Miten Jain

Also affiliated with National Institutes of Health, National Institute of Neurological Disorders and Stroke, National Institute on Aging, Universidad del Noreste

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

14.8Author DataRank

Indexed papers

9in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 9 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x

Top 4%

5.1DataRank

Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Papers

Driven by 56 papers — median percentile 72. Top paper: “Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes”.

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

Nature Biotechnology(2020)10.1038/s41587-020-0503-6

N/A

12.8DataRank · unranked

655 citations

Trevor Pesout, Ryan Lorig-Roach, Marina Haukness, Hugh E. Olsen, Colleen M. Bosworth +27 more

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x

Top 4%

5.1DataRank

Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Pangenome graph construction from genome alignments with Minigraph-Cactus

Nature Biotechnology(2023)10.1038/s41587-023-01793-w

N/A

5.0DataRank · unranked

318 citations

Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao +94 more

Epigenetic patterns in a complete human genome

Science(2022)10.1126/science.abj5089

Top 6%

3.9DataRank

Top 6%322 citations

Michael E.G. Sauria, Xavi Guitart, Mitchell R. Vollger, Paul W. Hook, Savannah J. Hoyt +15 more

precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.13.380741

Top 11%

2.0DataRank

Top 11%67 citations

Justin Wagner, Jennifer McDaniel, Sarah H. Stephens, Samuel T. Westreich, Anish G. Prasanna +68 more

High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation

Genome Research(2024)10.1101/gr.279273.124

Top 13%

1.7DataRank

Top 13%78 citations

Sophia B Gibson, Nikhita Damaraju, Miranda Pg Zalusky, Kendra Hoekzema, David Twesigomwe +42 more

Multicellular, IVT-derived, unmodified human transcriptome for nanopore-direct RNA analysis

Gigabyte(2024)10.46471/gigabyte.129

Top 28%

0.713DataRank

Top 28%19 citations

Stuart Akeson, Sepideh Tavakoli, Dylan Bloch, Isabel N. Klink, Miten Jain +2 more

A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery

Cell Systems(2021)10.1016/j.cels.2021.05.021

N/A

0.564DataRank · unranked

42 citations

David Haan, Kristen D. Dang, Kami Chiotti, Matthew Inkman, Andrew Lamb +32 more

Local read haplotagging enables accurate long-read small variant calling

Nature Communications(2024)10.1038/s41467-024-50079-5

N/A

0.457DataRank · unranked

20 citations

Daniel E. Cook, Maria Nattestad, Lucas Brambrink, Brandy McNulty, John E. Gorzynski +9 more

Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair

Scientific Data(2025)10.1038/s41597-025-05438-2

Top 44%

0.421DataRank

Top 44%10 citations

Vaidehi Patel, Nathan D. Olson, Hua‐Jun He, Anthony Schmitt, Kenneth D. Cole +80 more

A phenome-wide association study of methylated GC-rich repeats identifies a GCC repeat expansion in AFF3 associated with intellectual disability

Nature Genetics(2024)10.1038/s41588-024-01917-1

N/A

0.373DataRank · unranked

11 citations

Paras Garg, Joke J.F.A. van Vugt, Kristina Ibáñez, Delia Gagliardi, William Lee +19 more

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100543

Top 50%

0.352DataRank

Top 50%6 citations

Stephanie Greer, Dmitri S. Pavlichin, Bo Zhou, Alexander E. Urban, Tsachy Weissman +94 more

Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.18.613544

Top 54%

0.314DataRank

Top 54%6 citations

Vaidehi Patel, Nathan D. Olson, Hua‐Jun He, Kenneth D. Cole, Alexander A. Gooden +78 more

Genomic in vitro transcription and Nanopore direct RNA sequencing of a human B-Lymphocyte cell line

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.25.650674

Top 54%

0.312DataRank

Top 54%7 citations

Stuart Akeson, Neda Ghohabi Esfahani, Andrew Stein, Kshitij Amar, Urja Choudhary +2 more

Clair3-RNA: a deep learning-based small variant caller for long-read RNA sequencing data

Nature Communications(2025)10.1038/s41467-025-67237-y

N/A

0.312DataRank · unranked

7 citations

Xian Yu, Lei Chen, Yan-Lam Lee, Cheng Xin, Angel On Ki Wong +5 more

Local read haplotagging enables accurate long-read small variant calling

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.07.556731

N/A

0.241DataRank · unranked

4 citations

Daniel E. Cook, Maria Nattestad, Brandy McNulty, John E. Gorzynski, Sneha D. Goenka +8 more

Long-read sequencing identifies FGF14 repeat expansions in Parkinson’s disease

medRxiv(2025)10.1101/2025.08.14.25333596

N/A

0.165DataRank · unranked

2 citations

Kensuke Daida, Lara M. Lange, Abraham Moller, Abigail Miano‐Burkhardt, Laksh Malik +22 more

Haplotype-Resolved DNA Methylation at the APOE Locus identifies Allele-Specific Epigenetic Signatures Relevant to Alzheimer’s Disease Risk

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.01.662592

N/A

0.104DataRank · unranked

1 citations

Melissa Meredith, Abraham Moller, Cory A. Weller, Kensuke Daida, Alexis Ayuketah +18 more

Nanopore ReCappable Sequencing maps SARS-CoV-2 5′ capping sites and provides new insights into the structure of sgRNAs

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.24.469860

N/A

0DataRank · unranked

0 citations

Logan Mulroney, Adrien Léger, Matteo Castelli, Elena Criscuolo, Maia Kavanagh Williamson +20 more

Advances in nanopore direct RNA sequencing

Nature Methods(2022)10.1038/s41592-022-01633-w

N/A

0DataRank · unranked

226 citations

Robin Abu-Shumays, Hugh E. Olsen, Mark Akeson, Miten Jain

Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing

Nature Biotechnology(2022)10.1038/s41587-022-01221-5

N/A

0DataRank · unranked

121 citations

John E. Gorzynski, Kishwar Shafin, Dianna G. Fisk, Trevor Pesout, Tanner Jensen +24 more

Nanopore ReCappable sequencing maps SARS-CoV-2 5′ capping sites and provides new insights into the structure of sgRNAs

Nucleic Acids Research(2022)10.1093/nar/gkac144

N/A

0DataRank · unranked

29 citations

Logan Mulroney, Adrien Léger, Matteo Castelli, Elena Criscuolo, Maia Kavanagh Williamson +20 more

Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation

Nature Methods(2023)10.1038/s41592-023-01993-x

N/A

0DataRank · unranked

143 citations

Kimberley J. Billingsley, Mira Mastoras, Melissa Meredith, Jean Monlong, Ryan Lorig-Roach +25 more

Profiling of repetitive RNA sequences in the blood plasma of patients with cancer

Nature Biomedical Engineering(2023)10.1038/s41551-023-01081-7

N/A

0DataRank · unranked

49 citations

Sreelakshmi Velandi Maroli, Vikas Peddu, Andrew E. Davidson, Alexander Hill, Erin LaMontagne +5 more

Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.12.523790

N/A

0DataRank · unranked

31 citations

Kimberley J. Billingsley, Mira Mastoras, Melissa Meredith, Jean Monlong, Ryan Lorig-Roach +25 more

Phased nanopore assembly with Shasta and modular graph phasing with GFAse

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.21.529152

N/A

0DataRank · unranked

13 citations

Melissa Meredith, Jean Monlong, Miten Jain, Hugh E. Olsen, Brandy McNulty +18 more

Multicellular, IVT-derived, unmodified human transcriptome for nanopore-direct RNA analysis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.06.535889

N/A

0DataRank · unranked

10 citations

Stuart Akeson, Sepideh Tavakoli, Dylan Bloch, Isabel N. Klink, Miten Jain +2 more

A phenome-wide association study of methylated GC-rich repeats identifies a GCC repeat expansion in AFF3 as a significant cause of intellectual disability

medRxiv(2023)10.1101/2023.05.03.23289461

N/A

0DataRank · unranked

7 citations

Paras Garg, Joke J.F.A. van Vugt, Kristina Ibáñez, Delia Gagliardi, William Lee +16 more

Multi-pass, single-molecule nanopore reading of long protein strands

Nature(2024)10.1038/s41586-024-07935-7

N/A

0DataRank · unranked

136 citations

Daphne Kontogiorgos-Heintz, Jasmine Wee, Kyoko Kurihara, Sangbeom Yang, Gwendolin Roote +8 more

Combining Nanopore direct RNA sequencing with genetics and mass spectrometry for analysis of T-loop base modifications across 42 yeast tRNA isoacceptors

Nucleic Acids Research(2024)10.1093/nar/gkae796

N/A

0DataRank · unranked

31 citations

Niki K. Thomas, Joshua D. Jones, Robin Abu-Shumays, Abigail L Vaaler, Mark Akeson +4 more

Phased nanopore assembly with Shasta and modular graph phasing with GFAse

Genome Research(2024)10.1101/gr.278268.123

N/A

0DataRank · unranked

16 citations

Melissa Meredith, Jean Monlong, Miten Jain, Hugh E. Olsen, Brandy McNulty +18 more

mRNA psi profiling using nanopore DRS reveals cell type-specific pseudouridylation and translational regulation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.08.593203

N/A

0DataRank · unranked

11 citations

Michele Meseonznik, Yuchen Qiu, Oleksandra Fanari, Mitchell Thomas, Yifang Liu +6 more

Clair3-RNA: A deep learning-based small variant caller for long-read RNA sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.17.624050

N/A

0DataRank · unranked

10 citations

Xian Yu, Lei Chen, Yan-Lam Lee, Xin Cheng, Angel On Ki Wong +5 more

Probing enzyme-dependent pseudouridylation using direct RNA sequencing to assess neuronal epitranscriptome plasticity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.26.586895

N/A

0DataRank · unranked

3 citations

Sepideh Tavakoli, Yuchen Qiu, Amr Makhamreh, Keqing Nian, Stuart Akeson +9 more

Probing enzyme-dependent pseudouridylation using direct RNA sequencing to assess epitranscriptome plasticity in a neuronal cell line

Cell Systems(2025)10.1016/j.cels.2025.101238

N/A

0DataRank · unranked

10 citations

Sepideh Tavakoli, Yuchen Qiu, Amr Makhamreh, Keqing Nian, Stuart Akeson +9 more

Long-read sequencing identifies FGF14 repeat expansions in Parkinson’s disease

Brain(2025)10.1093/brain/awaf456

N/A

0DataRank · unranked

1 citations

Kensuke Daida, Lara M. Lange, Abraham Moller, Abigail Miano‐Burkhardt, Laksh Malik +22 more

Assessing DNA methylation detection for primary human tissue using Nanopore sequencing

Genome Research(2025)10.1101/gr.279159.124

N/A

0DataRank · unranked

10 citations

Stuart Akeson, Melissa Meredith, Pilar Álvarez Jerez, Laksh Malik, Breeana Baker +7 more

tRNA isodecoder analysis using Nanopore ionic current signals and deep learning

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.27.696718

N/A

0DataRank · unranked

3 citations

Pooria Daneshvar Kakhaki, Neda Ghohabi Esfahani, James W. Reinsch, Margaret L Barry, Maddy P. Zamecnik +6 more

Long-Read epigenetic clocks identify improved brain aging predictions

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.30.679553

N/A

0DataRank · unranked

1 citations

Mary B. Makarious, Melissa Meredith, Abraham Moller, Melissa Grant‐Peters, Amy R. Hicks +13 more

CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma

Genome biology(2020)10.1186/s13059-020-01995-4

N/A

0DataRank · unranked

159 citations

Martina Malatesta, Brian V. Lien, Parna Saha, Shivani S. Thombare, Sung Jun Hong +16 more

A Survey of Rare Epigenetic Variation in 23,116 Human Genomes Identifies Disease-Relevant Epivariations and CGG Expansions

The American Journal of Human Genetics(2020)10.1016/j.ajhg.2020.08.019

N/A

0DataRank · unranked

68 citations

Bharati Jadhav, Oscar L. Rodriguez, Nihir Patel, Alejandro Martin-Trujillo, Miten Jain +8 more

Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function

GigaScience(2020)10.1093/gigascience/giaa053

N/A

0DataRank · unranked

66 citations

David Eccles, Justin O’Grady, Devin M. Drown, Lars Hestbjerg Hansen, Tue Kjærgaard Nielsen +17 more

Permutational analysis of Saccharomyces cerevisiae regulatory elements

Synthetic Biology(2020)10.1093/synbio/ysaa007

N/A

0DataRank · unranked

13 citations

Robert Shelansky, Brent Townshend, Miten Jain, Hinrich Boeger, Drew Endy +2 more

Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts

Bioinformatics(2020)10.1093/bioinformatics/btaa601

N/A

0DataRank · unranked

29 citations

Andrew D. Bailey, Miten Jain, Hugh E. Olsen, Benedict Paten, Hongxu Ding

Inflammation Drives Alternative First Exon usage to Regulate Immune Genes including a Novel Iron Regulated Isoform of Aim2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.06.190330

N/A

0DataRank · unranked

6 citations

Pratibha Jagannatha, Sergio Covarrubias, Matthew A. Cattle, Rojin Safavi, Ran Song +10 more

Identification of high confidence human poly(A) RNA isoform scaffolds using nanopore sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.18.389049

N/A

0DataRank · unranked

4 citations

Madalee G. Wulf, Ira Schildkraut, George Tzertzinis, J. A. Buswell, Miten Jain +6 more

A survey of rare epigenetic variation in 23,116 human genomes identifies disease-relevant epivariations and novel CGG expansions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.25.007864

N/A

0DataRank · unranked

0 citations

Bharati Jadhav, Oscar L. Rodriguez, Nihir Patel, Alejandro Martin-Trujillo, Miten Jain +8 more

Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads

Nature Methods(2021)10.1038/s41592-021-01299-w

N/A

0DataRank · unranked

332 citations

Trevor Pesout, Pi-Chuan Chang, Maria Nattestad, Alexey Kolesnikov, Sidharth Goel +9 more

Direct Nanopore Sequencing of Individual Full Length tRNA Strands

ACS Nano(2021)10.1021/acsnano.1c06488

N/A

0DataRank · unranked

130 citations

Vinay Chaitanya Poodari, Miten Jain, Hugh E. Olsen, Mark Akeson, Robin Abu-Shumays +1 more

Pervasive cis effects of variation in copy number of large tandem repeats on local DNA methylation and gene expression

The American Journal of Human Genetics(2021)10.1016/j.ajhg.2021.03.016

N/A

0DataRank · unranked

47 citations

Alejandro Martin-Trujillo, Oscar L. Rodriguez, Scott J Gies, Elina Hadelia, Bharati Jadhav +4 more

Identification of high-confidence human poly(A) RNA isoform scaffolds using nanopore sequencing

RNA(2021)10.1261/rna.078703.121

N/A

0DataRank · unranked

29 citations

Madalee G. Wulf, Ira Schildkraut, George Tzertzinis, J. A. Buswell, Miten Jain +6 more

Synthesis of modified nucleotide polymers by the poly(U) polymerase Cid1: application to direct RNA sequencing on nanopores

RNA(2021)10.1261/rna.078898.121

N/A

0DataRank · unranked

20 citations

Logan Mulroney, Jen Quick-Cleveland, Miten Jain, Mark Akeson, Manuel Ares +1 more

Haplotype-aware variant calling enables high accuracy in nanopore long-reads using deep neural networks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.04.433952

N/A

0DataRank · unranked

32 citations

Trevor Pesout, Pi-Chuan Chang, Maria Nattestad, Alexey Kolesnikov, Sidharth Goel +8 more

Direct Nanopore Sequencing of Individual Full Length tRNA Strands

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.26.441285

N/A

0DataRank · unranked

9 citations

Vinay Chaitanya Poodari, Miten Jain, Hugh E. Olsen, Mark Akeson, Robin Abu-Shumays +1 more

A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.05.438352

N/A

0DataRank · unranked

7 citations

Angie S. Hinrichs, Miten Jain, Namrita Dhillon, Scott La, Joshua D. Kapp +17 more

Synthesis of modified nucleotide polymers by the poly(U) polymerase Cid1: Application to direct RNA sequencing on nanopores

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.06.451372

N/A

0DataRank · unranked

1 citations

Logan Mulroney, Jen Quick-Cleveland, Miten Jain, Mark Akeson, Manuel Ares +1 more

Miten Jain

Indexed papers

Top data-sharing exemplar

Papers