Evan S. Snitkin

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 47 papers. Top paper: “Genetic Determinants of Trehalose Utilization Are Not Associated With Severe Clostridium difficile Infection Outcome”.

Genetic Determinants of Trehalose Utilization Are Not Associated With Severe Clostridium difficile Infection Outcome

Open Forum Infectious Diseases(2020)10.1093/ofid/ofz548

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0.930DataRank · unranked

19 citations

Krishna Rao, Vincent B. Young, Evan S. Snitkin, Katie Saund

Phenotypic and Genomic Diversification in Complex Carbohydrate-Degrading Human Gut Bacteria

mSystems(2022)10.1128/msystems.00947-21

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0.683DataRank · unranked

94 citations

Karthik Urs, Ryan Crawford, Ali Pirani, Todd Atherly, Roberto Jimenez +7 more

Longitudinal genomic surveillance of carriage and transmission of Clostridioides difficile in an intensive care unit

Nature Medicine(2023)10.1038/s41591-023-02549-4

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0.624DataRank · unranked

63 citations

Evan S. Snitkin, Michael Y. Lin, Teppei Shimasaki, Michael Schoeny, Christine Fukuda +12 more

Strain Variation in Clostridioides difficile Cytotoxicity Associated with Genomic Variation at Both Pathogenic and Nonpathogenic Loci

mSphere(2022)10.1128/msphere.00174-22

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0.373DataRank · unranked

11 citations

Ali Pirani, D. Borden Lacy, Philip C. Hanna, Evan S. Snitkin, Katie Saund

Association of patient clinical and gut microbiota features with vancomycin-resistant enterococci environmental contamination in nursing homes: a retrospective observational study

The Lancet Healthy Longevity(2023)10.1016/s2666-7568(23)00188-5

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0.292DataRank · unranked

6 citations

Betsy Foxman, Krishna Rao, Marco Cassone, Kristen E. Gibson, Lona Mody +2 more

Flagellar switch inverted repeat impacts flagellar invertibility and varies Clostridioides difficile RT027/MLST1 virulence

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.22.546185

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0.165DataRank · unranked

2 citations

Huaiying Lin, Ying Pigli, Jonathan K. Sia, Pola Kuhn, Evan S. Snitkin +7 more

Strain population structure varies widely across bacterial species and predicts strain colonization in unrelated individuals

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.17.343640

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0DataRank · unranked

10 citations

Alice Chen-Liaw, Varun Aggarwala, Nadeem O. Kaakoush, Thomas J. Borody, Hazel M. Mitchell +5 more

hogwash: Three Methods for Genome-Wide Association Studies in Bacteria

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.19.048421

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0DataRank · unranked

7 citations

Evan S. Snitkin, Katie Saund

Threshold-free genomic cluster detection to track transmission pathways in healthcare settings

medRxiv(2020)10.1101/2020.09.26.20200097

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0DataRank · unranked

2 citations

Rachel D Yelin, Karen Lolans, Robert A. Weinstein, Michael Y. Lin, Mary K. Hayden +2 more

Machine learning models to identify patient and microbial genetic factors associated with carbapenem-resistant Klebsiella pneumoniae infection

medRxiv(2020)10.1101/2020.07.06.20147306

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0DataRank · unranked

1 citations

Jennifer Han, Jenna Wiens, Ellie J. C. Goldstein, Ebbing Lautenbach, Evan S. Snitkin +1 more

A multisite genomic epidemiology study of Clostridioides difficile infections in the U.S. supports differential roles of healthcare versus community spread for two common strains

medRxiv(2020)10.1101/2020.11.28.20240192

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0DataRank · unranked

1 citations

Vincent B. Young, Eric G. Pamer, Tor Savidge, Mini Kamboj, Kevin W. Garey +2 more

Gut microbiota features on nursing home admission are associated with subsequent acquisition of antibiotic resistant organism colonization

medRxiv(2020)10.1101/2020.04.25.20078428

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0DataRank · unranked

0 citations

Marco Cassone, Kristen Gibson, Bonnie Lansing, Lona Mody, Evan S. Snitkin +2 more

Forest and Trees: Exploring Bacterial Virulence with Genome-wide Association Studies and Machine Learning

Trends in Microbiology(2021)10.1016/j.tim.2020.12.002

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0DataRank · unranked

76 citations

Evan S. Snitkin, Nathan B. Pincus, Alan R. Hauser, Jonathan P. Allen

Regional Spread of bla NDM-1-Containing Klebsiella pneumoniae ST147 in Post-Acute Care Facilities

Clinical Infectious Diseases(2021)10.1093/cid/ciab457

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0DataRank · unranked

68 citations

Ryan Crawford, Arianna Miles-Jay, Ali Pirani, William E. Trick, Robert A. Weinstein +4 more

Patient and Microbial Genomic Factors Associated with Carbapenem-Resistant Klebsiella pneumoniae Extraintestinal Colonization and Infection

mSystems(2021)10.1128/msystems.00177-21

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0DataRank · unranked

37 citations

Jennifer Han, Jenna Wiens, Ellie J. C. Goldstein, Ebbing Lautenbach, Evan S. Snitkin +1 more

Replication Dynamics for Six Gram-Negative Bacterial Species during Bloodstream Infection

mBio(2021)10.1128/mbio.01114-21

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0DataRank · unranked

29 citations

Aric N. Brown, Ali Pirani, Sara N. Smith, Amanda Photenhauer, Yuang Sun +4 more

cognac: rapid generation of concatenated gene alignments for phylogenetic inference from large, bacterial whole genome sequencing datasets

BMC Bioinformatics(2021)10.1186/s12859-021-03981-4

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0DataRank · unranked

19 citations

Evan S. Snitkin, Ryan Crawford

Fitness barriers to spread of colistin resistance overcome by first establishing niche in patients with enhanced colistin exposure

medRxiv(2021)10.1101/2021.06.11.21258758

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0DataRank · unranked

8 citations

Jennifer Han, Divya Choudhary, Stuart Castaneda, Ali Pirani, Kevin Alby +5 more

regentrans: a framework and R package for using genomics to study regional pathogen transmission

medRxiv(2021)10.1101/2021.07.25.21261097

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0DataRank · unranked

4 citations

Zena Lapp, Joyce Wang, Evan S. Snitkin, Sophie Hoffman

Strain variation in Clostridioides difficile toxin activity associated with genomic variation at both PaLoc and non-PaLoc loci

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.08.471880

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0DataRank · unranked

4 citations

Ali Pirani, D. Borden Lacy, Philip C. Hanna, Evan S. Snitkin, Katie Saund

Ferric Citrate Uptake is a Virulence Factor in Uropathogenic Escherichia coli

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.12.468464

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0DataRank · unranked

3 citations

Anna Sintsova, Sara N. Smith, Ali Pirani, Evan S. Snitkin, Harry L. T. Mobley +1 more

Regional spread of bla NDM-1 -containing Klebsiella pneumoniae Sequence Type 147 in post-acute care facilities

medRxiv(2021)10.1101/2021.03.16.21253722

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0DataRank · unranked

1 citations

Ryan Crawford, Arianna Miles-Jay, Ali Pirani, William E. Trick, Robert A. Weinstein +4 more

Ferric Citrate Uptake Is a Virulence Factor in Uropathogenic Escherichia coli

mBio(2022)10.1128/mbio.01035-22

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0DataRank · unranked

52 citations

Anna Sintsova, Sara N. Smith, Ali Pirani, Evan S. Snitkin, Harry L. T. Mobley +1 more

Threshold-free genomic cluster detection to track transmission pathways in health-care settings: a genomic epidemiology analysis

The Lancet Microbe(2022)10.1016/s2666-5247(22)00115-x

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0DataRank · unranked

21 citations

Rachel D Yelin, Karen Lolans, Ali Pirani, Robert A. Weinstein, Michael Y. Lin +3 more

Combined comparative genomics and clinical modeling reveals plasmid-encoded genes are independently associated with Klebsiella infection

Nature Communications(2022)10.1038/s41467-022-31990-1

N/A

0DataRank · unranked

32 citations

Emily Roberts, Lavinia V. Unverdorben, Sophia Mason, Alieysa Patel, Ryan Crawford +11 more

Genomic Epidemiology Suggests Community Origins of Healthcare-Associated USA300 Methicillin-Resistant Staphylococcus aureus

The Journal of Infectious Diseases(2022)10.1093/infdis/jiac056

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0DataRank · unranked

18 citations

Evan S. Snitkin, William E. Trick, Darjai Payne, Alla Aroutcheva, Robert A. Weinstein +2 more

regentrans: a framework and R package for using genomics to study regional pathogen transmission

Microbial Genomics(2022)10.1099/mgen.0.000747

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0DataRank · unranked

7 citations

Zena Lapp, Joyce Wang, Evan S. Snitkin, Sophie Hoffman

Comparative genomics reveals plasmid-encoded genes associated with Klebsiella infection in colonized patients

Research Square(2022)10.21203/rs.3.rs-1254643/v1

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0DataRank · unranked

0 citations

Emily Roberts, Lavinia V. Unverdorben, Sophia Mason, Alieysa Patel, Ryan Crawford +11 more

Virulence and genomic diversity among clinical isolates of ST1 (BI/NAP1/027) Clostridioides difficile

Cell Reports(2023)10.1016/j.celrep.2023.112861

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0DataRank · unranked

24 citations

Huaiying Lin, Marie-Maude Allen, Julian R. Garneau, Jonathan K. Sia, Rita C. Smith +15 more

Distinct Origins and Transmission Pathways of bla KPC Enterobacterales across Three U.S. States

Journal of Clinical Microbiology(2023)10.1128/jcm.00259-23

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0DataRank · unranked

5 citations

Rany Octaria, Sean M. O’Malley, Tu N. Nguyen, Hannah Wolford, Ryan Crawford +22 more

Virulence and genomic diversity among clinical isolates of ST1 (BI/NAP1/027) Clostridioides difficile

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.12.523823

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0DataRank · unranked

3 citations

Huaiying Lin, Marie-Maude Allen, Julian R. Garneau, Jonathan K. Sia, Rita C. Smith +15 more

Getting the Most Out of Your Genome-Wide Association Study Using Polygenic Risk Scores

Journal of Clinical Microbiology(2023)10.1128/jcm.00223-23

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0DataRank · unranked

0 citations

Evan S. Snitkin, Emily C. Maggioncalda

Adhesin Als4112 promotes Candida auris skin colonization through interactions with keratinocytes and extracellular matrix proteins

Nature Communications(2025)10.1038/s41467-025-60876-1

N/A

0DataRank · unranked

23 citations

Jingwen Lyu, Natalia A. Veniaminova, Robert Żarnowski, Eliciane Cevolani Mattos, Chad Johnson +20 more

Flagellar switch inverted repeats impact heterogeneity in flagellar gene expression and thus C. difficile RT027/MLST1 virulence

Cell Reports(2025)10.1016/j.celrep.2025.115830

N/A

0DataRank · unranked

5 citations

Huaiying Lin, Ying Pigli, Jonathan K. Sia, Pola Kuhn, Hannah Ruppel +8 more

Antibiotic-resistance plasmid amplified among MRSA cases in an urban jail and its connected communities

Nature Communications(2025)10.1038/s41467-025-67113-9

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0DataRank · unranked

2 citations

Hannah Steinberg, Emily Benedict, Sarah E. Sansom, Alla Aroutcheva, Kyle J. Gontjes +9 more

Incarceration is a key driver of racial disparities in community-associated methicillin-resistant Staphylococcus aureus infections in Cook County, IL

Annals of Epidemiology(2025)10.1016/j.annepidem.2025.07.027

N/A

0DataRank · unranked

4 citations

William E. Trick, Chad Zawitz, Robert A. Weinstein, Paul Won, Alla Aroutcheva +4 more

Tracking bla KPC Plasmid Dissemination within and between Enterobacterales across Michigan Over a Decade

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.18.670900

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0DataRank · unranked

1 citations

Dhatri Badri Narayanan, Ashley Miihlbach, Sara McNamara, Brenda Brennan, Arianna Miles-Jay +4 more

Regression-based modeling of pairwise genomic linkage data identifies risk factors for healthcare-associated infection transmission: Application to carbapenem-resistant Klebsiella pneumoniae transmission in a long-term care facility

medRxiv(2025)10.1101/2025.05.06.25327000

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0DataRank · unranked

0 citations

Timileyin Adediran, Mary K. Hayden, Evan S. Snitkin, Jon Zelner, Hannah Steinberg

Risk factors for household colonization by extended-spectrum cephalosporin-resistant enterobacterales (ESCrE) in Botswana

Antimicrobial Resistance and Infection Control(2025)10.1186/s13756-025-01581-y

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0DataRank · unranked

0 citations

Naledi Mannathoko, Mosepele Mosepele, Robert Gross, Leigh Cressman, Anne Jaskowiak‐Barr +13 more

Genomic Epidemiology of Clostridioides difficile

Infectious Disease Clinics of North America(2025)10.1016/j.idc.2025.07.013

N/A

0DataRank · unranked

0 citations

Evan S. Snitkin

MRSA Transmission in Intensive Care Units: Genomic Analysis of Patients, Their Environments, and Healthcare Workers

Clinical Infectious Diseases(2020)10.1093/cid/ciaa731

N/A

0DataRank · unranked

51 citations

Stefan J. Green, Koh Okamoto, Yoona Rhee, Mary K. Hayden, Michael Schoeny +3 more

Antibiotic-resistance plasmid amplified among MRSA cases in an urban jail and its connected communities

medRxiv(2025)10.1101/2025.10.23.25338646

N/A

0DataRank · unranked

0 citations

Hannah Steinberg, Emily Benedict, Sarah E. Sansom, Alla Aroutcheva, Kyle J. Gontjes +9 more

prewas: data pre-processing for more informative bacterial GWAS

Microbial Genomics(2020)10.1099/mgen.0.000368

N/A

0DataRank · unranked

28 citations

Zena Lapp, Stephanie N. Thiede, Ali Pirani, Evan S. Snitkin, Katie Saund

Hogwash: three methods for genome-wide association studies in bacteria

Microbial Genomics(2020)10.1099/mgen.0.000469

N/A

0DataRank · unranked

22 citations

Evan S. Snitkin, Katie Saund

Gut Microbiota Features on Nursing Home Admission Are Associated With Subsequent Acquisition of Antibiotic-resistant Organism Colonization

Clinical Infectious Diseases(2020)10.1093/cid/ciaa662

N/A

0DataRank · unranked

13 citations

Marco Cassone, Kristen Gibson, Bonnie Lansing, Lona Mody, Evan S. Snitkin +2 more

Application of Combined Genomic and Transfer Analyses to Identify Factors Mediating Regional Spread of Antibiotic-resistant Bacterial Lineages

Clinical Infectious Diseases(2020)10.1093/cid/ciaa364

N/A

0DataRank · unranked

12 citations

Betsy Foxman, Ali Pirani, Zena Lapp, Lona Mody, Evan S. Snitkin +1 more

Epidemiology of Vancomycin-Resistant Enterococcus faecium and Enterococcus faecalis Colonization in Nursing Facilities

Open Forum Infectious Diseases(2020)10.1093/ofid/ofz553

N/A

0DataRank · unranked

29 citations

Liam Hicks, Ihsan Ali, Elizabeth Salzman, Joyce Wang, Evan S. Snitkin +5 more