David Porubsky

Also affiliated with University of Washington, European Molecular Biology Laboratory, European Molecular Biology Laboratory

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

63.4Author DataRank

Indexed papers

27in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 27 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The complete sequence of a human genome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.26.445798

Top 2%

8.2DataRank

Top 2%182 citations

Sergey Koren, Arang Rhie, Allison A. Regier, Andrey V. Bzikadze, Alla Mikheenko +97 more

Papers

Driven by 60 papers — median percentile 84. Top paper: “Telomere-to-telomere assembly of a complete human X chromosome”.

Telomere-to-telomere assembly of a complete human X chromosome

Nature(2020)10.1038/s41586-020-2547-7

N/A

11.3DataRank · unranked

835 citations

Sergey Koren, Arang Rhie, Mitchell R. Vollger, Ariel Gershman, Andrey V. Bzikadze +48 more

The complete sequence of a human genome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.26.445798

Top 2%

8.2DataRank

Top 2%182 citations

Sergey Koren, Arang Rhie, Allison A. Regier, Andrey V. Bzikadze, Alla Mikheenko +97 more

The complete sequence of a human genome

Science(2022)10.1126/science.abj6987

Top 3%

7.0DataRank

Top 3%3361 citations

Sergey Koren, Arang Rhie, Allison A. Regier, Andrey V. Bzikadze, Alla Mikheenko +94 more

Haplotype-resolved diverse human genomes and integrated analysis of structural variation

Science(2021)10.1126/science.abf7117

Top 4%

5.7DataRank

Top 4%812 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +60 more

The structure, function and evolution of a complete human chromosome 8

Nature(2021)10.1038/s41586-021-03420-7

Top 4%

5.6DataRank

Top 4%388 citations

Mitchell R. Vollger, PingHsun Hsieh, Yafei Mao, Mikhail Liskovykh, Sergey Koren +27 more

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x

Top 4%

5.1DataRank

Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Pangenome graph construction from genome alignments with Minigraph-Cactus

Nature Biotechnology(2023)10.1038/s41587-023-01793-w

N/A

5.0DataRank · unranked

318 citations

Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao +94 more

Segmental duplications and their variation in a complete human genome

Science(2022)10.1126/science.abj6965

Top 5%

4.6DataRank

Top 5%380 citations

Xavi Guitart, Philip C. Dishuck, Ludovica Mercuri, William T. Harvey, Ariel Gershman +15 more

The complete sequence of a human Y chromosome

Nature(2023)10.1038/s41586-023-06457-y

Top 5%

4.1DataRank

Top 5%464 citations

Sergey Nurk, Mark J. P. Chaisson, Savannah J. Hoyt, Dylan J. Taylor, Nicolas Altemose +82 more

Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility

Science(2020)10.1126/science.abc6617

Top 6%

3.6DataRank

Top 6%201 citations

R. Alan Harris, Marina Haukness, Ian T. Fiddes, Shwetha C. Murali, Jason D. Fernandes +55 more

A Draft Human Pangenome Reference

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.09.499321

Top 8%

2.9DataRank

Top 8%74 citations

Mobin Asri, Daniel Doerr, Eoghan Harrington, Hickey, Glenn, Julian K. Lucas +47 more

The structure, function, and evolution of a complete human chromosome 8

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.08.285395

Top 10%

2.2DataRank

Top 10%54 citations

Mitchell R. Vollger, PingHsun Hsieh, Yafei Mao, Mikhail Liskovykh, Sergey Koren +24 more

A high-quality bonobo genome refines the analysis of hominid evolution

Nature(2021)10.1038/s41586-021-03519-x

Top 10%

2.1DataRank

Top 10%92 citations

Claudia Rita Catacchio, LaDeana Hillier, David Porubsky, Ruiyang Li, Arvis Sulovari +34 more

Increased mutation and gene conversion within human segmental duplications

Nature(2023)10.1038/s41586-023-05895-y

N/A

2.1DataRank · unranked

114 citations

Philip C. Dishuck, William T. Harvey, William S. DeWitt, Xavi Guitart, Michael E. Goldberg +108 more

Segmental duplications and their variation in a complete human genome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.26.445678

Top 14%

1.5DataRank

Top 14%46 citations

Xavi Guitart, Philip C. Dishuck, Ludovica Mercuri, William T. Harvey, Ariel Gershman +15 more

Structurally divergent and recurrently mutated regions of primate genomes

Cell(2024)10.1016/j.cell.2024.01.052

Top 15%

1.4DataRank

Top 15%72 citations

William T. Harvey, David Porubsky, Katherine M. Munson, Kendra Hoekzema, Alexandra P. Lewis +29 more

Complete sequencing of ape genomes

Nature(2025)10.1038/s41586-025-08816-3

Top 16%

1.3DataRank

Top 16%128 citations

Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar +123 more

Complex genetic variation in nearly complete human genomes

Nature(2025)10.1038/s41586-025-09140-6

Top 19%

1.1DataRank

Top 19%83 citations

Peter Ebert, Peter A. Audano, Mark Loftus, David Porubsky, Feyza Yilmaz +62 more

The complete sequence of a human Y chromosome

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.01.518724

Top 22%

0.934DataRank

Top 22%42 citations

Sergey Nurk, Savannah J. Hoyt, Dylan J. Taylor, Nicolas Altemose, Paul W. Hook +79 more

The variation and evolution of complete human centromeres

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.30.542849

Top 22%

0.923DataRank

Top 22%28 citations

Allison N. Rozanski, Fedor Ryabov, Tamara Potapova, В. А. Шепелев, Yafei Mao +12 more

Telomere-to-telomere assembly of diploid chromosomes with Verkko

Nature Biotechnology(2023)10.1038/s41587-023-01662-6

N/A

0.914DataRank · unranked

443 citations

Sergey Nurk, Brian P. Walenz, Glennis A. Logsdon, David Porubsky, Arang Rhie +4 more

Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads

Nature Biotechnology(2020)10.1038/s41587-020-0719-5

N/A

0.815DataRank · unranked

228 citations

Peter Ebert, Peter A. Audano, Mitchell R. Vollger, William T. Harvey, Pierre Marijon +16 more

Complex genetic variation in nearly complete human genomes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.24.614721

Top 27%

0.741DataRank

Top 27%27 citations

Peter Ebert, Peter A. Audano, Mark Loftus, David Porubsky, Feyza Yilmaz +62 more

Assembly of 43 human Y chromosomes reveals extensive complexity and variation

Nature(2023)10.1038/s41586-023-06425-6

N/A

0.721DataRank · unranked

121 citations

Peter Ebert, Mark Loftus, Feyza Yilmaz, Peter A. Audano, Glennis A. Logsdon +27 more

Automated assembly of high-quality diploid human reference genomes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.06.483034

Top 28%

0.719DataRank

Top 28%22 citations

Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Jonathan M. D. Wood +77 more

Recombination between heterologous human acrocentric chromosomes

Nature(2023)10.1038/s41586-023-05976-y

N/A

0.710DataRank · unranked

113 citations

Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren +106 more

Recurrent inversion toggling and great ape genome evolution

Nature Genetics(2020)10.1038/s41588-020-0646-x

N/A

0.675DataRank · unranked

89 citations

Ashley D. Sanders, Wolfram Höps, PingHsun Hsieh, Arvis Sulovari, Ruiyang Li +12 more

Structurally divergent and recurrently mutated regions of primate genomes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.07.531415

Top 32%

0.624DataRank

Top 32%14 citations

William T. Harvey, David Porubsky, Katherine M. Munson, Kendra Hoekzema, Alexandra P. Lewis +22 more

Gaps and complex structurally variant loci in phased genome assemblies

Genome Research(2023)10.1101/gr.277334.122

N/A

0.621DataRank · unranked

62 citations

Mitchell R. Vollger, William T. Harvey, Allison N. Rozanski, Peter Ebert, Hickey, Glenn +8 more

A complete diploid human genome benchmark for personalized genomics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.21.677443

Top 32%

0.611DataRank

Top 32%23 citations

Nathan Dwarshuis, Hyun Joo Ji, Arang Rhie, Hailey Loucks, Glennis A. Logsdon +60 more

Complete sequencing of ape genomes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.31.605654

Top 34%

0.582DataRank

Top 34%26 citations

Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar +123 more

Functional analysis of structural variants in single cells using Strand-seq

Nature Biotechnology(2022)10.1038/s41587-022-01551-4

N/A

0.553DataRank · unranked

39 citations

Karen Grimes, Kerstin K. Rauwolf, Peter‐Martin Bruch, Tobias Rausch, Patrick Hasenfeld +16 more

Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall

Genome Research(2023)10.1101/gr.278070.123

N/A

0.542DataRank · unranked

36 citations

Peter Ebert, Jana Ebler, Peter A. Audano, Katherine M. Munson, Kendra Hoekzema +6 more

A common flanking variant is associated with enhanced stability of the FGF14-SCA27B repeat locus

Nature Genetics(2024)10.1038/s41588-024-01808-5

N/A

0.533DataRank · unranked

34 citations

Giulia Gobbo, Madeline Couse, Egor Dolzhenko, Sathiji Nageshwaran, Warren Cheung +95 more

Assembly of 43 diverse human Y chromosomes reveals extensive complexity and variation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.01.518658

Top 37%

0.528DataRank

Top 37%9 citations

Peter Ebert, Mark Loftus, Feyza Yilmaz, Peter A. Audano, Glennis A. Logsdon +27 more

SVbyEye: a visual tool to characterize structural variation among whole-genome assemblies

Bioinformatics(2025)10.1093/bioinformatics/btaf332

N/A

0.524DataRank · unranked

32 citations

Xavi Guitart, DongAhn Yoo, Philip C. Dishuck, William T. Harvey, Evan E. Eichler +1 more

Independent expansion, selection, and hypervariability of the TBC1D3 gene family in humans

Genome Research(2024)10.1101/gr.279299.124

N/A

0.522DataRank · unranked

17 citations

David Porubsky, DongAhn Yoo, Max L. Dougherty, Philip C. Dishuck, Katherine M. Munson +7 more

SVbyEye: A visual tool to characterize structural variation among whole-genome assemblies

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.11.612418

N/A

0.464DataRank · unranked

21 citations

Xavi Guitart, DongAhn Yoo, Philip C. Dishuck, William T. Harvey, Evan E. Eichler +1 more

Phased nanopore assembly with Shasta and modular graph phasing with GFAse

Genome Research(2024)10.1101/gr.278268.123

N/A

0.434DataRank · unranked

17 citations

Melissa Meredith, Jean Monlong, Miten Jain, Hugh E. Olsen, Brandy McNulty +18 more

The structure, function, and evolution of a complete human chromosome 8

Research Square(2020)10.21203/rs.3.rs-72559/v1

Top 45%

0.404DataRank

Top 45%8 citations

Glennis A. Logsdon, Mitchell R. Vollger, PingHsun Hsieh, Yafei Mao, Mikhail Liskovykh +26 more

Phased nanopore assembly with Shasta and modular graph phasing with GFAse

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.21.529152

N/A

0.396DataRank · unranked

13 citations

Melissa Meredith, Jean Monlong, Miten Jain, Hugh E. Olsen, Brandy McNulty +18 more

Impact and characterization of serial structural variations across humans and great apes

Nature Communications(2024)10.1038/s41467-024-52027-9

N/A

0.385DataRank · unranked

12 citations

Tobias Rausch, Michael Jendrusch, Hufsah Ashraf, Peter A. Audano, Ola Austine +49 more

Haplotype-resolved inversion landscape reveals hotspots of mutational recurrence associated with genomic disorders

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.20.472354

N/A

0.373DataRank · unranked

11 citations

Wolfram Höps, Hufsah Ashraf, PingHsun Hsieh, Bernardo Rodríguez–Martín, Feyza Yilmaz +20 more

Whole-genome long-read sequencing downsampling and its effect on variant calling precision and recall

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.04.539448

N/A

0.373DataRank · unranked

11 citations

Peter Ebert, Jana Ebler, Peter A. Audano, Katherine M. Munson, Kendra Hoekzema +6 more

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100543

Top 50%

0.352DataRank

Top 50%6 citations

Stephanie Greer, Dmitri S. Pavlichin, Bo Zhou, Alexander E. Urban, Tsachy Weissman +94 more

Increased mutation rate and interlocus gene conversion within human segmental duplications

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.06.498021

N/A

0.330DataRank · unranked

8 citations

William S. DeWitt, Philip C. Dishuck, William T. Harvey, Xavi Guitart, Michael E. Goldberg +13 more

De novo assembly of 64 haplotype-resolved human genomes of diverse ancestry and integrated analysis of structural variation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.16.423102

Top 53%

0.322DataRank

Top 53%5 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +58 more

Using the linear references from the pangenome to discover missing autism variants

Nature Communications(2026)10.1038/s41467-026-68378-4

Top 65%

0.208DataRank

Top 65%3 citations

Jiadong Lin, Michelle D. Noyes, Young-Jun Kwon, Isaac Wong, Nidhi Koundinya +252 more

Population differences of chromosome 22q11.2 duplication structure predispose differentially to microdeletion and inversion

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.04.662981

N/A

0.165DataRank · unranked

2 citations

DongAhn Yoo, Philip C. Dishuck, Nidhi Koundinya, Erika Souche, William T. Harvey +15 more

Independent expansion, selection and hypervariability of the TBC1D3 gene family in humans

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.12.584650

N/A

0.165DataRank · unranked

2 citations

David Porubsky, DongAhn Yoo, Max L. Dougherty, Philip C. Dishuck, Katherine M. Munson +7 more

Structural and transduction patterns of human-specific polymorphic SVA insertions

Mobile DNA(2025)10.1186/s13100-025-00373-w

N/A

0.104DataRank · unranked

1 citations

Mark Loftus, Emily C. Golba, Haley Abel, Hufsah Ashraf, Peter A. Audano +64 more

NPEPPS segmental duplication drives position effect expression of TBC1D3 in the human brain

(2026)10.64898/2026.01.14.699559

N/A

0DataRank · unranked

0 citations

Jessie W Brunner, Luyao Ren, Hyeonsoo Jeong, DongAhn Yoo, David Porubsky +15 more

Inversion polymorphism in a complete human genome assembly

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.06.511148

N/A

0DataRank · unranked

5 citations

William T. Harvey, Allison N. Rozanski, Jana Ebler, Wolfram Höps, Hufsah Ashraf +7 more

GAVISUNK: genome assembly validation via inter-SUNK distances in Oxford Nanopore reads

Bioinformatics(2022)10.1093/bioinformatics/btac714

N/A

0DataRank · unranked

12 citations

Allison N. Rozanski, Glennis A. Logsdon, David Porubsky, Evan E. Eichler, Philip C. Dishuck

A 25-year odyssey of genomic technology advances and structural variant discovery

Cell(2024)10.1016/j.cell.2024.01.002

N/A

0DataRank · unranked

50 citations

Evan E. Eichler, David Porubsky

Phasing Diploid Genome Assembly Graphs with Single-Cell Strand Sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.15.580432

N/A

0DataRank · unranked

1 citations

Maryam Ghareghani, William T. Harvey, David Porubsky, Sergey Koren, Evan E. Eichler +3 more

Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution

Genome Research(2020)10.1101/gr.265322.120

N/A

0DataRank · unranked

25 citations

Ashley D. Sanders, Colin J. Shew, Arvis Sulovari, Yafei Mao, Marta Puig +13 more

Haplotype-aware single-cell multiomics uncovers functional effects of somatic structural variation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.11.468039

N/A

0DataRank · unranked

4 citations

Karen Grimes, Peter‐Martin Bruch, Tobias Rausch, Patrick Hasenfeld, Radhakrishnan Sabarinathan +13 more

Inversion polymorphism in a complete human genome assembly

Genome biology(2023)10.1186/s13059-023-02919-8

N/A

0DataRank · unranked

33 citations

William T. Harvey, Allison N. Rozanski, Jana Ebler, Wolfram Höps, Hufsah Ashraf +7 more

Structural Variation Evolution at the 15q11-q13 Disease-Associated Locus

International Journal of Molecular Sciences(2023)10.3390/ijms242115818

N/A

0DataRank · unranked

9 citations

Alberto L’Abbate, Donato Palmisano, Gerardina Chirico, David Porubsky, Claudia Rita Catacchio +5 more

David Porubsky

Indexed papers

Top data-sharing exemplar

Papers