Haiyuan Yu

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile

0.257Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Comprehensive evaluation of diverse massively parallel reporter assays to functionally characterize human enhancers genome-wide

Genome biology(2025)10.1186/s13059-025-03828-8

Top 59%

0.257DataRank

Top 59%4 citations

Alden King-Yung Leung, Yutong Zhu, Li Yao, Avery Willis, Xiuqi Pan +10 more

Papers

Driven by 34 papers — median percentile 41. Top paper: “Current and future directions in network biology”.

Current and future directions in network biology

Bioinformatics Advances(2024)10.1093/bioadv/vbae099

N/A

1.6DataRank · unranked

100 citations

Michelle M. Li, Aydin Wells, Kimberly Glass, Deisy Morselli Gysi, Krishnan, Arjun +32 more

Structural basis of TRAPPIII‐mediated Rab1 activation

The EMBO Journal(2021)10.15252/embj.2020107607

N/A

1.4DataRank · unranked

44 citations

Ben P. Phillips, Kumar Yugandhar, Ethan J. Sanford, Marcus B. Smolka, Haiyuan Yu +3 more

Maximized quantitative phosphoproteomics allows high confidence dissection of the DNA damage signaling network

Scientific Reports(2020)10.1038/s41598-020-74939-4

N/A

0.529DataRank · unranked

33 citations

Ethan J. Sanford, Jennifer Tieu, William Comstock, Shagun Gupta, Shannon Marshall +3 more

Dissecting the cis-regulatory syntax of transcription initiation with deep learning

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.28.596138

N/A

0.505DataRank · unranked

28 citations

Melody Yin, Anika Mantripragada, Jacob Matthew Schreiber, Georgi K. Marinov, Sagar Shah +4 more

Functional genomic assays to annotate enhancer–promoter interactions genome wide

Human Molecular Genetics(2022)10.1093/hmg/ddac204

N/A

0.360DataRank · unranked

10 citations

Yao Li, Haiyuan Yu, Alden King-Yung Leung

Comprehensive evaluation of diverse massively parallel reporter assays to functionally characterize human enhancers genome-wide

Genome biology(2025)10.1186/s13059-025-03828-8

Top 59%

0.257DataRank

Top 59%4 citations

Alden King-Yung Leung, Yutong Zhu, Li Yao, Avery Willis, Xiuqi Pan +10 more

Combining genetics with real-world patient data enables ancestry-specific target identification and drug discovery in Alzheimer’s disease

Research Square(2025)10.21203/rs.3.rs-5716817/v1

N/A

0.208DataRank · unranked

3 citations

Yuan Hou, Pengyue Zhang, Yi‐Chen Li, Noah Lorincz‐Comi, Fan Fan +27 more

Current and future directions in network biology

arXiv (Cornell University)(2023)10.48550/arxiv.2309.08478

N/A

0.208DataRank · unranked

3 citations

Michelle M. Li, Aydin Wells, Kimberly Glass, Deisy Morselli Gysi, Krishnan, Arjun +32 more

A multiscale functional map of somatic mutations in cancer integrating protein structure and network topology

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.06.531441

N/A

0.104DataRank · unranked

1 citations

Alden King-Yung Leung, Jin Joo Kang, Yu Sun, Guanxi Wu, Le Li +9 more

Progress in methodologies and quality‐control strategies in protein cross‐linking mass spectrometry

PROTEOMICS(2021)10.1002/pmic.202100145

N/A

0DataRank · unranked

11 citations

Qiuye Zhao, Shobhita Gupta, Dapeng Xiong, Haiyuan Yu, Kumar Yugandhar

Handcuffing intrinsically disordered regions in Mlh1–Pms1 disrupts mismatch repair

Nucleic Acids Research(2021)10.1093/nar/gkab694

N/A

0DataRank · unranked

10 citations

Ting‐Yi Wang, Qiuye Zhao, Kumar Yugandhar, Haiyuan Yu, Eric Alani +1 more

Handcuffing intrinsically disordered regions in Mlh1-Pms1 disrupts mismatch repair

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.02.433678

N/A

0DataRank · unranked

2 citations

Ting‐Yi Wang, Qiuye Zhao, Kumar Yugandhar, Haiyuan Yu, Eric Alani +1 more

A comprehensive SARS-CoV-2–human protein–protein interactome reveals COVID-19 pathobiology and potential host therapeutic targets

Nature Biotechnology(2022)10.1038/s41587-022-01474-0

N/A

0DataRank · unranked

203 citations

Yuan Liu, Shagun Gupta, Mauricio I. Paramo, Yuan Hou, Chengsheng Mao +18 more

Progranulin-derived granulin E and lysosome membrane protein CD68 interact to reciprocally regulate their protein homeostasis

Journal of Biological Chemistry(2022)10.1016/j.jbc.2022.102348

N/A

0DataRank · unranked

12 citations

Daniel H. Paushter, Tingting Zhang, Xiaochun Wu, Tuancheng Feng, Jiaoying Lou +6 more

In vivo versus in silico assessment of potentially pathogenic missense variants in human reproductive genes

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2219925120

N/A

0DataRank · unranked

16 citations

Priti Singh, Kerry J. Schimenti, Tina N. Tran, Robert Fragoza, Jimmaline J. Hardy +8 more

Finding Needles in the Haystack: Strategies for Uncovering Noncoding Regulatory Variants

Annual Review of Genetics(2023)10.1146/annurev-genet-030723-120717

N/A

0DataRank · unranked

2 citations

Mauricio I. Paramo, Yingying Zhang, Yao Li, Sagar R. Shah, Yiyang Jin +4 more

Phosphoribosyl modification of poly-ubiquitin chains at the Legionella-containing vacuole prohibiting autophagy adaptor recognition

Research Square(2023)10.21203/rs.3.rs-3266941/v1

N/A

0DataRank · unranked

2 citations

Min Wan, Marena Minelli, Qiuye Zhao, Shannon Marshall, Haiyuan Yu +2 more

Phosphoribosyl modification of poly-ubiquitin chains at the Legionella-containing vacuole prohibiting autophagy adaptor recognition

Nature Communications(2024)10.1038/s41467-024-51273-1

N/A

0DataRank · unranked

21 citations

Marena E. Minelli, Qiuye Zhao, Shannon Marshall, Haiyuan Yu, Marcus B. Smolka +2 more

Loss of Kmt2c or Kmt2d primes urothelium for tumorigenesis and redistributes KMT2A–menin to bivalent promoters

Nature Genetics(2025)10.1038/s41588-024-02015-y

N/A

0DataRank · unranked

17 citations

Mohini R. Pachai, Dan Li, Cindy J. Lee, Sarah Warda, Makhzuna N. Khudoynazarova +25 more

A multiscale functional map of somatic mutations in cancer integrating protein structure and network topology

Nature Communications(2025)10.1038/s41467-024-54176-3

N/A

0DataRank · unranked

4 citations

Alden King-Yung Leung, Jin Joo Kang, Yu Sun, Guanxi Wu, Le Li +9 more

The Deformability of the Mammalian Cell Nucleus is Determined by the Identity of the Lamin Rod Domain

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.22.666133

N/A

0DataRank · unranked

7 citations

Yuliang Tang, Yogeshwari S. Ambekar, Gururaj Rao Kidiyoor, Hassan Saadi, Graeme F. Woodworth +5 more

Simultaneous measurement of intrinsic promoter and enhancer potential reveals principles of functional duality and regulatory reciprocity

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.03.14.643265

N/A

0DataRank · unranked

0 citations

Alden King-Yung Leung, Sagar R. Shah, Junke Zhang, Nathaniel D. Tippens, Jin Liang +7 more

Simultaneous measurement of intrinsic promoter and enhancer potential reveals principles of functional duality and regulatory reciprocity

Research Square(2025)10.21203/rs.3.rs-6363545/v1

N/A

0DataRank · unranked

0 citations

Mauricio I. Paramo, Alden King-Yung Leung, Sagar Shah, J. Zhang, Nathaniel D. Tippens +7 more

Disease-specific variant pathogenicity prediction using multimodal biomedical language models

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.09.675184

N/A

0DataRank · unranked

0 citations

D.N. Cooper, Haiyuan Yu, Yilin Liu

SAAMBE-3D: Predicting Effect of Mutations on Protein–Protein Interactions

International Journal of Molecular Sciences(2020)10.3390/ijms21072563

N/A

0DataRank · unranked

126 citations

Gen Li, Adithya Krishna Murthy, Siqi Liang, Robert Fragoza, Haiyuan Yu +2 more

Phosphatidylserine and RhoB connect phosphatidylinositol 4-phosphate and phosphatidic acid metabolism at the plasma membrane

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.30.679611

N/A

0DataRank · unranked

0 citations

Yeun Ju Kim, Xiaofu Cao, Timothy W. Bumpus, Mira Sohn, Matthew Tyler Menold +9 more

BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain

Cell Systems(2020)10.1016/j.cels.2020.03.003

N/A

0DataRank · unranked

87 citations

Peter E.A. Ash, Sadhna Phanse, Florian Goebels, Lucas ZhongMing Hu, Siwei Chen +30 more

SAAMBE-SEQ: a sequence-based method for predicting mutation effect on protein–protein binding affinity

Bioinformatics(2020)10.1093/bioinformatics/btaa761

N/A

0DataRank · unranked

43 citations

Swagata Pahari, Adithya Krishna Murthy, Siqi Liang, Robert Fragoza, Haiyuan Yu +2 more

Variants in RABL2A causing male infertility and ciliopathy

Human Molecular Genetics(2020)10.1093/hmg/ddaa230

N/A

0DataRank · unranked

17 citations

Robert Fragoza, Priti Singh, Shu Zhang, Haiyuan Yu, John C. Schimenti +1 more

Glucosylation by the Legionella Effector SetA Promotes the Nuclear Localization of the Transcription Factor TFEB

iScience(2020)10.1016/j.isci.2020.101300

N/A

0DataRank · unranked

26 citations

Dong-Sung Kim, Jishnu Das, Haiyuan Yu, Marcus B. Smolka, Yuxin Mao +1 more

Structure and mechanism of TRAPPIII-mediated Rab1 activation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.08.332312

N/A

0DataRank · unranked

2 citations

Ben P. Phillips, Kumar Yugandhar, Ethan J. Sanford, Marcus B. Smolka, Haiyuan Yu +3 more

Variants in RABL2A causing male infertility and ciliopathy

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.11.246611

N/A

0DataRank · unranked

0 citations

Robert Fragoza, Priti Singh, Shu Zhang, Haiyuan Yu, John C. Schimenti +1 more

Implications of disease-related mutations at protein–protein interfaces

Current Opinion in Structural Biology(2021)10.1016/j.sbi.2021.11.012

N/A

0DataRank · unranked

41 citations

Dongjin Lee, Le Li, Qiuye Zhao, Haiyuan Yu, Dapeng Xiong

A 3D structural SARS-CoV-2–human interactome to explore genetic and drug perturbations

Nature Methods(2021)10.1038/s41592-021-01318-w

N/A

0DataRank · unranked

31 citations

Siqi Liang, Yuan Liu, You Chen, Shagun Gupta, Nicole M. André +4 more

Haiyuan Yu

Indexed papers

Top data-sharing exemplar

Papers