Nathan E. Lewis

Also affiliated with Foundation Center, University of California System, University of California San Diego, Novo Nordisk (United States), NexImmune (United States), La Jolla Bioengineering Institute, Carbohydrate Competence Center, Technical University of Denmark

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

2.5Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Whole-body gene expression atlas of an adult metazoan

Science Advances(2023)10.1126/sciadv.adg0506

Top 13%

1.7DataRank

Top 13%98 citations

Erick Armingol, Chau Huynh, Louis Gevirtzman, Nathan E. Lewis, Robert H. Waterston +2 more

Papers

Driven by 51 papers — median percentile 65. Top paper: “Whole-body gene expression atlas of an adult metazoan”.

Whole-body gene expression atlas of an adult metazoan

Science Advances(2023)10.1126/sciadv.adg0506

Top 13%

1.7DataRank

Top 13%98 citations

Erick Armingol, Chau Huynh, Louis Gevirtzman, Nathan E. Lewis, Robert H. Waterston +2 more

Deciphering cell–cell interactions and communication from gene expression

Nature Reviews Genetics(2020)10.1038/s41576-020-00292-x

N/A

1.1DataRank · unranked

1265 citations

Adam Officer, Olivier Harismendy, Nathan E. Lewis, Erick Armingol

MEMOTE for standardized genome-scale metabolic model testing

Nature Biotechnology(2020)10.1038/s41587-020-0446-y

N/A

0.950DataRank · unranked

562 citations

Moritz E. Beber, Brett G. Olivier, Frank T. Bergmann, Meriç Ataman, Parizad Babaei +64 more

Virus-Receptor Interactions of Glycosylated SARS-CoV-2 Spike and Human ACE2 Receptor

Cell Host & Microbe(2020)10.1016/j.chom.2020.08.004

N/A

0.922DataRank · unranked

465 citations

Jeremy L. Praissman, Oliver C. Grant, Yongfei Cai, Tianshu Xiao, Katelyn E. Rosenbalm +11 more

Non-protective immune imprint underlies failure of Staphylococcus aureus IsdB vaccine

Cell Host & Microbe(2022)10.1016/j.chom.2022.06.006

N/A

0.695DataRank · unranked

102 citations

J.R. Caldera, Irshad A. Hajam, Austin W.T. Chiang, Chih-Hsiung Tsai, Haining Li +9 more

Immune response to intravenous immunoglobulin in patients with Kawasaki disease and MIS-C

Journal of Clinical Investigation(2021)10.1172/jci147076

N/A

0.641DataRank · unranked

71 citations

Isaac Shamie, Jamie Casey Lee, Cameron J. Nowell, Weiqi Peng, Shiela Angulo +18 more

Dietary serine-microbiota interaction enhances chemotherapeutic toxicity without altering drug conversion

Nature Communications(2020)10.1038/s41467-020-16220-w

N/A

0.596DataRank · unranked

52 citations

James A. Saba, Cong-Hui Yao, Michael A. Hilzendeger, Anna Drangowska-Way, Chintan Joshi +8 more

Artificial intelligence in the analysis of glycosylation data

Biotechnology Advances(2022)10.1016/j.biotechadv.2022.108008

N/A

0.590DataRank · unranked

50 citations

Austin W.T. Chiang, Nathan E. Lewis, Haining Li

ZNF263 is a transcriptional regulator of heparin and heparan sulfate biosynthesis

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1920880117

N/A

0.564DataRank · unranked

42 citations

Philipp N. Spahn, Alejandro Gómez Toledo, Austin W. T. Chiang, Benjamin P. Kellman, Jing Li +6 more

A Chinese hamster transcription start site atlas that enables targeted editing of CHO cells

NAR Genomics and Bioinformatics(2021)10.1093/nargab/lqab061

Top 35%

0.553DataRank

Top 35%15 citations

Sascha H. Duttke, Karen Julie la Cour Karottki, Claudia Z. Han, Anders Holmgaard Hansen, Hooman Hefzi +10 more

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.17.238444

N/A

0.546DataRank · unranked

37 citations

Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Clarisse Marotz, Se Jin Song +31 more

Atlas-scale metabolic activities inferred from single-cell and spatial transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.09.653038

N/A

0.434DataRank · unranked

17 citations

James Ashcroft, Magda Marečková, Martin Prete, Valentina Lorenzi, Cecilia Mazzeo +9 more

Computational cell–cell interaction technologies drive mechanistic and biomarker discovery in the tumor microenvironment

Current Opinion in Biotechnology(2023)10.1016/j.copbio.2023.103048

N/A

0.385DataRank · unranked

12 citations

Clarence K. Mah, G Yeo, Nathan E. Lewis, Avery Pong

A 2-year calorie restriction intervention may reduce glycomic biological age biomarkers – a pilot study

npj Aging(2025)10.1038/s41514-025-00254-9

N/A

0.360DataRank · unranked

10 citations

Jayanta Das, Lovorka Đerek, Daniel W. Belsky, Melissa C. Orenduff, Kim M. Huffman +15 more

A predictive ensemble classifier for the gene expression diagnosis of ASD at ages 1 to 4 years

Molecular Psychiatry(2022)10.1038/s41380-022-01826-x

N/A

0.360DataRank · unranked

10 citations

Javad Zahiri, Vahid Gazestani, Linda Lopez, Yaqiong Xiao, Raphael Kim +11 more

Inferring secretory and metabolic pathway activity from omic data with secCellFie

Metabolic Engineering(2023)10.1016/j.ymben.2023.12.006

N/A

0.330DataRank · unranked

8 citations

Mojtaba Samoudi, Caressa M. Robinson, Chih-Chung Kuo, Linus Weiß, Km Shams Ud Doha +9 more

Vascular Proteome Responses Precede Organ Dysfunction in a Murine Model of Staphylococcus aureus Bacteremia

mSystems(2022)10.1128/msystems.00395-22

N/A

0.330DataRank · unranked

8 citations

Gregory J. Golden, Claire Morris, Chelsea D. Painter, Victor Nizet, Alexandre Rosa Campos +7 more

Glycoengineering of the hepatitis C virus E2 glycoprotein improves biochemical properties and enhances immunogenicity

npj Vaccines(2025)10.1038/s41541-025-01161-6

N/A

0.312DataRank · unranked

7 citations

K. Li, Austin W.T. Chiang, Michael P. Schwoerer, Saori Suzuki, Sanne Schoffelen +16 more

Simple and practical sialoglycan encoding system reveals vast diversity in nature and identifies a universal sialoglycan-recognizing probe derived from AB5 toxin B subunits

Glycobiology(2022)10.1093/glycob/cwac057

N/A

0.291DataRank · unranked

5 citations

Naazneen Khan, Zahra Khedri, Benjamin P. Kellman, Saurabh Srivastava, Andrea Verhagen +11 more

Whole-body gene expression atlas of an adult metazoan

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.06.515345

Top 57%

0.274DataRank

Top 57%4 citations

Erick Armingol, Chau Huynh, Louis Gevirtzman, Nathan E. Lewis, Robert H. Waterston +2 more

A Chinese hamster transcription start site atlas that enables targeted editing of CHO cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.09.334045

N/A

0.269DataRank · unranked

5 citations

Sascha H. Duttke, Karen Julie la Cour Karottki, Claudia Z. Han, Anders Holmgaard Hansen, Hooman Hefzi +10 more

SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx

mBio(2025)10.1128/mbio.04015-24

N/A

0.208DataRank · unranked

3 citations

Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Robert Cooper, Alhosna Benjdia +60 more

A reconstruction of the mammalian secretory pathway identifies mechanisms regulating antibody production

Cell Systems(2025)10.1016/j.cels.2025.101453

N/A

0.208DataRank · unranked

3 citations

Jasmine Tat, Pablo Di Giusto, Athanasios Antonakoudis, Isaac Shamie, Hratch Baghdassarian +11 more

Inferring secretory and metabolic pathway activity from omic data with secCellFie

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.04.539316

N/A

0.104DataRank · unranked

1 citations

Mojtaba Samoudi, Caressa M. Robinson, Chih-Chung Kuo, Linus Weiß, Km Shams Ud Doha +8 more

Enhanced Production of HCV E1E2 Subunit Vaccine Candidates via Protein-Protein Interaction Identification in Glycoengineered CHO cells

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.20.655202

N/A

0DataRank · unranked

0 citations

Frances Rocamora, Caressa M. Robinson, Seunghyeon Shin, Eric A. Toth, Thomas R. Fuerst +3 more

Coexistence versus collapse in transposon populations

Physical review. E(2025)10.1103/physreve.111.054414

N/A

0DataRank · unranked

0 citations

Nathan E. Lewis, Aria Yom

Engineering mammalian protein secretion: Toward the convergence of high-throughput biology and computational methods

Cell Systems(2025)10.1016/j.cels.2025.101424

N/A

0DataRank · unranked

0 citations

Nathan E. Lewis, Cleo Kontoravdi, Francesca Ceroni, Jacopo Gabrielli

Recent advances in culture medium design for enhanced production of monoclonal antibodies in CHO cells: A comparative study of machine learning and systems biology approaches

Biotechnology Advances(2024)10.1016/j.biotechadv.2024.108480

N/A

0DataRank · unranked

21 citations

Iman Shahidi Pour Savizi, Nathan E. Lewis, Seyed Abbas Shojaosadati, Hossein Kavoni

Increased Production of LIGHT by T Cells in Eosinophilic Esophagitis Promotes Differentiation of Esophageal Fibroblasts Toward an Inflammatory Phenotype

Gastroenterology(2020)10.1053/j.gastro.2020.07.035

N/A

0DataRank · unranked

49 citations

Austin W.T. Chiang, Richard C. Kurten, Ranjan Dohil, Howard Brickner, Lucas Dohil +6 more

A consensus-based and readable extension of Li near Co de for R eaction R ules (LiCoRR)

Beilstein Journal of Organic Chemistry(2020)10.3762/bjoc.16.215

N/A

0DataRank · unranked

19 citations

Yujie Zhang, Emma Logomasini, Eric Meinhardt, Karla P. Godinez‐Macias, Austin W.T. Chiang +15 more

Virus-Receptor Interactions of Glycosylated SARS-CoV-2 Spike and Human ACE2 Receptor

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.25.172403

N/A

0DataRank · unranked

48 citations

Jeremy L. Praissman, Oliver C. Grant, Yongfei Cai, Tianshu Xiao, Katelyn E. Rosenbalm +11 more

A consensus-based and readable extension of Li near Co de for R eaction R ules (LiCoRR)

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.31.126623

N/A

0DataRank · unranked

2 citations

Yujie Zhang, Emma Logomasini, Eric Meinhardt, Austin W.T. Chiang, James T. Sorrentino +13 more

Coordinate regulation of systemic and kidney tryptophan metabolism by the drug transporters OAT1 and OAT3

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100575

N/A

0DataRank · unranked

42 citations

Anne Richelle, Jahir M. Gutierrez, Patrick Zhang, Xinlian Zhang, Vibha Bhatnagar +3 more

A unique esophageal extracellular matrix proteome alters normal fibroblast function in severe eosinophilic esophagitis

Journal of Allergy and Clinical Immunology(2021)10.1016/j.jaci.2021.01.023

N/A

0DataRank · unranked

26 citations

Austin W.T. Chiang, Loan Duong, Chih‐Chung Kuo, Stephanie X. Dong, Ranjan Dohil +4 more

Endothelial Heparan Sulfate Mediates Hepatic Neutrophil Trafficking and Injury during Staphylococcus aureus Sepsis

mBio(2021)10.1128/mbio.01181-21

N/A

0DataRank · unranked

26 citations

Alejandro Gómez Toledo, Alex Márki, James T. Sorrentino, Claire Morris, Raquel Jewel Riley +12 more

The Human Milk Oligosaccharide 3’Sialyllactose Promotes Inflammation Resolution and Reduces Atherosclerosis Development in Mice

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.19.433472

N/A

0DataRank · unranked

0 citations

Nathanael J. Spann, Chloe Autran, Bastian Ramms, Austin W.T. Chiang, Kaare V. Grunddal +13 more

Simple and practical sialoglycan encoding system reveals vast diversity in nature and identifies a universal sialoglycan-recognizing probe derived from AB 5 toxin B subunits

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.28.446191

N/A

0DataRank · unranked

0 citations

Naazneen Khan, Zahra Khedri, Benjamin P. Kellman, Saurabh Srivastava, Andrea Verhagen +11 more

Variant STAT4 and Response to Ruxolitinib in an Autoinflammatory Syndrome

New England Journal of Medicine(2023)10.1056/nejmoa2202318

N/A

0DataRank · unranked

79 citations

Sarah A. Blackstone, Gwendolyn Clay, Rachael L. Philips, Brynja Matthiasardottir, Michele Nehrebecky +36 more

Glycosylation shapes the efficacy and safety of diverse protein, gene and cell therapies

Biotechnology Advances(2023)10.1016/j.biotechadv.2023.108206

N/A

0DataRank · unranked

51 citations

Heidi L. Reesink, Seunghyeon Shin, James V. Sorrentino, Mina Wu, Eric A. Toth +3 more

Mitigating biomass composition uncertainties in flux balance analysis using ensemble representations

Computational and Structural Biotechnology Journal(2023)10.1016/j.csbj.2023.07.025

N/A

0DataRank · unranked

10 citations

Dong‐Hyuk Choi, Yi Qing Lee, Lokanand Koduru, Nathan E. Lewis, Meiyappan Lakshmanan +2 more

Single-cell A/B testing for cell-cell communication

Cell Systems(2023)10.1016/j.cels.2023.05.006

N/A

0DataRank · unranked

2 citations

Nathan E. Lewis, Caitlin Aamodt

Eosinophilic esophagitis drives tissue fibroblast regenerative programs toward pathologic dysfunction

Journal of Allergy and Clinical Immunology(2024)10.1016/j.jaci.2024.11.028

N/A

0DataRank · unranked

7 citations

Edsel M. Abud, Kevin Okamoto, Paramita Dutta, Austin W.T. Chiang, Haining Li +13 more

The human milk oligosaccharide 3′sialyllactose reduces low-grade inflammation and atherosclerosis development in mice

JCI Insight(2024)10.1172/jci.insight.181329

N/A

0DataRank · unranked

16 citations

Nathanael J. Spann, Chloe Autran, Tae Gyu Oh, Kaare V. Grunddal, Joanna Coker +28 more

Mechanotransduction-induced interplay between phospholamban and yes-activated protein induces smooth muscle cell hypertrophy

Mucosal Immunology(2024)10.1016/j.mucimm.2024.02.007

N/A

0DataRank · unranked

5 citations

Loan Duong, Eugene Tkachenko, Austin W.T. Chiang, Kevin Okamoto, Ranjan Dohil +5 more

Unraveling productivity-enhancing genes in Chinese hamster ovary cells via CRISPR activation screening using recombinase-mediated cassette exchange system

Metabolic Engineering(2024)10.1016/j.ymben.2024.11.009

N/A

0DataRank · unranked

4 citations

Che Lin Kim, Su Hyun Kim, Karen Julie la Cour Karottki, Hooman Hefzi, Lise Marie Grav +5 more

LipidSIM: Inferring mechanistic lipid biosynthesis perturbations from lipidomics with a flexible, low-parameter, Markov modeling framework

Metabolic Engineering(2024)10.1016/j.ymben.2024.01.004

N/A

0DataRank · unranked

2 citations

Sue Murray, Yang Li, Richard Lee, Audrey Low, Shruti Sasaki +6 more

A 2-year calorie restriction intervention reduces glycomic biological age biomarkers

medRxiv(2024)10.1101/2024.12.04.24318451

N/A

0DataRank · unranked

1 citations

Jayanta Das, Lovorka Đerek, Daniel W. Belsky, Melissa C. Orenduff, Kim M. Huffman +15 more

Antithrombin-binding heparan sulfate is ubiquitously expressed in epithelial cells and suppresses pancreatic tumorigenesis

Journal of Clinical Investigation(2025)10.1172/jci184172

N/A

0DataRank · unranked

5 citations

Ryan J. Weiss, Jacob R. Tremblay, Benjamin P. Kellman, Joanna Coker, Leo Alexander Dworkin +31 more

Improving recombinant antibody production using FcBAR: An in situ approach to detect and amplify protein-protein interactions

Metabolic Engineering(2025)10.1016/j.ymben.2025.07.006

N/A

0DataRank · unranked

4 citations

Frances Rocamora, Mojtaba Samoudi, Caressa M. Robinson, Chih-Chung Kuo, Nuša Pristovšek +6 more

Enhanced Production of HCV E1E2 Subunit Vaccine Candidates via Protein‐Protein Interaction Identification in Glycoengineered CHO Cells

Biotechnology Journal(2025)10.1002/biot.70112

N/A

0DataRank · unranked

3 citations

Frances Rocamora, Caressa M. Robinson, Seunghyeon Shin, Svetlana Maurya, Eric A. Toth +3 more

Glycoengineering of the hepatitis C virus E2 glycoprotein leads to improved biochemical properties and enhanced immunogenicity

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.02.646860

N/A

0DataRank · unranked

0 citations

Kun Li, Austin W.T. Chiang, Michael P. Schwoerer, Sanne Schoffelen, Khadija Elkholy +15 more

Nathan E. Lewis

Indexed papers

Top data-sharing exemplar

Papers