Austin D. Swafford

Also affiliated with University of California San Diego, International Biomedical (United States)

Biochemistry, Genetics and Molecular BiologyNeuroscienceEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

3.0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity

Nature Microbiology(2022)10.1038/s41564-022-01266-x

Top 7%

3.0DataRank

Top 7%191 citations

Louis‐Félix Nothias, Luke Thompson, Jon G. Sanders, Rodolfo A. Salido, Sneha Couvillion +89 more

Papers

Driven by 35 papers — median percentile 93. Top paper: “Mass spectrometry searches using MASST”.

Mass spectrometry searches using MASST

Nature Biotechnology(2020)10.1038/s41587-019-0375-9

N/A

6.2DataRank · unranked

298 citations

Alan K. Jarmusch, Fernando Vargas, Alexander A. Aksenov, Julia M. Gauglitz, Kelly C. Weldon +31 more

Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity

Nature Microbiology(2022)10.1038/s41564-022-01266-x

Top 7%

3.0DataRank

Top 7%191 citations

Louis‐Félix Nothias, Luke Thompson, Jon G. Sanders, Rodolfo A. Salido, Sneha Couvillion +89 more

Oral mucosal breaks trigger anti-citrullinated bacterial and human protein antibody responses in rheumatoid arthritis

Science Translational Medicine(2023)10.1126/scitranslmed.abq8476

N/A

2.2DataRank · unranked

107 citations

Tobias V. Lanz, Caryn Hale, Gregory D. Sepich‐Poore, Cameron Martino, Austin D. Swafford +30 more

High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy

mSystems(2020)10.1128/msystems.00292-20

N/A

2.1DataRank · unranked

87 citations

Karla Vasco, Yoshiki Vázquez‐Baeza, Lingjing Jiang, James T. Morton, Danxun Li +10 more

Enhancing untargeted metabolomics using metadata-based source annotation

Nature Biotechnology(2022)10.1038/s41587-022-01368-1

N/A

2.0DataRank · unranked

79 citations

Kiana West, Wout Bittremieux, Candace L. Williams, Kelly C. Weldon, Morgan Panitchpakdi +68 more

A Comparison of Six DNA Extraction Protocols for 16S, ITS and Shotgun Metagenomic Sequencing of Microbial Communities

BioTechniques(2022)10.2144/btn-2022-0032

N/A

1.9DataRank · unranked

74 citations

Carolina S. Carpenter, Cameron Martino, Rodolfo A. Salido, Jeremiah J. Minich, MacKenzie Bryant +6 more

Qiita: rapid, web-enabled microbiome meta-analysis

Nature Methods(2018)10.1038/s41592-018-0141-9

N/A

0.982DataRank · unranked

697 citations

Jose A. Navas-Molina, Tomasz Kosciolek, Daniel McDonald, Yoshiki Vázquez-Baeza, Gail Ackermann +24 more

Human Skin, Oral, and Gut Microbiomes Predict Chronological Age

mSystems(2020)10.1128/msystems.00630-19

N/A

0.764DataRank · unranked

162 citations

Niina Haiminen, Anna Paola Carrieri, Rebecca Hu, Lingjing Jiang, Laxmi Parida +11 more

OGUs enable effective, phylogeny-aware analysis of even shallow metagenome community structures

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.04.438427

N/A

0.752DataRank · unranked

20 citations

Shi Huang, Antonio G. González, Imran McGrath, Daniel McDonald, Niina Haiminen +21 more

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy

mSystems(2022)10.1128/msystems.00167-22

N/A

0.727DataRank · unranked

126 citations

Shi Huang, Antonio González, Imran McGrath, Daniel McDonald, Niina Haiminen +21 more

Robustness of cancer microbiome signals over a broad range of methodological variation

Oncogene(2024)10.1038/s41388-024-02974-w

N/A

0.628DataRank · unranked

65 citations

Daniel McDonald, Evguenia Kopylova, Caitlin Guccione, Qiyun Zhu, George I. Austin +16 more

Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes

Genome Research(2021)10.1101/gr.275777.121

N/A

0.574DataRank · unranked

45 citations

Kalen Cantrell, Shi Huang, Daniel McDonald, Niina Haiminen, Anna Paola Carrieri +18 more

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment

Microbiome(2021)10.1186/s40168-020-00960-4

N/A

0.571DataRank · unranked

44 citations

Farhana Ali, Clarisse Marotz, Pedro Belda‐Ferre, Leslie Chiang, Justin P. Shaffer +9 more

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.17.238444

N/A

0.546DataRank · unranked

37 citations

Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Clarisse Marotz, Se Jin Song +31 more

Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References

mSystems(2022)10.1128/msystems.00758-22

N/A

0.457DataRank · unranked

20 citations

Stephen Wandro, Karsten Zengler, Lívia S. Zaramela, Brent Nowinski, Austin D. Swafford +6 more

Reference data based insights expand understanding of human metabolomes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.08.194159

N/A

0.360DataRank · unranked

10 citations

Wout Bittremieux, Candace L. Williams, Kelly C. Weldon, Morgan Panitchpakdi, Francesca Di Ottavio +59 more

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment

medRxiv(2020)10.1101/2020.05.12.20073577

N/A

0.345DataRank · unranked

9 citations

Farhana Ali, Clarisse Marotz, Pedro Belda‐Ferre, Leslie Chiang, Justin P. Shaffer +9 more

Multi-omics profiling of Earth’s biomes reveals patterns of diversity and co-occurrence in microbial and metabolite composition across environments

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.04.446988

N/A

0.330DataRank · unranked

8 citations

Louis‐Félix Nothias, Luke Thompson, Jon G. Sanders, Rodolfo A. Salido, Sneha Couvillion +45 more

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment

Research Square(2020)10.21203/rs.3.rs-56028/v1

N/A

0.208DataRank · unranked

3 citations

Farhana Ali, Clarisse Marotz, Pedro Belda‐Ferre, Leslie Chiang, Justin P. Shaffer +9 more

SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx

mBio(2025)10.1128/mbio.04015-24

N/A

0.208DataRank · unranked

3 citations

Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Robert Cooper, Alhosna Benjdia +60 more

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment

Research Square(2020)10.21203/rs.3.rs-56028/v2

N/A

0.165DataRank · unranked

2 citations

Farhana Ali, Clarisse Marotz, Pedro Belda‐Ferre, Leslie Chiang, Justin P. Shaffer +9 more

Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions

Cell(2022)10.1016/j.cell.2022.09.005

N/A

0DataRank · unranked

510 citations

Gregory D. Sepich‐Poore, Ilana Livyatan, Omer Asraf, Cameron Martino, Deborah Nejman +21 more

A Comparison of DNA/RNA Extraction Protocols for High-Throughput Sequencing of Microbial Communities

BioTechniques(2021)10.2144/btn-2020-0153

N/A

0DataRank · unranked

55 citations

Clarisse Marotz, Pedro Belda‐Ferre, Cameron Martino, Stephen Wandro, Mehrbod Estaki +13 more

Differing salivary microbiome diversity, community and diurnal rhythmicity in association with affective state and peripheral inflammation in adults

Brain Behavior and Immunity(2020)10.1016/j.bbi.2020.02.004

N/A

0DataRank · unranked

26 citations

Tomasz Kościółek, Clarisse Marotz, Gajender Aleti, Robert N. Guay-Ross, Seong-Hun Hong +5 more

Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides

BMC Microbiology(2022)10.1186/s12866-022-02483-4

N/A

0DataRank · unranked

20 citations

Jordan N. Kohn, Emily A. Troyer, Kelly C. Weldon, Shi Huang, Anupriya Tripathi +5 more

Metabolome-Informed Microbiome Analysis Refines Metadata Classifications and Reveals Unexpected Medication Transfer in Captive Cheetahs

mSystems(2020)10.1128/msystems.00635-19

N/A

0DataRank · unranked

15 citations

James T. Morton, Anupriya Tripathi, Shalisa Hansen, Michele Gaffney, Carolina S. Carpenter +8 more

Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention

Advanced Biology(2022)10.1002/adbi.202101313

N/A

0DataRank · unranked

6 citations

Julia M. Gauglitz, Stephen Wandro, Kelly C. Weldon, Megan M. Doty, Kristina Stillwell +11 more

Ulcerative Colitis Host-Microbiome Response to Hyperbaric Oxygen Therapy

medRxiv(2022)10.1101/2022.01.14.22269325

N/A

0DataRank · unranked

2 citations

Robert H. Mills, Melissa C. Kordahi, Marvic Carrillo-Terrazas, Henrry Secaira-Morocho, Christella E. Widjaja +31 more

Type I IFNs and CD8 T cells increase intestinal barrier permeability after chronic viral infection

The Journal of Experimental Medicine(2020)10.1084/jem.20192276

N/A

0DataRank · unranked

48 citations

Steven P. Nilsen, Gregory Humphrey, Tara Schwartz, Karenina Sanders, Austin D. Swafford +4 more

Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome

Microorganisms(2023)10.3390/microorganisms11041022

N/A

0DataRank · unranked

5 citations

Mohammad Sobhan Sheikh Andalibi, Stephen Wandro, Kelly C. Weldon, Gregory D. Sepich‐Poore, Carolina S. Carpenter +11 more

Gut microbiome in Schizophrenia: Altered functional pathways related to immune modulation and atherosclerotic risk

Brain Behavior and Immunity(2020)10.1016/j.bbi.2020.10.003

N/A

0DataRank · unranked

81 citations

Tomasz Kościółek, Rebecca E. Daly, Yoshiki Vázquez‐Baeza, Austin D. Swafford, Rob Knight +2 more

Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides

medRxiv(2021)10.1101/2021.08.10.21255754

N/A

0DataRank · unranked

1 citations

Jordan N. Kohn, Emily A. Troyer, Kelly C. Weldon, Shi Huang, Anupriya Tripathi +5 more

ChIP provides 10-fold microbial DNA enrichment from tissue while minimizing bias

Molecular Biology Reports(2025)10.1007/s11033-025-10330-8

N/A

0DataRank · unranked

4 citations

Jon G. Sanders, Se Jin Song, Sydney Lavoie, Austin D. Swafford, Caitlin Guccione +6 more

Reference data-set driven metabolomics

Research Square(2021)10.21203/rs.3.rs-654519/v1

N/A

0DataRank · unranked

0 citations

Kiana West, Wout Bittremieux, Candace L. Williams, Kelly C. Weldon, Morgan Panitchpakdi +69 more

Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides

Research Square(2021)10.21203/rs.3.rs-829379/v1

N/A

0DataRank · unranked

0 citations

Gajender Aleti, Jordan N. Kohn, Emily A. Troyer, Kelly C. Weldon, Shi Huang +5 more

Austin D. Swafford

Indexed papers

Top data-sharing exemplar

Papers