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regentrans: a framework and R package for using genomics to study regional pathogen transmission

medRxiv(2021)10.1101/2021.07.25.21261097Source: DataRank Database

regentrans: a framework and R package for using genomics to study regional pathogen transmission is a research paper published in medRxiv (2021). On theSindex it has a DataRank of 0. It has been cited 4 times.

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0DataRank · unranked

Scored on demand from live citation data

Open Access4 citations

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bioproject

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (3 grants)OA: greenTopics (15)IDs (PubMed)Annotations (1)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (4)

Zena Lapp ORCID,Joyce Wang ORCID,Evan S. Snitkin ORCID,Sophie Hoffman ORCID

Live enrichment

PubMed:21097893

National Science Foundation

Grant: 1256260

Graduate Research Fellowship Program (GRFP)

National Institutes of Health

Grant: 1R01AI148259-01

Regional genomic epidemiology to identify drivers of resistance, transmission and infection with carbapenem-resistant Klebsiella pneumoniae

Canadian Institutes of Health Research

Grant: unidentified

unidentified

greenLicense: cc-by

repositoryhttps://www.medrxiv.org/content/medrxiv/early/2021/11/17/2021.07.25.21261097.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/2021.07.25.21261097

https://doi.org/10.1101/2021.07.25.21261097

https://doi.org/10.1099/mgen.0.000747

https://pubmed.ncbi.nlm.nih.gov/35037617

Fields of Study

0301 basic medicine0303 health sciences03 medical and health sciences

Keywords

Cross InfectionWhole Genome SequencingGenomicsKlebsiella InfectionsKlebsiella pneumoniaeCarbapenemsDrug Resistance, Multiple, BacterialDatabases, GeneticMethodsHumansPhylogenySoftware

Sustainable Development Goals

SDG 3: 3. Good health