🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

J. J. Emerson

University of California, Irvine

ORCID: 0000-0001-9474-0891
Agricultural and Biological SciencesBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
5.5Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Evolutionary Genomics of Structural Variation in Asian Rice ( Oryza sativa ) Domestication

Molecular Biology and Evolution(2020)10.1093/molbev/msaa185
Top 8%
2.7DataRank
Top 8%125 citations

Yi Liao, Tuomas Toivainen, Yuanda Lv, Xinmin Tian, J. J. Emerson +2 more

Papers

Driven by 18 papers — median percentile 91. Top paper: “Evolutionary Genomics of Structural Variation in Asian Rice ( Oryza sativa ) Domestication”.

Evolutionary Genomics of Structural Variation in Asian Rice ( Oryza sativa ) Domestication

Molecular Biology and Evolution(2020)10.1093/molbev/msaa185
Top 8%
2.7DataRank
Top 8%125 citations

Yi Liao, Tuomas Toivainen, Yuanda Lv, Xinmin Tian, J. J. Emerson +2 more

Evolution of genome structure in the Drosophila simulans species complex

Genome Research(2021)10.1101/gr.263442.120
Top 9%
2.3DataRank
Top 9%117 citations

Ching-Ho Chang, Danielle E. Khost, Jeffrey Vedanayagam, Jeffrey R. Adrion, Yi Liao +5 more

Behavioral and Genomic Sensory Adaptations Underlying the Pest Activity of Drosophila suzukii

Molecular Biology and Evolution(2021)10.1093/molbev/msab048
N/A
1.7DataRank · unranked
69 citations

Mahul Chakraborty, Antoine Abrieux, Kyle M. Lewald, Alice Gadau, Nicolas Svetec +7 more

Evolution of genome structure in the Drosophila simulans species complex

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.27.968743
Top 42%
0.455DataRank
Top 42%11 citations

Ching-Ho Chang, Danielle E. Khost, Jeffrey Vedanayagam, Jeffrey R. Adrion, Yi Liao +5 more

Genetic variation in recalcitrant repetitive regions of the Drosophila melanogaster genome

Genome Research(2025)10.1101/gr.280728.125
N/A
0.218DataRank · unranked
3 citations

Mahul Chakraborty, J. J. Emerson, Harsh Shukla

The 3D architecture of the pepper ( Capsicum annum ) genome and its relationship to function and evolution

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.10.470457
N/A
0DataRank · unranked
0 citations

Juntao Wang, Zhangsheng Zhu, Yuanlong Liu, Jinfeng Chen, Brandon S Gaut +7 more

The 3D architecture of the pepper genome and its relationship to function and evolution

Nature Communications(2022)10.1038/s41467-022-31112-x
N/A
0DataRank · unranked
92 citations

Juntao Wang, Zhangsheng Zhu, Yuanlong Liu, Jinfeng Chen, Brandon S Gaut +7 more

Sex-linked gene traffic underlies the acquisition of sexually dimorphic UV color vision in Heliconius butterflies

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2301411120
N/A
0DataRank · unranked
20 citations

Angelica Guadalupe Lara, Andrew Dang, Kyle J. McCulloch, Dylan Rainbow, David Carter +8 more

FREQ-Seq2: a method for precise high-throughput combinatorial quantification of allele frequencies

G3 Genes Genomes Genetics(2023)10.1093/g3journal/jkad162
N/A
0DataRank · unranked
0 citations

Tamás Lukácsovich, Rebecca L. Gaut, J. J. Emerson, Roy Zhao

Genetic variation in recalcitrant repetitive regions of the Drosophila melanogaster genome

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.11.598575
N/A
0DataRank · unranked
8 citations

Mahul Chakraborty, J. J. Emerson, Harsh Shukla

Functional innovation through new genes as a general evolutionary process

Nature Genetics(2025)10.1038/s41588-024-02059-0
N/A
0DataRank · unranked
44 citations

Jianhai Chen, Deanna Arsala, J. J. Emerson, Manyuan Long, Shengqian Xia

Accurate, Scalable Structural Variant Genotyping in Complex Genomes at Population Scales

Molecular Biology and Evolution(2025)10.1093/molbev/msaf180
N/A
0DataRank · unranked
4 citations

Penglong Wan, Chengjie Chen, Shuyuan Tang, Jiahao Chen, Liang Wang +7 more

Efficient population modification gene-drive rescue system in the malaria mosquito Anopheles stephensi

Nature Communications(2020)10.1038/s41467-020-19426-0
N/A
0DataRank · unranked
206 citations

Valentino M. Gantz, Nijole Jasinskiene, Hsu-Feng Lee, Kristy Hwang, Gerard Terradas +8 more

Benchmarking, detection, and genotyping of structural variants in a population of whole-genome assemblies using the SVGAP pipeline

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.07.637096
N/A
0DataRank · unranked
0 citations

Penglong Wan, Chengjie Chen, Shuyuan Tang, Jiahao Chen, Liang Wang +7 more

Efficient population modification gene-drive rescue system in the malaria mosquito Anopheles stephensi

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.02.233056
N/A
0DataRank · unranked
6 citations

Valentino M. Gantz, Nijole Jasinskiene, Hsu-Feng Lee, Kristy Hwang, Emily A. Bulger +8 more

Behavioral and genomic sensory adaptations underlying the pest activity of Drosophila suzukii

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.15.341594
N/A
0DataRank · unranked
1 citations

Mahul Chakraborty, Antoine Abrieux, Kyle M. Lewald, Alice Gadau, Nicolas Svetec +7 more

Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly

BMC Biology(2021)10.1186/s12915-021-00963-z
N/A
0DataRank · unranked
126 citations

Arunachalam Ramaiah, Adriana Adolfi, Paige Halas, Bhagyashree Kaduskar, Luna Thanh Ngo +9 more

Topologically associating domains and their role in the evolution of genome structure and function in Drosophila

Genome Research(2021)10.1101/gr.266130.120
N/A
0DataRank · unranked
77 citations

Xinwen Zhang, Mahul Chakraborty, J. J. Emerson, Yi Liao