Matan Hofree

Immunology and MicrobiologyBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

6.9Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Nature Medicine(2020)10.1038/s41591-020-0844-1

Top 4%

5.6DataRank

Top 4%819 citations

Caroline B. M. Porter, Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro +45 more

Papers

Driven by 40 papers — median percentile 42. Top paper: “A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors”.

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Nature Medicine(2020)10.1038/s41591-020-0844-1

Top 4%

5.6DataRank

Top 4%819 citations

Caroline B. M. Porter, Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro +45 more

A Distinct Transcriptional Program in Human CAR T Cells Bearing the 4-1BB Signaling Domain Revealed by scRNA-Seq

Molecular Therapy(2020)10.1016/j.ymthe.2020.07.023

N/A

3.3DataRank · unranked

111 citations

Rebecca C. Larson, Nemanja Despot Marjanovic, Kirk Gosik, Ana P. Castano, Selena J. Lorrey +17 more

Senescent cancer-associated fibroblasts in pancreatic adenocarcinoma restrict CD8+ T cell activation and limit responsiveness to immunotherapy in mice

Nature Communications(2024)10.1038/s41467-024-50441-7

N/A

1.4DataRank · unranked

80 citations

Rachel E. Kahn, Lutfi Hodali, Reba Condiotti, Yarden Engel, Ela Elyada +17 more

Multimodal single-cell and whole-genome sequencing of small, frozen clinical specimens

Nature Genetics(2023)10.1038/s41588-022-01268-9

Top 16%

1.3DataRank

Top 16%59 citations

Joy Linyue Fan, Johannes C. Melms, Amit Dipak Amin, Yohanna Georgis, Irving Barrera +20 more

Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/455451

N/A

1.1DataRank · unranked

19 citations

Moshe Biton, Keri M. Sullivan, Grace Burgin, Daniel B. Graham, Rebecca H. Herbst +24 more

Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis

Cell(2019)10.1016/j.cell.2019.06.029

N/A

1.1DataRank · unranked

1412 citations

Moshe Biton, Keri M. Sullivan, Grace Burgin, Daniel B. Graham, Rebecca H. Herbst +28 more

Massively parallel single-nucleus RNA-seq with DroNc-seq

Nature Methods(2017)10.1038/nmeth.4407

N/A

1.1DataRank · unranked

1179 citations

Anindita Basu, Tyler Burks, Karthik Shekhar, Matan Hofree, François Aguet +9 more

A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia

Cell(2019)10.1016/j.cell.2019.04.040

N/A

1.0DataRank · unranked

905 citations

Dariusz Przybylski, Monika S. Kowalczyk, Youmna Kfoury, Nicolas Severe, Karin Gustafsson +16 more

Spatially organized multicellular immune hubs in human colorectal cancer

Cell(2021)10.1016/j.cell.2021.08.003

N/A

1.0DataRank · unranked

787 citations

Matan Hofree, Siranush Sarkizova, Joshua D. Pirl, Vjola Jorgji, Alborz Bejnood +73 more

The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation

Nature(2017)10.1038/nature24029

N/A

0.966DataRank · unranked

625 citations

Samantha J. Riesenfeld, Patrick R. Burkett, Raja-Elie E. Abdulnour, Jackson Nyman, Danielle Dionne +18 more

Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.02.508492

N/A

0.946DataRank · unranked

16 citations

Simon Mages, Johanna Klughammer, Noa Moriel, Shinya Imada, Matan Hofree +22 more

Emergence of a High-Plasticity Cell State during Lung Cancer Evolution

Cancer Cell(2020)10.1016/j.ccell.2020.06.012

N/A

0.896DataRank · unranked

393 citations

Matan Hofree, Jason E. Chan, David A. Canner, Katherine Wu, Marianna Trakala +33 more

Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6

Cell(2017)10.1016/j.cell.2017.07.028

N/A

0.889DataRank · unranked

374 citations

Tuomas Tammela, Matan Hofree, Jinwook Choi, Nemanja Despot Marjanovic, Seungmin Han +9 more

Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps

Cell(2021)10.1016/j.cell.2021.11.031

N/A

0.871DataRank · unranked

332 citations

Cherie’ R. Scurrah, Eliot T. McKinley, Alan J. Simmons, Marisol A. Ramirez-Solano, Xiangzhu Zhu +48 more

Regenerative potential of prostate luminal cells revealed by single-cell analysis

Science(2020)10.1126/science.aay0267

N/A

0.859DataRank · unranked

306 citations

Matan Hofree, Danielle Choi, Eliot L. Linton, Mesruh Turkekul, Alborz Bejnood +16 more

Mouse fetal growth restriction through parental and fetal immune gene variation and intercellular communications cascade

Nature Communications(2022)10.1038/s41467-022-32171-w

N/A

0.813DataRank · unranked

23 citations

Orr Ashenberg, Jack Lee, Samantha J. Riesenfeld, Matan Hofree, Maria Aggelakopoulou +21 more

Erratum: The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation

Nature(2017)10.1038/nature24480

N/A

0.792DataRank · unranked

20 citations

Samantha J. Riesenfeld, Patrick R. Burkett, Raja-Elie E. Abdulnour, Jackson Nyman, Danielle Dionne +18 more

Rapid CLIP dissociation from MHC II promotes an unusual antigen presentation pathway in autoimmunity

Journal of Experimental Medicine(2018)10.1084/jem.20180300

N/A

0.489DataRank · unranked

25 citations

Orr Ashenberg, Jason Pyrdol, Adrienne M. Luoma, Matan Hofree, Elena Christian +10 more

Multicellular immune hubs and their organization in MMRd and MMRp colorectal cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.30.426796

N/A

0.297DataRank · unranked

4 citations

Matan Hofree, Jonathan Chen, Siranush Sarkizova, Joshua D. Pirl, Vjola Jorgji +71 more

Multicellular immune hubs and their organization in MMRd and MMRp colorectal cancer

The Journal of Immunology(2021)10.4049/jimmunol.206.supp.68.13

N/A

0.262DataRank · unranked

3 citations

Karin Pelka, Matan Hofree, Marios Giannakis, Genevieve M. Boland, Andrew J. Aguirre +5 more

Parental-fetal interplay of immune genes leads to intrauterine growth restriction

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.26.437292

N/A

0.126DataRank · unranked

1 citations

Orr Ashenberg, Jack Lee, Samantha J. Riesenfeld, Matan Hofree, Maria Aggelakopoulou +20 more

A cellular taxonomy of the bone marrow stroma in homeostasis and leukemia demonstrates cancer-crosstalk with stroma to impair normal tissue function

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/556845

N/A

0.104DataRank · unranked

1 citations

Monika S. Kowalczyk, Kfoury Youmna, Nicolas Severe, Mercier Francois, Lee Dongjun +13 more

Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics

eLife(2025)10.7554/elife.104815

N/A

0.104DataRank · unranked

1 citations

Simon Mages, Johanna Klughammer, Noa Moriel, Shinya Imada, Matan Hofree +22 more

Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

Cancer Epidemiology Biomarkers & Prevention(2025)10.1158/1055-9965.epi-25-1006

N/A

0DataRank · unranked

0 citations

Jules Cazaubiel, Chichun Tan, Brendan Reardon, Matan Hofree, Tomotaka Ugai +7 more

641 Spatially organized multicellular immune hubs in MMRd and MMRp colorectal cancer

Regular and Young Investigator Award Abstracts(2021)10.1136/jitc-2021-sitc2021.641

N/A

0DataRank · unranked

0 citations

Karin Pelka, Matan Hofree, Marios Giannakis, Prisca Liberali, Nir Hacohen +5 more

Table S1: Somatic Mutations from Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair–Deficient Colorectal Cancer

(2023)10.1158/2326-6066.22542492

N/A

0DataRank · unranked

0 citations

David Liu, Matan Hofree, Saud H. AlDubayan, Isaac Wakiro, Mei-Ju Su +17 more

Table S2: CRC risk and DNA repair genes evaluated for germline alterations from Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair–Deficient Colorectal Cancer

(2023)10.1158/2326-6066.22542489

Top 100%

0DataRank

Top 100%0 citations

David Liu, Matan Hofree, Saud H. AlDubayan, Isaac Wakiro, Mei-Ju Su +17 more

Supplementary Figures and Legends from Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair–Deficient Colorectal Cancer

(2023)10.1158/2326-6066.22542495

N/A

0DataRank · unranked

0 citations

David Liu, Matan Hofree, Saud H. AlDubayan, Isaac Wakiro, Mei-Ju Su +17 more

HTAPP_Dissociation of human primary colorectal cancer resection specimens into single cell suspension for single cell RNA-seq v2

(2021)10.17504/protocols.io.busfnwbn

N/A

0DataRank · unranked

0 citations

Matan Hofree, Tabea Moll, SusannahPhillips not provided, Danielle Dionne, Julia Waldman +18 more

Supplementary Figures and Legends from Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair–Deficient Colorectal Cancer

Figshare(2023)10.1158/2326-6066.22542495.v1

N/A

0DataRank · unranked

0 citations

David Liu, Matan Hofree, Saud H. AlDubayan, Isaac Wakiro, Mei-Ju Su +17 more

Table S2: CRC risk and DNA repair genes evaluated for germline alterations from Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair–Deficient Colorectal Cancer

Figshare(2023)10.1158/2326-6066.22542489.v1

Top 100%

0DataRank

Top 100%0 citations

David Liu, Matan Hofree, Saud H. AlDubayan, Isaac Wakiro, Mei-Ju Su +17 more

Data from Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair–Deficient Colorectal Cancer

(2023)10.1158/2326-6066.c.6549951

N/A

0DataRank · unranked

0 citations

David Liu, Matan Hofree, Saud H. AlDubayan, Isaac Wakiro, Mei-Ju Su +17 more

Author response: Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics

(2025)10.7554/elife.104815.3.sa2

N/A

0DataRank · unranked

0 citations

Simon Mages, Johanna Klughammer, Noa Moriel, Shinya Imada, Matan Hofree +26 more

HTAPP_Dissociation of human primary colorectal cancer resection specimens into single cell suspension for single cell RNA-seq v1

(2019)10.17504/protocols.io.batcieiw

N/A

0DataRank · unranked

0 citations

Matan Hofree, Tabea Moll, SusannahPhillips not provided, Danielle Dionne, Julia Waldman +18 more

DroNc-seq step-by-step v1

(2017)10.17504/protocols.io.md2c28e

N/A

0DataRank · unranked

0 citations

Naomi Habib, Prisca Liberali, Feng Zhang, Karthik Shekhar, Matan Hofree +10 more

Table S1: Somatic Mutations from Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair–Deficient Colorectal Cancer

Figshare(2023)10.1158/2326-6066.22542492.v1

N/A

0DataRank · unranked

0 citations

David Liu, Matan Hofree, Saud H. AlDubayan, Isaac Wakiro, Mei-Ju Su +17 more

Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss

UNC Libraries(2020)10.17615/seks-5275

N/A

0DataRank · unranked

0 citations

Scott M. Lippman, Ezra E.W. Cohen, Trey Ideker, Ann Marie Egloff, John Paul Shen +8 more

Multi-modal single-cell and whole-genome sequencing of minute, frozen specimens to propel clinical applications

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.13.480272

N/A

0DataRank · unranked

3 citations

Joy Linyue Fan, Johannes C. Melms, Amit Dipak Amin, Yohanna Georgis, Patricia Ho +15 more

Human lung cancer harbors spatially organized stem-immunity hubs associated with response to immunotherapy

Nature Immunology(2024)10.1038/s41590-024-01792-2

N/A

0DataRank · unranked

132 citations

Linda T. Nieman, Maxwell Spurrell, Vjola Jorgji, Liad Elmelech, Peter Richieri +32 more

Germline predisposition to oncogenic alkylating damage in colorectal cancer

medRxiv(2025)10.1101/2025.06.30.25330572

N/A

0DataRank · unranked

0 citations

Jules Cazaubiel, Chichun Tan, Brendan Reardon, Matan Hofree, Tomotaka Ugai +7 more

Matan Hofree

Indexed papers

Top data-sharing exemplar

Papers