Alex K. Shalek

Also affiliated with Ragon Institute of MGH, MIT and Harvard, Harvard–MIT Division of Health Sciences and Technology, Massachusetts Institute of Technology

NursingMedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

9.3Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

Cell(2020)10.1016/j.cell.2020.03.053

Top 4%

5.6DataRank

Top 4%609 citations

Aviv Regev, Philipp Oberdoerffer, Tal Nawy, Anna Hupalowska, Jennifer E. Rood +92 more

Papers

Driven by 152 papers — median percentile 83. Top paper: “SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues”.

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues

Cell(2020)10.1016/j.cell.2020.04.035

N/A

14.1DataRank · unranked

2492 citations

Samuel J. Allon, Sarah K. Nyquist, Ian Mbano, Vincent N. Miao, Constantine N. Tzouanas +92 more

IFNγ-Dependent Tissue-Immune Homeostasis Is Co-opted in the Tumor Microenvironment

Cell(2017)10.1016/j.cell.2017.06.016

N/A

8.4DataRank · unranked

191 citations

Mayte Suárez-Fariñas, Benjamin Izar, Ruth Dannenfelser, Itay Tirosh, Yong Liu +28 more

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

Cell(2020)10.1016/j.cell.2020.03.053

Top 4%

5.6DataRank

Top 4%609 citations

Aviv Regev, Philipp Oberdoerffer, Tal Nawy, Anna Hupalowska, Jennifer E. Rood +92 more

Multimodal profiling of lung granulomas in macaques reveals cellular correlates of tuberculosis control

Immunity(2022)10.1016/j.immuni.2022.04.004

N/A

4.8DataRank · unranked

294 citations

Travis K. Hughes, Constantine N. Tzouanas, Marc H. Wadsworth, Ang A. Tu, Todd M. Gierahn +38 more

Integrated single-cell analysis of multicellular immune dynamics during hyperacute HIV-1 infection

Nature Medicine(2020)10.1038/s41591-020-0799-2

N/A

3.9DataRank · unranked

175 citations

Toby P. Aicher, Daniel Muema, Shaina L. Carroll, José Ordovás-Montañés, Vincent N. Miao +16 more

Leveraging polygenic enrichments of gene features to predict genes underlying complex traits and diseases

medRxiv(2020)10.1101/2020.09.08.20190561

N/A

3.4DataRank · unranked

132 citations

Jacob C. Ulirsch, Nathan Y. Cheng, Brian L. Trippe, Rebecca S. Fine, Jenkai Miao +24 more

The Human Cell Atlas White Paper

arXiv (Cornell University)(2018)10.17863/cam.40032

Top 10%

2.2DataRank

Top 10%41 citations

Sarah A. Teichmann, Orit Rozenblatt‐Rosen, Michael J. T. Stubbington, Kristin G. Ardlie, Ido Amit +76 more

Chronic lung diseases are associated with gene expression programs favoring SARS-CoV-2 entry and severity

Nature Communications(2021)10.1038/s41467-021-24467-0

N/A

2.0DataRank · unranked

43 citations

Nichelle I. Winters, Mei-i Chung, Chitra Joseph, Austin J. Gutierrez, Arun C. Habermann +67 more

Cellular and transcriptional diversity over the course of human lactation

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2121720119

N/A

1.5DataRank · unranked

70 citations

Patricia Gao, Tessa K. J. Haining, Michael R. Retchin, Yarden Golan, Riley S. Drake +8 more

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

Cell(2015)10.1016/j.cell.2015.05.002

N/A

1.3DataRank · unranked

7753 citations

Anindita Basu, Rahul Satija, Taras K. Oleksyk, Karthik Shekhar, Melissa Goldman +12 more

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

Science(2016)10.1126/science.aad0501

N/A

1.3DataRank · unranked

5121 citations

Benjamin Izar, Sanjay M. Prakadan, Marc H. Wadsworth, Daniel Treacy, John J. Trombetta +39 more

JAK inhibition in a patient with a STAT1 gain-of-function variant reveals STAT1 dysregulation as a common feature of aplastic anemia

Med(2022)10.1016/j.medj.2021.12.003

N/A

1.1DataRank · unranked

24 citations

Joshua M. Peters, Travis Hughes, Caleb A. Lareau, Leif S. Ludwig, Lucas R. Massoth +12 more

Alveolar macrophages in early stage COPD show functional deviations with properties of impaired immune activation

Frontiers in Immunology(2022)10.3389/fimmu.2022.917232

N/A

1.1DataRank · unranked

50 citations

Wataru Fujii, Theodore S. Kapellos, Erika Dudkin, Nico Reusch, Ari Horne +44 more

A human liver cell-based system modeling a clinical prognostic liver signature for therapeutic discovery

Nature Communications(2021)10.1038/s41467-021-25468-9

N/A

1.1DataRank · unranked

41 citations

Simonetta Bandiera, Naoto Fujiwara, Shen Li, Hussein El Saghire, Mirian Fernández-Vaquero +63 more

Deep profiling deconstructs features associated with memory CD8+ T cell tissue residence

Immunity(2024)10.1016/j.immuni.2024.11.007

N/A

1.1DataRank · unranked

49 citations

Zoë Steier, Mark Pierson, J. Michael Stolley, Stephen D. O’Flanagan, Andrew G. Soerens +13 more

Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/455451

N/A

1.1DataRank · unranked

19 citations

Moshe Biton, Keri M. Sullivan, Grace Burgin, Daniel B. Graham, Rebecca H. Herbst +24 more

Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis

Cell(2019)10.1016/j.cell.2019.06.029

N/A

1.1DataRank · unranked

1412 citations

Moshe Biton, Keri M. Sullivan, Grace Burgin, Daniel B. Graham, Rebecca H. Herbst +28 more

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

Nature(2013)10.1038/nature12172

N/A

1.1DataRank · unranked

1301 citations

Rahul Satija, Xian Adiconis, Rona S. Gertner, Jellert T. Gaublomme, Raktima Raychowdhury +14 more

Reconstructing and Reprogramming the Tumor-Propagating Potential of Glioblastoma Stem-like Cells

Cell(2014)10.1016/j.cell.2014.02.030

N/A

1.0DataRank · unranked

949 citations

Matthew A. Reyna, Daniel A. Gilchrist, Anoop P. Patel, Hiroaki Wakimoto, Samuel D. Rabkin +21 more

The tumor microenvironment drives transcriptional phenotypes and their plasticity in metastatic pancreatic cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.25.256214

N/A

0.986DataRank · unranked

10 citations

Peter Winter, Andrew W. Navia, Hannah L. Williams, Alan DenAdel, Radha L. Kalekar +36 more

Single-cell profiling of environmental enteropathy reveals signatures of epithelial remodeling and immune activation

Science Translational Medicine(2022)10.1126/scitranslmed.abi8633

N/A

0.969DataRank · unranked

32 citations

Simutanyi Mwakamui, Travis K. Hughes, Nolawit Mulugeta, Victor Mudenda, Ellen Besa +21 more

Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity

Cell(2015)10.1016/j.cell.2015.11.009

N/A

0.960DataRank · unranked

601 citations

Nir Yosef, Youjin Lee, Rona S. Gertner, Li V. Yang, Chuan Wu +9 more

Microenvironment drives cell state, plasticity, and drug response in pancreatic cancer

Cell(2021)10.1016/j.cell.2021.11.017

N/A

0.959DataRank · unranked

597 citations

Peter Winter, Andrew W. Navia, Hannah L. Williams, Alan DenAdel, Kristen E. Lowder +42 more

Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19

Immunity(2020)10.1016/j.immuni.2020.11.017

N/A

0.901DataRank · unranked

405 citations

Neha Mishra, Florian Tran, Thomas Bahmer, Lena Best, Johanna I. Blase +169 more

Deconstructing transcriptional heterogeneity in pluripotent stem cells

Nature(2014)10.1038/nature13920

N/A

0.893DataRank · unranked

384 citations

Patrick Cahan, Alex K. Shalek, Rahul Satija, A. Jay DaleyKeyser, Hu Li +11 more

Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration

Nature Communications(2019)10.1038/s41467-019-12780-8

N/A

0.880DataRank · unranked

352 citations

Shahin Mohammadi, Jose Davila-Velderrain, Brittany A. Goods, Tanina D. Cadwell, Yu Xing +8 more

Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses

Cell(2015)10.1016/j.cell.2015.08.027

N/A

0.878DataRank · unranked

347 citations

Nathan Haseley, Douglas Brown, Cristina Penaranda, John J. Trombetta, Rahul Satija +7 more

Author Correction: Systematic comparison of single-cell and single-nucleus RNA-sequencing methods

Nature Biotechnology(2020)10.1038/s41587-020-0534-z

N/A

0.875DataRank · unranked

16 citations

Xian Adiconis, Sean K. Simmons, Monika S. Kowalczyk, Cynthia C. Hession, Nemanja Despot Marjanovic +17 more

MR1-Restricted MAIT Cells From The Human Lung Mucosal Surface Have Distinct Phenotypic, Functional, and Transcriptomic Features That Are Preserved in HIV Infection

Frontiers in Immunology(2021)10.3389/fimmu.2021.631410

N/A

0.866DataRank · unranked

28 citations

Maphe Mthembu, Erin W. Meermeier, Sanjay M. Prakadan, Samuel W. Kazer, Thierry Bassett +13 more

Preparation of Single‐Cell RNA‐Seq Libraries for Next Generation Sequencing

Current Protocols in Molecular Biology(2014)10.1002/0471142727.mb0422s107

N/A

0.863DataRank · unranked

315 citations

David Gennert, Diana Lu, Rahul Satija, Alex K. Shalek, Prisca Liberali +1 more

Leveraging polygenic enrichments of gene features to predict genes underlying complex traits and diseases

Nature Genetics(2023)10.1038/s41588-023-01443-6

N/A

0.853DataRank · unranked

293 citations

Jacob C. Ulirsch, Nathan Y. Cheng, Brian L. Trippe, Rebecca S. Fine, Jenkai Miao +23 more

The commitment of the human cell atlas to humanity

Nature Communications(2024)10.1038/s41467-024-54306-x

Top 24%

0.847DataRank

Top 24%20 citations

Kristin G. Ardlie, Fabiana Arzuaga, Gordon A. Awandare, Samirkumar B. Amin, Alexander Bernier +38 more

Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial cell states

Nature Communications(2022)10.1038/s41467-021-27322-4

N/A

0.846DataRank · unranked

281 citations

H Weinstein, Paul Allegakoen, Marc H. Wadsworth, Jamie Xie, Heiko Yang +10 more

Mechanisms of Resistance to Oncogenic KRAS Inhibition in Pancreatic Cancer

Cancer Discovery(2024)10.1158/2159-8290.cd-24-0177

N/A

0.828DataRank · unranked

248 citations

Megan T. Hoffman, Laleh Abbassi, Ziyue Li, Francesca Paradiso, Brendan D. Parent +50 more

Systematic Discovery of TLR Signaling Components Delineates Viral-Sensing Circuits

Cell(2011)10.1016/j.cell.2011.10.022

N/A

0.781DataRank · unranked

182 citations

Philipp Mertins, Maxim N. Artyomov, Alex K. Shalek, Matteo Iannacone, Mark F. Ciaccio +21 more

Human airway mast cells proliferate and acquire distinct inflammation-driven phenotypes during type 2 inflammation

Science Immunology(2021)10.1126/sciimmunol.abb7221

N/A

0.776DataRank · unranked

176 citations

José Ordovás-Montañés, Samuel J. Allon, Kathleen M. Buchheit, Marko Vukovic, Tahereh Derakhshan +17 more

Nanowire-Mediated Delivery Enables Functional Interrogation of Primary Immune Cells: Application to the Analysis of Chronic Lymphocytic Leukemia

Nano Letters(2012)10.1021/nl3042917

N/A

0.776DataRank · unranked

175 citations

Jellert T. Gaublomme, Lili Wang, Nir Yosef, Nicolas Chevrier, Mette S. Andersen +12 more

Inflammasomes within Hyperactive Murine Dendritic Cells Stimulate Long-Lived T Cell-Mediated Anti-tumor Immunity

Cell Reports(2020)10.1016/j.celrep.2020.108381

N/A

0.767DataRank · unranked

165 citations

Francesco Borriello, Ohn A. Chow, Benjamin A. Doran, Ira Fleming, Derek J. Theisen +6 more

PI3Kβ controls immune evasion in PTEN-deficient breast tumours

Nature(2023)10.1038/s41586-023-05940-w

N/A

0.741DataRank · unranked

139 citations

Qiwei Wang, Qi Wang, Michelle L. Ramseier, Sanjay M. Prakadan, Weihua Wang +17 more

PI3K activation allows immune evasion by promoting an inhibitory myeloid tumor microenvironment

Journal for ImmunoTherapy of Cancer(2022)10.1136/jitc-2021-003402

N/A

0.728DataRank · unranked

127 citations

Rose Al Abosy, Brian C. Miller, Kevin Bi, Qihong Zhao, Michael Quigley +13 more

Author response: The Human Cell Atlas

(2017)10.7554/elife.27041.011

Top 29%

0.700DataRank

Top 29%14 citations

Sarah A. Teichmann, Matthew E. Hurles, Ido Amit, Kerstin Lindblad‐Toh, Bernd Bodenmiller +60 more

Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets

Nature Communications(2020)10.1038/s41467-020-18320-z

N/A

0.695DataRank · unranked

22 citations

Deniz Yorukoglu, Lillian Zhang, Sarah K. Nyquist, Alex K. Shalek, Sharon L. R. Kardia +4 more

Spatially Resolved Single-Cell Assessment of Pancreatic Cancer Expression Subtypes Reveals Co-expressor Phenotypes and Extensive Intratumoral Heterogeneity

Cancer Research(2022)10.1158/0008-5472.can-22-3050

N/A

0.685DataRank · unranked

95 citations

Andressa Dias Costa, Jinming Zhang, Srivatsan Raghavan, Peter Winter, Kevin S. Kapner +34 more

A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.27.514070

N/A

0.677DataRank · unranked

16 citations

Dimitra Karagkouni, Nikolaos Kalavros, Johannes C. Melms, Sebastian Niezen, Toni Marie Delorey +63 more

Longitudinal transcriptomics define the stages of myeloid activation in the living human brain after intracerebral hemorrhage

Science Immunology(2021)10.1126/sciimmunol.abd6279

N/A

0.661DataRank · unranked

81 citations

Brittany A. Goods, Hannah E. Beatty, Arthur F. Steinschneider, Sofia Velazquez, Artem Osherov +90 more

Genomic and transcriptomic correlates of immunotherapy response within the tumor microenvironment of leptomeningeal metastases

Nature Communications(2021)10.1038/s41467-021-25860-5

N/A

0.637DataRank · unranked

69 citations

Christopher Alvarez‐Breckenridge, Samuel C. Markson, Albert E. Kim, Robert H. Klein, Naema Nayyar +24 more

Cyclin D3 drives inertial cell cycling in dark zone germinal center B cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.17.385716

N/A

0.584DataRank · unranked

11 citations

Jonatan Ersching, Tiago B. R. Castro, Marta Schips, Luka Mesin, Samuel J. Allon +8 more

Live cell tagging tracking and isolation for spatial transcriptomics using photoactivatable cell dyes

Nature Communications(2021)10.1038/s41467-021-25279-y

N/A

0.571DataRank · unranked

44 citations

Carly G.K. Ziegler, Constantine N. Tzouanas, Benjamin E. Mead, Alex M. Jaeger, Andrew W. Navia +10 more

CD4+ T cells re-wire granuloma cellularity and regulatory networks to promote immunomodulation following Mtb reinfection

Immunity(2024)10.1016/j.immuni.2024.08.002

N/A

0.564DataRank · unranked

42 citations

Sharie Keanne C. Ganchua, Sarah K. Nyquist, Pauline Maiello, Michael C. Chao, H. Jacob Borish +17 more

Measuring kinetics and metastatic propensity of CTCs by blood exchange between mice

Nature Communications(2021)10.1038/s41467-021-25917-5

N/A

0.561DataRank · unranked

41 citations

A. B. Miller, Lara Meier, Max A. Stockslager, Sheng Rong Ng, Emily King +16 more

Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli

Nature Biotechnology(2013)10.1038/nbt.2519

N/A

0.554DataRank · unranked

37 citations

Nicolas Chevrier, Roni Wilentzik, Thomas Eisenhaure, Raktima Raychowdhury, Yael Steuerman +6 more

Cancer tissue of origin constrains the growth and metabolism of metastases

Nature Metabolism(2024)10.1038/s42255-024-01105-9

N/A

0.533DataRank · unranked

34 citations

Yetiş Gültekin, Peter Winter, Sidney Y. Vermeulen, Konstantine Tchourine, Keene L. Abbott +22 more

A Single Human VH-gene Allows for a Broad-Spectrum Antibody Response Targeting Bacterial Lipopolysaccharides in the Blood

Cell Reports(2020)10.1016/j.celrep.2020.108065

N/A

0.510DataRank · unranked

29 citations

Ashraf S. Yousif, Larance Ronsard, Samuel W. Kazer, Alex Zhu, G. James Gatter +9 more

Active learning framework leveraging transcriptomics identifies modulators of disease phenotypes

Science(2025)10.1126/science.adi8577

N/A

0.490DataRank · unranked

22 citations

Charlotte Nesbitt, Samuel A. Miller, Daniel B. Burkhardt, Inna Lipchina, Doris Fu +18 more

Carbohydrate-Lectin Interactions Reprogram Dendritic Cells to Promote Type 1 Anti-Tumor Immunity

ACS Nano(2024)10.1021/acsnano.4c07360

N/A

0.457DataRank · unranked

20 citations

Adele Gabba, Robert Hincapie, Sachin Bhagchandani, Ankit Basak, Mohammad Murshid Alam +7 more

HIV infection drives interferon signaling within intestinal SARS-CoV-2 target cells

JCI Insight(2021)10.1172/jci.insight.148920

N/A

0.442DataRank · unranked

8 citations

Osaretin E. Asowata, Nicholas Herbert, Sarah K. Nyquist, Yenzekile Zungu, Alveera Singh +15 more

HIV specific CD8+ TRM-like cells in tonsils express exhaustive signatures in the absence of natural HIV control

Frontiers in Immunology(2022)10.3389/fimmu.2022.912038

N/A

0.406DataRank · unranked

14 citations

Sarah K. Nyquist, Osaretin E. Asowata, Samuel W. Kazer, Alveera Singh, Abigail Ngoepe +21 more

Distinct olfactory mucosal macrophage populations mediate neuronal maintenance and pathogen defense

Mucosal Immunology(2024)10.1016/j.mucimm.2024.07.009

N/A

0.406DataRank · unranked

14 citations

Ching‐Wen Chen, Marko Vukovic, Kristen A. Batich, Elliot Lin, Alex K. Shalek +4 more

Early cellular and molecular signatures correlate with severity of West Nile virus infection

iScience(2023)10.1016/j.isci.2023.108387

N/A

0.385DataRank · unranked

12 citations

Yujiao Zhao, Ira Fleming, Sameet Mehta, Xiaomei Wang, Brent Vander Wyk +17 more

Alterations of multiple alveolar macrophage states in chronic obstructive pulmonary disease

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.28.121541

N/A

0.385DataRank · unranked

12 citations

Wataru Fujii, Theodore S. Kapellos, Arik Horne, Benedikt Reiz, Erika Dudkin +41 more

Variants and vaccines impact nasal immunity over three waves of SARS-CoV-2

Nature Immunology(2025)10.1038/s41590-024-02052-z

N/A

0.373DataRank · unranked

11 citations

Vincent N. Miao, Anna H. Owings, Ying Tang, Joshua D. Bromley, Samuel W. Kazer +33 more

T helper cells modulate intestinal stem cell renewal and differentiation

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/217133

N/A

0.368DataRank · unranked

5 citations

Adam L. Haber, Semir Beyaz, Noga Rogel, Indresh Singh, Karthik Shekhar +26 more

A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients

Genome Biology(2025)10.1186/s13059-025-03499-5

N/A

0.363DataRank · unranked

7 citations

Dimitra Karagkouni, Nikolaos Kalavros, Johannes C. Melms, Sebastian Niezen, Toni Marie Delorey +70 more

Intrahepatic plasma cells, but not atypical memory B cells, associate with clinical phases of chronic hepatitis B

European Journal of Immunology(2024)10.1002/eji.202451085

N/A

0.334DataRank · unranked

7 citations

Martin Arreola Villanueva, Jasmin Joseph‐Chazan, Boris J. B. Beudeker, Robert J. de Knegt, Raymond Chung +10 more

Follicle-intrinsic and spatially distinct molecular programs drive follicle rupture and luteinization during ex vivo mammalian ovulation

Communications Biology(2024)10.1038/s42003-024-07074-9

N/A

0.333DataRank · unranked

7 citations

Jiyang Zhang, Daniela D. Russo, Ruixu Huang, Kristine Suritis, Riley S. Drake +7 more

Single-cell profiling of environmental enteropathy reveals signatures of epithelial remodeling and immune activation in severe disease

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.11.439202

N/A

0.330DataRank · unranked

8 citations

Thomas Wallach, Simutanyi Mwakamui, Travis K. Hughes, Nolawit Mulugeta, Victor Mudenda +19 more

Chronic metabolic stress drives developmental programs and loss of tissue functions in non-transformed liver that mirror tumor states and stratify survival

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.30.569407

N/A

0.330DataRank · unranked

8 citations

Marc S. Sherman, Jessica E.S. Shay, Adam J. Rubin, Benjamin E. Mead, Tyler T. Dao +24 more

NIAID workshop on T cell technologies

Nature Immunology(2023)10.1038/s41590-022-01377-x

N/A

0.312DataRank · unranked

7 citations

Chao Jiang, Mandy L. Ford, David M. Koelle, Alessandro Sette, Alex K. Shalek +2 more

AAV5 Delivery of CRISPR/Cas9 Mediates Genome Editing in the Lungs of Young Rhesus Monkeys

Human Gene Therapy(2024)10.1089/hum.2024.035

N/A

0.312DataRank · unranked

7 citations

Andrew W. Navia, Michelle L. Ramseier, Xuntao Zhou, Michele Martinez, Charles K. Lee +12 more

Cellular and transcriptional diversity over the course of human lactation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.13.468496

N/A

0.292DataRank · unranked

6 citations

Patricia Gao, Tessa K. J. Haining, Michael R. Retchin, Yarden Golan Maor, Riley S. Drake +8 more

High-throughput organoid screening enables engineering of intestinal epithelial composition

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.27.063727

N/A

0.292DataRank · unranked

6 citations

Kazuki Hattori, Lauren Levy, Marko Vukovic, Daphne Sze, Juan D. Matute +7 more

Voices in methods development

Nature Methods(2019)10.1038/s41592-019-0585-6

N/A

0.269DataRank · unranked

5 citations

Rosalind Mott Firenze, Clifford Brangwynne, Ibrahim I. Cissé, Oliver Fiehn, Petra Fromme +44 more

Congenital T-cell activation impairs transitional-to-follicular B-cell maturation in humans

Blood Advances(2024)10.1182/bloodadvances.2024013267

N/A

0.241DataRank · unranked

4 citations

Kirsty Hillier, Michelle L. Ramseier, Alice Bertocchi, Naoki Kaneko, Katherine Premo +16 more

A Spatial Multi-Modal Dissection of Host-Microbiome Interactions within the Colitis Tissue Microenvironment

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.04.583400

N/A

0.241DataRank · unranked

4 citations

Yunhao Bai, Yao Yu Yeo, Xiaowei Lu, Xavier Rovira‐Clavé, Han Chen +7 more

Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses

Cell(2015)10.1016/j.cell.2015.09.044

N/A

0.241DataRank · unranked

4 citations

Nathan Haseley, Douglas Brown, Cristina Penaranda, John J. Trombetta, Rahul Satija +8 more

Leukocyte dynamics after intracerebral hemorrhage in a living patient reveal rapid adaptations to tissue milieu

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.10.375675

N/A

0.241DataRank · unranked

4 citations

Michael H. Askenase, Erica Markarian, Hannah E. Beatty, Riley S. Drake, Ira Fleming +10 more

Epstein-Barr Virus Orchestrates Spatial Reorganization and Immunomodulation within the Classic Hodgkin Lymphoma Tumor Microenvironment

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.05.583586

N/A

0.211DataRank · unranked

3 citations

Huaying Qiu, Yunhao Bai, Bokai Zhu, Yuzhou Chang, Jason Yeung +31 more

Compressed phenotypic screens for complex multicellular models and high-content assays

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.23.525189

N/A

0.208DataRank · unranked

3 citations

Conner Kummerlowe, Nuo Liu, Walaa E. Kattan, Thomas W. Cheng, Jaime H. Cheah +11 more

Severe COVID-19 is associated with fungal colonization of the nasopharynx and potent induction of IL-17 responses in the nasal epithelium

medRxiv(2022)10.1101/2022.10.25.22281528

N/A

0.165DataRank · unranked

2 citations

Anna H. Owings, Vincent N. Miao, Andrew W. Navia, Ying Tang, Joshua D. Bromley +16 more

Glycan-costumed virus-like particles promote type 1 anti-tumor immunity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.18.575711

N/A

0.104DataRank · unranked

1 citations

Adele Gabba, Robert Hincapie, Sachin Bhagchandani, A.K. Basak, Mohammad Murshid Alam +6 more

Pro-inflammatory feedback loops define immune responses to pathogenic lentivirus infection

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.19.533358

N/A

0.104DataRank · unranked

1 citations

Joshua O. Marceau, Samuel W. Kazer, Ira Fleming, Vincent N. Miao, Jennyfer Galvez-Reyes +5 more

Autoimmune disease risk gene ANKRD55 promotes TH17 effector function through metabolic modulation

The Journal of Experimental Medicine(2025)10.1084/jem.20250185

N/A

0.104DataRank · unranked

1 citations

Lingjia Kong, Elizabeth A. Creasey, Sneha Rath, Lei Deng, Julián Ávila-Pacheco +11 more

Congenital T cell activation impairs transitional to follicular B cell maturation in humans

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.08.579495

N/A

0.104DataRank · unranked

1 citations

Kirsty Hillier, Michelle L. Ramseier, Alice Bertocchi, Naoki Kaneko, Katherine Premo +16 more

Expanding the HDAC druggable landscape beyond enzymatic activity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.07.519454

N/A

0.104DataRank · unranked

1 citations

Soon Gang Choi, Salvador Sierra, Tina O’Grady, Mario de la Fuente Revenga, Florent Laval +45 more

Preparation of Single-Cell RNA-Seq Libraries for Next Generation Sequencing v1

(2018)10.17504/protocols.io.pbhdij6

N/A

0DataRank · unranked

0 citations

David Gennert, Diana Lu, Rahul Satija, Alex K. Shalek, Prisca Liberali +2 more

A single-cell liver atlas of Plasmodium vivax infection

Cell Host & Microbe(2022)10.1016/j.chom.2022.03.034

N/A

0DataRank · unranked

98 citations

Nil Gural, Eliana Real, Marc H. Wadsworth, Vincent L. Butty, Sandra March +10 more

A human liver cell-based system modeling a clinical prognostic liver signature combined with single cell RNA-seq for discovery of novel liver disease therapeutics

Journal of Hepatology(2020)10.1016/s0168-8278(20)30611-5

N/A

0DataRank · unranked

0 citations

Simonetta Bandiera, Naoto Fujiwara, Shen Li, Hussein El Saghire, Xiaochen Sun +62 more

Screening for modulators of the cellular composition of gut epithelia via organoid models of intestinal stem cell differentiation

Nature Biomedical Engineering(2022)10.1038/s41551-022-00863-9

N/A

0DataRank · unranked

57 citations

Kazuki Hattori, Lauren Levy, Shinya Imada, Norihiro Goto, Marko Vukovic +11 more

Implementation of single-cell genomics as a translational tool in patients with metastatic melanoma.

Journal of Clinical Oncology(2016)10.1200/jco.2016.34.15_suppl.11503

N/A

0DataRank · unranked

0 citations

Itay Tirosh, Asaf Rotem, Parin Shah, Ken Dutton-Regester, Mohammad Fallahi +17 more

LGG-05. SINGLE CELL RNA SEQUENCING REVEALS MITOGENIC AND PROGENITOR GENE PROGRAMS IN BRAF-REARRANGED PILOCYTIC ASTROCYTOMAS

Neuro-Oncology(2019)10.1093/neuonc/noz036.148

N/A

0DataRank · unranked

0 citations

Guillaume Bergthold, Kristine Pelton, Sarah Becker, Robert Jones, Claire Sinai +31 more

Single-Cell Multiomics Reveals Clonal T-Cell Expansions and Exhaustion in Blastic Plasmacytoid Dendritic Cell Neoplasm

Frontiers in Immunology(2022)10.3389/fimmu.2022.809414

N/A

0DataRank · unranked

16 citations

Daniel Ssozi, Marina Ainciburu, Jonathan Good, Jenny Noel, Martin Arreola Villanueva +8 more

Identification and Tracking of Alloreactive T Cell Clones in Rhesus Macaques Through the RM-scTCR-Seq Platform

Frontiers in Immunology(2022)10.3389/fimmu.2021.804932

N/A

0DataRank · unranked

9 citations

Ryan A. Fleming, James J. Kaminski, Connor McGuckin, Xianliang Rui, Jennifer Lane +6 more

Identification and characterization of the T cell receptor (TCR) repertoire of the cynomolgus macaque (Macaca Fascicularis)

BMC Genomics(2022)10.1186/s12864-022-08867-0

N/A

0DataRank · unranked

9 citations

Sarah K. Nyquist, Shayla Boyce, Tasneem Jivanjee, Samira Ibrahim, Joshua D. Bromley +10 more

Comparative analysis of cell-cell communication at single-cell resolution

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.04.479209

N/A

0DataRank · unranked

16 citations

Alex K. Shalek, Susan Holmes, Catherine A. Blish, Aaron J. Wilk

Identification and characterization of the T cell receptor (TCR) repertoire of the Cynomolgus macaque ( Macaca Fascicularis )

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.30.486315

N/A

0DataRank · unranked

0 citations

Shayla Boyce, Sarah K. Nyquist, Tasneem Jivanjee, Samira Ibrahim, Joshua D. Bromley +10 more

Tobacco smoke exposure results in recruitment of inflammatory airspace monocytes and accelerated growth of Mycobacterium tuberculosis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.21.521304

N/A

0DataRank · unranked

0 citations

Constantine N. Tzouanas, Marc H. Wadsworth, Josalyn L Cho, Alice H. Linder, Abigail E. Schiff +5 more

Comparative analysis of cell–cell communication at single-cell resolution

Nature Biotechnology(2023)10.1038/s41587-023-01782-z

N/A

0DataRank · unranked

131 citations

Alex K. Shalek, Susan Holmes, Catherine A. Blish, Aaron J. Wilk

CD8+ lymphocytes are critical for early control of tuberculosis in macaques

The Journal of Experimental Medicine(2023)10.1084/jem.20230707

N/A

0DataRank · unranked

88 citations

Sarah K. Nyquist, Michael C. Chao, Pauline Maiello, Amy J. Myers, Forrest Hopkins +22 more

Single-cell RNA sequencing of liver fine-needle aspirates captures immune diversity in the blood and liver in chronic hepatitis B patients

Hepatology(2023)10.1097/hep.0000000000000438

N/A

0DataRank · unranked

49 citations

Sonu Subudhi, Arlin Keo, Juan Diego Sánchez Vásquez, Nádia Conceição‐Neto, Deeqa Mahamed +30 more

Anex vivoovulation system enables the discovery of novel ovulatory pathways and nonhormonal contraceptive candidates

Biology of Reproduction(2023)10.1093/biolre/ioad009

N/A

0DataRank · unranked

23 citations

Brittany A. Goods, Pawat Pattarawat, Yingzheng Wang, Tessa Haining, Qiang Zhang +5 more

Tobacco smoke exposure recruits inflammatory airspace monocytes that establish permissive lung niches for Mycobacterium tuberculosis

Science Translational Medicine(2023)10.1126/scitranslmed.adg3451

N/A

0DataRank · unranked

23 citations

Constantine N. Tzouanas, Marc H. Wadsworth, Christina Schofield, Alice H. Linder, Abigail E. Schiff +8 more

Natural history of Ebola virus disease in rhesus monkeys shows viral variant emergence dynamics and tissue-specific host responses

Cell Genomics(2023)10.1016/j.xgen.2023.100440

N/A

0DataRank · unranked

6 citations

Sergio Triana, Siddharth S. Raju, Tammy C. T. Lan, Kim A. Lagerborg, Melissa A. Rudy +27 more

Vitrification preserves follicular transcriptomic dynamics during ex vivo ovulation

Biology of Reproduction(2023)10.1093/biolre/ioad083

N/A

0DataRank · unranked

3 citations

Daniela D. Russo, Yingzheng Wang, Qiang Zhang, Mary B. Zelinski, Alex K. Shalek +3 more

An ex vivo ovulation system enables the discovery of novel ovulatory pathways and non-hormonal contraceptive candidates

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.7595353

N/A

0DataRank · unranked

1 citations

Brittany A. Goods, Pawat Pattarawat, Yingzheng Wang, Tessa Haining, Qiang Zhang +5 more

Protective intravenous BCG vaccination induces enhanced immune signaling in the airways

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.16.549208

N/A

0DataRank · unranked

20 citations

Edward B. Irvine, Jacob M. Rosenberg, Marc H. Wadsworth, Travis K. Hughes, Matt Sutton +12 more

Enhanced production of eicosanoids in plasma and activation of DNA damage pathways in PBMCs are correlated with the severity of ancestral COVID-19 infection

medRxiv(2023)10.1101/2023.09.14.23295549

N/A

0DataRank · unranked

1 citations

Anna H. Owings, Michelle Galeas‐Pena, Carly G.K. Ziegler, Tanya O. Robinson, T. Grant Wichman +11 more

Data from Spatially Resolved Single-Cell Assessment of Pancreatic Cancer Expression Subtypes Reveals Co-expressor Phenotypes and Extensive Intratumoral Heterogeneity

(2023)10.1158/0008-5472.c.6514341.v1

N/A

0DataRank · unranked

0 citations

Andressa Dias Costa, Jinming Zhang, Srivatsan Raghavan, Peter Winter, Kevin S. Kapner +34 more

Data from Spatially Resolved Single-Cell Assessment of Pancreatic Cancer Expression Subtypes Reveals Co-expressor Phenotypes and Extensive Intratumoral Heterogeneity

(2023)10.1158/0008-5472.c.6514341

N/A

0DataRank · unranked

0 citations

Andressa Dias Costa, Jinming Zhang, Srivatsan Raghavan, Peter Winter, Kevin S. Kapner +34 more

Early cellular and molecular signatures correlate with severity of West Nile Virus infection

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.14.540642

N/A

0DataRank · unranked

0 citations

Yujiao Zhao, Ira Fleming, Sameet Mehta, Xiaomei Wang, Brent Vander Wyk +17 more

Recovery of Paired T Cell Receptors from Single-cell Seq-Well Libraries

Research Square(2023)10.21203/rs.2.13685/v2

N/A

0DataRank · unranked

0 citations

Todd M. Gierahn, Brinda Monian, Duncan M. Morgan, Naveen K. Mehta, Bert Ruiter +4 more

Erratum: Deconstructing transcriptional heterogeneity in pluripotent stem cells

Nature(2015)10.1038/nature14150

N/A

0DataRank · unranked

0 citations

Patrick Cahan, Alex K. Shalek, Rahul Satija, A. Jay DaleyKeyser, Hu Li +12 more

Preparation of Single-Cell RNA-Seq Libraries for Next Generation Sequencing v1

(2018)10.17504/protocols.io.n6gdhbw

N/A

0DataRank · unranked

0 citations

David Gennert, Diana Lu, Rahul Satija, Alex K. Shalek, Prisca Liberali +2 more

LGG-13. RESOLVING TRANSCRIPTIONAL PROFILES IN BRAF-REARRANGED PILOCYTIC ASTROCYTOMA USING SINGLE CELL RNA SEQUENCING

Neuro-Oncology(2018)10.1093/neuonc/noy059.355

N/A

0DataRank · unranked

0 citations

Guillaume Bergthold, Kristine Pelton, Sarah Becker, Robert Jones, Zach Herbert +16 more

B-Cell Activation Gene Signature in Blood and Liver of Hepatitis B e Antigen–Positive Patients With Immune Active Chronic Hepatitis B

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae280

N/A

0DataRank · unranked

5 citations

Boris J. B. Beudeker, Zwier M. A. Groothuismink, Robert J. de Knegt, Raymond T. Chung, Jeroen Aerssens +8 more

Pro-inflammatory feedback loops define immune responses to pathogenic Lentivirus infection

Genome Medicine(2024)10.1186/s13073-024-01290-y

N/A

0DataRank · unranked

3 citations

Joshua O. Marceau, Samuel W. Kazer, Ira Fleming, Vincent N. Miao, Jennyfer Galvez-Reyes +6 more

An enhanced IL17 and muted type I interferon nasal epithelial cell state characterizes severe COVID-19 with fungal coinfection

Microbiology Spectrum(2024)10.1128/spectrum.03516-23

N/A

0DataRank · unranked

2 citations

Anna H. Owings, Michelle Galeas‐Pena, Samuel W. Kazer, Vincent N. Miao, Andrew W. Navia +19 more

Systematic deconstruction of myeloid cell signaling in tuberculosis granulomas reveals IFN-γ, TGF-β, and time are associated with conserved myeloid diversity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.24.595747

N/A

0DataRank · unranked

5 citations

Hannah P. Gideon, Travis K. Hughes, Cal Gunnarson, Pauline Maiello, Douaa Mugahid +13 more

LAT encodes T cell activation pathway balance

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.26.609683

N/A

0DataRank · unranked

2 citations

Tyler T. Dao, Amelia V. Schueppert, Aviv Regev, Alex K. Shalek, Adam J. Rubin

Scalable nonparametric clustering with unified marker gene selection for single-cell RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.11.579839

N/A

0DataRank · unranked

0 citations

Madeline Hughes, Michelle L. Ramseier, Andrew W. Navia, Alex K. Shalek, Nicolò Fusi +5 more

Immunometabolic defects of CD8+ T cells disrupt gut barrier integrity in people with HIV

Cell(2025)10.1016/j.cell.2025.08.024

N/A

0DataRank · unranked

12 citations

Leah Froehle, Alexandra N Pipkin, Heeva Baharlou, Alice H. Linder, Palak Shah +24 more

Hepatic adaptation to chronic metabolic stress primes tumorigenesis

Cell(2025)10.1016/j.cell.2025.11.031

N/A

0DataRank · unranked

7 citations

Jessica E.S. Shay, Marc S. Sherman, Adam J. Rubin, Benjamin E. Mead, Tyler T. Dao +29 more

Single-cell and spatiotemporal profile of ovulation in the mouse ovary

PLoS Biology(2025)10.1371/journal.pbio.3003193

N/A

0DataRank · unranked

7 citations

Caroline E. Kratka, Jeffrey Pea, Cai McCann, Jack Nelson, John Bryan +10 more

Single-cell and spatial profiling highlights TB-induced myofibroblasts as drivers of lung pathology

The Journal of Experimental Medicine(2025)10.1084/jem.20251067

N/A

0DataRank · unranked

3 citations

Nuo Liu, Marc H. Wadsworth, Mark John. Chambers, Thabo Mpotje, Osaretin E. Asowata +25 more

Host-intrinsic and host-extrinsic factors modulate immunity to Mtb infection, reinfection, and noncanonical vaccination routes

Cell Reports Medicine(2025)10.1016/j.xcrm.2025.102286

N/A

0DataRank · unranked

1 citations

Andrew Simonson, Alex K. Shalek, JoAnne L. Flynn, Joshua D. Bromley

Longitudinal transcriptomic analysis of SIV-infected rhesus macaques reveals peripheral immune dynamics throughout untreated SIV infection and long-term antiretroviral therapy

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.08.669172

N/A

0DataRank · unranked

1 citations

Micayla George, John D. Ventura, Emily J. Fray, Malika Aïd, Victoria E. Walker-Sperling +6 more

Single Cell and Spatial Transcriptomics Defines the Cellular Architecture of the Antimicrobial Response Network in Human Leprosy Granulomas

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.01.406819

N/A

0DataRank · unranked

8 citations

Travis K. Hughes, Rosane M. B. Teles, Priscila R. Andrade, Bruno Jorge de Andrade Silva, Olesya Plazyo +14 more

Immunological Fingerprints of Controllers Developing Neutralizing HIV-1 Antibodies

Cell Reports(2020)10.1016/j.celrep.2019.12.087

N/A

0DataRank · unranked

26 citations

Ce Gao, Hsiao Rong Chen, Zhengyu Ouyang, Dhohyung Kim, Kellie E. Kolb +5 more

Single-cell profiling of Ebola virus infection in vivo reveals viral and host transcriptional dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.12.148957

N/A

0DataRank · unranked

5 citations

Aaron E. Lin, James Logue, Travis K. Hughes, Nadine M. Khoury, Siddharth S. Raju +21 more

Multimodal profiling of lung granulomas reveals cellular correlates of tuberculosis control

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.24.352492

N/A

0DataRank · unranked

5 citations

Travis K. Hughes, Constantine N. Tzouanas, Marc H. Wadsworth, Ang Andy Tu, Todd M. Gierahn +37 more

GM-CSF differentiation of human monocytes stabilizes macrophage state via oxidative signaling

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.29.318352

N/A

0DataRank · unranked

2 citations

Cal Gunnarsson, Gregory H. Babunovic, Armel Nibasumba, Ngomu Akeem Akilimali, Marc H. Wadsworth +8 more

MR1-restricted MAIT cells from the human lung mucosal surface have distinct phenotypic, functional, and transcriptomic features that are preserved in HIV infection

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.19.389858

N/A

0DataRank · unranked

2 citations

Maphe Mthembu, Erin W. Meermeier, Sanjay M. Prakadan, Samuel W. Kazer, Thierry Bassett +13 more

Spatially-Resolved Live Cell Tagging and Isolation Using Protected Photoactivatable Cell Dyes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.28.966598

N/A

0DataRank · unranked

0 citations

Carly G.K. Ziegler, Constantine N. Tzouanas, Ben Mead, Alex M. Jaeger, Andrew W. Navia +5 more

Measuring kinetics and metastatic propensity of CTCs by blood exchange between mice

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.01.350918

N/A

0DataRank · unranked

0 citations

A. B. Miller, Lara Meier, Max A. Stockslager, Emily M. King, Sheng Rong Ng +11 more

Innate Lymphoid Cell Activation and Sustained Depletion in Blood and Tissue of Children Infected with HIV from Birth Despite Antiretroviral Therapy

Cell Reports(2020)10.1016/j.celrep.2020.108153

N/A

0DataRank · unranked

18 citations

Samuel W. Kazer, Julia Roider, Kami C. Krista, Jane Millar, Osaretin E. Asowata +13 more

High-fat diet-activated fatty acid oxidation mediates intestinal stemness and tumorigenicity

Cell Reports(2021)10.1016/j.celrep.2021.109212

N/A

0DataRank · unranked

203 citations

Amanda M. Hussey, Constantine N. Tzouanas, Shinya Imada, Yesenia Barrera Millan, Dorukhan Bahceci +8 more

Cyclin D3 drives inertial cell cycling in dark zone germinal center B cells

The Journal of Experimental Medicine(2020)10.1084/jem.20201699

N/A

0DataRank · unranked

64 citations

Jonatan Ersching, Tiago B. R. Castro, Marta Schips, Luka Mesin, Samuel J. Allon +8 more

Expression of Foxp3 by T follicular helper cells in end-stage germinal centers

Science(2021)10.1126/science.abe5146

N/A

0DataRank · unranked

132 citations

Wei Hu, Tiago B. R. Castro, Sigrid Solem, Alice Galante, Zeran Lin +8 more

Enteric Coronavirus Infection and Treatment Modeled With an Immunocompetent Human Intestine-On-A-Chip

Frontiers in Pharmacology(2021)10.3389/fphar.2021.718484

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0DataRank · unranked

85 citations

Seong‐Min Kim, Girija Goyal, Wuji Cao, Cicely W. Fadel, Arash Naziripour +18 more

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Journal of Allergy and Clinical Immunology(2020)10.1016/j.jaci.2020.02.035

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0DataRank · unranked

103 citations

Daniel F. Dwyer, José Ordovás-Montañés, Howard R. Katz, Erin I. Lewis, Marko Vukovic +8 more

Functional compensation precedes recovery of tissue mass following acute liver injury

Nature Communications(2020)10.1038/s41467-020-19558-3

N/A

0DataRank · unranked

108 citations

Kellie E. Kolb, Carolyn L. Winston, Jake Henderson, Benjamin Kruft, Ira Fleming +7 more

Second-Strand Synthesis-Based Massively Parallel scRNA-Seq Reveals Cellular States and Molecular Features of Human Inflammatory Skin Pathologies

Immunity(2020)10.1016/j.immuni.2020.09.015

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0DataRank · unranked

279 citations

Marc H. Wadsworth, Todd M. Gierahn, Tran Do, David I. Weiss, Priscila R. Andrade +10 more

Identification of a Master Regulator of Differentiation in Toxoplasma

Cell(2020)10.1016/j.cell.2019.12.013

N/A

0DataRank · unranked

284 citations

Dominic Schwarz, Marc H. Wadsworth, Jeroen P. J. Saeij, Alex K. Shalek, Sebastian Lourido +1 more

Single-cell immunophenotyping of the skin lesion erythema migrans identifies IgM memory B cells

JCI Insight(2021)10.1172/jci.insight.148035

N/A

0DataRank · unranked

39 citations

Hailong Meng, Khadir Raddassi, Ira Fleming, Kenneth B. Hoehn, Kenneth R. Dardick +7 more

Spatiotemporal single-cell profiling reveals that invasive and tissue-resident memory donor CD8 + T cells drive gastrointestinal acute graft-versus-host disease

Science Translational Medicine(2021)10.1126/scitranslmed.abc0227

N/A

0DataRank · unranked

63 citations

James J. Kaminski, E. Lake Potter, Scott N. Furlan, Alison Yu, Daniel J. Hunt +23 more

Single-Cell Analyses of Colon and Blood Reveal Distinct Immune Cell Signatures of Ulcerative Colitis and Crohn’s Disease

Gastroenterology(2020)10.1053/j.gastro.2020.04.074

N/A

0DataRank · unranked

355 citations

Sarah Wall, Peng Liu, José Ordovás-Montañés, Tamar Parmet, Marko Vukovic +43 more

Vitrification preserves murine ovarian follicular cell transcriptome in a 3D encapsulatedin vitrofollicle growth system

Biology of Reproduction(2021)10.1093/biolre/ioab185

N/A

0DataRank · unranked

11 citations

Riley S. Drake, Daniela D. Russo, Pawat Pattarawat, Qiang Zhang, Mary B. Zelinski +4 more

Prevention of tuberculosis in macaques after intravenous BCG immunization

Nature(2020)10.1038/s41586-019-1817-8

N/A

0DataRank · unranked

608 citations

Joseph J. Zeppa, Pauline Maiello, Joshua A. Hackney, Marc H. Wadsworth, Travis K. Hughes +18 more

Enteric coronavirus infection and treatment modeled with an immunocompetent human intestine-on-a-chip

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.03.446968

N/A

0DataRank · unranked

5 citations

Seong‐Min Kim, Girija Goyal, Wuji Cao, Cicely W. Fadel, Arash Naziripour +17 more

An N-of-1 Trial of Itacitinib for a Patient with Aplastic Anemia Associated with a Gain-of-Function Variant in STAT1

Research Square(2021)10.21203/rs.3.rs-139401/v1

N/A

0DataRank · unranked

1 citations

Travis Hughes, Joshua M. Peters, Caleb A. Lareau, Leif S. Ludwig, Lucas R. Massoth +8 more

HIV-specific CD8 + T-cells in tonsils express exhaustive T RM -like signatures

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.04.467061

N/A

0DataRank · unranked

0 citations

Sarah K. Nyquist, Osaretin E. Asowata, Samuel W. Kazer, Alveera Singh, Abigail Ngoepe +21 more

Vitrification preserves murine ovarian follicular cell transcriptome in a 3D encapsulated in vitro follicle growth system

Zenodo (CERN European Organization for Nuclear Research)(2021)10.5281/zenodo.7065432

N/A

0DataRank · unranked

0 citations

Daniela D. Russo, Pawat Pattarawat, Qiang Zhang, Mary B. Zelinski, Alex K. Shalek +3 more

Lymph nodes are innervated by a unique population of sensory neurons with immunomodulatory potential

Cell(2020)10.1016/j.cell.2020.11.028

N/A

0DataRank · unranked

216 citations

Carly G.K. Ziegler, John Austin, Najat Mannoun, Marko Vukovic, José Ordovás-Montañés +3 more

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