Multicellular, IVT-derived, unmodified human transcriptome for nanopore-direct RNA analysis is a dataset published in Gigabyte (2024). On theSindex it has a DataRank of 0.713, placing it in the top 28.1% of the data-sharing corpus. It has been cited 19 times, with 13 citing works in its 1-hop citation network. Its calibrated FAIR score is 50/100.
Ranks in the top 28% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“FASTQ files and Fast5 raw data generated in this work have been made publicly available in NIH NCBI-SRA under the BioProject accession PRJNA947135.”— not found in the paper; verdict downgraded
The paper provides a persistent identifier in the form of a BioProject accession (PRJNA947135), which is a PID scheme. [downgraded to 'partial' — no verifiable quote from the paper]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“FASTQ files and Fast5 raw data generated in this work have been made publicly available in NIH NCBI-SRA under the BioProject accession PRJNA947135.”— not found in the paper; verdict downgraded
The paper names NIH NCBI-SRA (a repository listed in re3data/FAIRsharing) as the holder of the data. [downgraded to 'partial' — no verifiable quote from the paper]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“McCormick CA, Akeson S, Tavakoli S et al. Supporting data for "Multicellular, IVT-derived, unmodified human transcriptome for nanopore-direct RNA analysis". GigaScience Database, 2024; https://doi.org/10.5524/102532.”— not found in the paper; verdict downgraded
The dataset identifier appears as a reference-list entry in the bibliography. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The datasets supporting the results of this article are available in the RouhanifardLab/PanHumanIVT GitHub repository [27]. Additional data and code snapshots are in Zenodo [28] and GigaDB [24]. FASTQ files and Fast5 raw data generated in this work have been made publicly available in NIH NCBI-SRA under the BioProject accession PRJNA947135.”— not found in the paper; verdict downgraded
The data availability statement points to repositories with accessions and DOIs, fulfilling Colavizza category 3. [downgraded to 'partial' — no verifiable quote from the paper]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“We observed 17,038 unique genes aligned with at least one DRS read from the panIVT comprising 85.69% of all human protein-coding genes in Gencode v45.”
The dataset's content is described in running prose rather than an itemized inventory, table, or section heading listing files or variables. [majority verdict 'partial' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“FASTQ files and Fast5 raw data generated in this work have been made publicly available in NIH NCBI-SRA under the BioProject accession PRJNA947135.”— not found in the paper; verdict downgraded
The sentence states unconditional public availability of the data with no stated precondition. [downgraded to 'partial' — no verifiable quote from the paper]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“FASTQ files and Fast5 raw data generated in this work have been made publicly available in NIH NCBI-SRA under the BioProject accession PRJNA947135.”— not found in the paper; verdict downgraded
The paper uses the phrase 'publicly available' which is a natural-language synonym for open access. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
“The authors declare that ethical approval was not required for this type of research.”
The data are not sensitive or human-subject, and no gatekeeper is named; the ethics statement confirms no human subjects.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No sentence in the paper states how long the data will remain available or mentions a retention period. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“FASTQ files and Fast5 raw data”
FASTQ and Fast5 are open, community-standard file formats for sequencing data. [majority verdict 'yes' (3/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
“Basecalled reads were aligned with minimap2 (v2.24) to the GRCh38.p10 reference genome and Gencode.v45 transcript sequences.”— not found in the paper; verdict downgraded
The paper names GENCODE (v45) and GRCh38.p10, which are community-standard reference annotations and genome assemblies. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (2/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“HeLa biological DRS raw data was sourced from NIH NCBI-SRA BioProject: PRJNA777450.”
The paper provides an identifier (PRJNA777450) for a third-party dataset that the work builds upon. [majority verdict 'yes' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper does not explicitly state a reuse license for the dataset; only the article's CC-BY license is mentioned, which applies to the text, not the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is provided for the dataset itself; the code has a version but the data does not. [majority verdict 'no' (2/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Project home page: https://github.com/RouhanifardLab/PanHumanIVT • DOI: https://doi.org/10.5281/zenodo.7976171”
The paper provides a machine-resolvable locator (GitHub URL and Zenodo DOI) for the study's own code. [majority verdict 'yes' (3/5 passes agreed)]
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“SHR acknowledges support from NIH 5R01HG011087, NIH R01HG012856, and support through an Opportunity Fund by the Technology Development Coordinating Center at Jackson Laboratories (NHGRI federal award no. U24HG011735).”
The paper gives specific award/grant numbers (e.g., 5R01HG011087) attached to named funders. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“DRS runs were base called with Guppy v6.4.2 (RRID:SCR_023196) using the high accuracy model and the default basecalling quality-score filter Q ≥ 7”
The paper names specific software (Guppy with version) used to produce the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
The paper does not name a README, data dictionary, or codebook that accompanies the data, nor does it define variables for the released raw data files. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.449
From this paper's citation signal
Citation Network Contribution
0.264
From 11 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 13 citers.
NIH
Grant: 5R01HG011087
NIH
Grant: R01HG012856
Technology Development Coordinating Center at Jackson Laboratories
Grant: U24HG011735
NHGRI NIH HHS
Grant: R01 HG011087
National Institutes of Health
Grant: 1U24HG011735-01
Genome Technologies Coordinating Center
National Institutes of Health
Grant: 1R01HG012856-01
Synthetic mRNA Control Set for Nanopore-Based Pseudouridine Modification Profiling in Human Transcriptomes
National Institutes of Health
Grant: 5R01HG011087-02
Single-cell direct RNA sequencing using electrical zero-mode waveguides and engineered reverse transcriptases
National Institutes of Health
Grant: 1R01HG011087-01
Single-cell direct RNA sequencing using electrical zero-mode waveguides and engineered reverse transcriptases
FWCI
2.78
Citation Percentile
0.9%
Citation Trend
Fields of Study
Keywords