(2021)10.15252/embj.2020107607Source: DataRank Database

Structural basis of TRAPPIII‐mediated Rab1 activation is a research paper published in The EMBO Journal (2021). On theSindex it has a DataRank of 1.4. It has been cited 44 times, with 36 citing works in its 1-hop citation network.

N/A

1.4DataRank · unranked

Scored on demand from live citation data

Deposits data Open Access44 citations · 36 citing works in its network

Cite:

Linked data & code

pdb doi

Data availability

Repositories this paper deposited data in (declared in PubMed).

PDB7KMT

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (23 grants)Impact (FWCI 2.78)OA: hybridTopics (34)IDs (PubMed, PMC, OpenAlex)Annotations (2)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 41%Citation Network 59%

Base Score Contribution

0.571

From this paper's citation signal

Citation Network Contribution

0.829

From 29 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 36 citers.

TRAPP structures reveal the big picture
The EMBO Journal20213 citations13 referencesContributes 0.107
Structure of the Mon1-Ccz1 complex reveals molecular basis of membrane binding for Rab7 activation
Proceedings of the National Academy of Sciences202228 citations43 referencesContributes 0.078
Targeting of the Mon1-Ccz1 Rab guanine nucleotide exchange factor to distinct organelles by a synergistic protein and lipid code
Journal of Biological Chemistry202325 citations42 referencesContributes 0.078
Structure of the metazoan Rab7 GEF complex Mon1–Ccz1–Bulli
Proceedings of the National Academy of Sciences202320 citations46 referencesContributes 0.066
SP-141 targets Trs85 to inhibit rice blast fungus infection and functions as a potential broad-spectrum antifungal agent
Plant Communications202315 citations45 referencesContributes 0.062

Authors (8)

Ben P. Phillips ORCID,Kumar Yugandhar ORCID,Ethan J. Sanford ORCID,Marcus B. Smolka ORCID,Haiyuan Yu ORCID

Live enrichment

PubMed:34018207 PMC:PMC8204860 OpenAlex:https://openalex.org/W3160486644

HHS|NIH|National Institute of General Medical Sciences

Grant: R01GM116942

HHS|NIH|National Institute of General Medical Sciences

Grant: R01GM124559

HHS|NIH|National Institute of General Medical Sciences

Grant: R01GM097272

HHS|NIH|National Institute of General Medical Sciences

Grant: R35GM136258

HHS|NIH|National Institute of General Medical Sciences

Grant: R01GM125639

HHS|NIH|Eunice Kennedy Shriver National Institute of Child Health and Human Development

Grant: R01HD095296

NSF|BIO|Division of Biological Infrastructure

Grant: DBI‐1661380

UKRI|Medical Research Council

Grant: MRC_UP_1201/10

NSF|EHR|Division of Graduate Education

Grant: DGE‐1650441

Medical Research Council

Grant: MC_UP_1201/10

NIGMS NIH HHS

Grant: R35 GM141159

National Institutes of Health

Grant: 3R01GM116942-03S1

Regulation of Rab activation at the Golgi complex

Wellcome Trust

Grant: unidentified

unidentified

National Science Foundation

Grant: 1719875

Cornell Center for Materials Research - MRSEC

National Institutes of Health

Grant: 5R01GM097272-05

Cellular Responses to DNA Replication Stress

National Institutes of Health

Grant: 5R01GM125639-02

Quantifying molecular consequences of human missense variants with large-scale interactome perturbation studies

National Institutes of Health

Grant: 5R01HD095296-07

Coordination of Atr Signaling for Genetic Quality Control, Silencing, and DNA Repair during Meiosis

National Institutes of Health

Grant: 5R35GM136258-05

GTPase Regulation of the Golgi Complex

National Institutes of Health

Grant: 5R01GM124559-03

Towards a comprehensive multiscale 3D human interactome network

Fundação para a Ciência e a Tecnologia, I.P.

Grant: PTDC/CCI-INF/6762/2020

MS3: New foundations for micro-services and serverless systems

Wellcome Trust

Biotechnology and Biological Sciences Research Council

Alfred P. Sloan Foundation

FWCI

2.78

Citation Percentile

0.9%

Citation Trend

2020

2021

2022

2023

2024

2025

2026

hybridLicense: cc-by

journalhttps://link.springer.com/content/pdf/10.15252/embj.2020107607.pdf

publisherhttps://link.springer.com/content/pdf/10.15252/embj.2020107607.pdf

publisherhttps://onlinelibrary.wiley.com/doi/full-xml/10.15252/embj.2020107607

publisherhttps://link.springer.com/article/10.15252/embj.2020107607/fulltext.html

publisherhttps://www.embopress.org/doi/pdf/10.15252/embj.2020107607

Fields of Study

Cellular transport and secretionAutophagy in Disease and TherapyLysosomal Storage Disorders Research0301 basic medicine03 medical and health sciences

MeSH Terms

Guanosine DiphosphateGuanosine TriphosphateProtein ConformationCryoelectron MicroscopyGuanine Nucleotide Exchange Factorsrab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsVesicular Transport Proteins

Keywords

RabGuanine nucleotide exchange factorBiologyGTPaseCell biologyProtein subunitBiophysicsBiochemistrymembrane traffickingAutophagyRab1570Saccharomyces cerevisiae ProteinsProtein ConformationCryoelectron MicroscopyVesicular Transport ProteinsArticlesGuanosine Diphosphaterab GTP-Binding ProteinsGuanine Nucleotide Exchange FactorsGuanosine Triphosphate

Related Papers (1)

Whole-Exome Sequencing and hiPSC Cardiomyocyte Models Identify MYRIP, TRAPPC11, and SLC27A6 of Potential Importance to Left Ventricular Hypertrophy in an African Ancestry Population

N/A

0.484DataRank · unranked

Frontiers in Genetics(2021)

co-cited

10.3389/fgene.2021.588452