Evolutionary Genomics of Structural Variation in Asian Rice ( Oryza sativa ) Domestication is a dataset published in Molecular Biology and Evolution (2020). On theSindex it has a DataRank of 2.7, placing it in the top 8% of the data-sharing corpus. It has been cited 125 times, with 100 citing works in its 1-hop citation network. Its calibrated FAIR score is 63/100.
Ranks in the top 8% for downstream scientific impact
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“https://zenodo.org/deposit/3758509”
The identifier is a web URL (Zenodo deposit page) without a DOI or other PID scheme string.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The gene and TE annotations of the reference genome and raw SV calls are available at https://zenodo.org/deposit/3758509 .”
Zenodo is a named data repository listed in re3data/FAIRsharing.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The gene and TE annotations of the reference genome and raw SV calls are available at https://zenodo.org/deposit/3758509 .”
The dataset identifier appears only in the body text (Data Availability section), not in the reference list.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The gene and TE annotations of the reference genome and raw SV calls are available at https://zenodo.org/deposit/3758509 .”
The statement points to a repository record (Zenodo) with a persistent link (Colavizza category 3). [majority verdict 'yes' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The gene and TE annotations of the reference genome and raw SV calls are available at https://zenodo.org/deposit/3758509 .”
The dataset content is described only in running prose ('gene and TE annotations of the reference genome and raw SV calls') with no itemised inventory, section, or table. [majority verdict 'partial' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The gene and TE annotations of the reference genome and raw SV calls are available at https://zenodo.org/deposit/3758509 .”
The text provides a direct URL to a public repository with no stated precondition. [majority verdict 'yes' (3/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
The paper does not explicitly label the access level of the data; it only states that the data are 'available' at a URL. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (2/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not sensitive or human-subject; no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No sentence in the paper states when the data become available or how long they persist.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“vcfs”— not found in the paper; verdict downgraded
The paper mentions 'unfiltered vcfs' in the data availability statement; VCF is an open, community-standard format. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (2/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard (e.g., MIAME, MIxS, BIDS) is named for the released data. [majority verdict 'no' (3/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
No identifier (accession, DOI, RRID, etc.) for an external resource appears in the text; external resources are cited only by bare reference.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No licence or terms document is named for the data; the CC BY-NC licence applies only to the article.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is stated for the data snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“The LASTZ Pipeline for SV detection is available at https://github.com/yiliao1022/lastz_sv_pipeline .”
A machine-resolvable code repository URL (GitHub) is given for the study's own code.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“National Science Foundation Grant Nos 1741627 and 1655808”
Award/grant numbers are provided for the funding sources.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Filtered short reads were then mapped to the reference genome japonica Nipponbare (Zhang et al. 2018) using BWA-MEM (Li and Durbin 2010).”— not found in the paper; verdict downgraded
The text names specific tools and software (BWA-MEM, SAMtools, GATK, DELLY, LUMPY) used to produce the data. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, data dictionary, codebook) is named as accompanying the data, and no variable-definition table exists inside the article. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.725
From this paper's citation signal
Citation Network Contribution
2.0
From 75 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 100 citers.
National Science Foundation
Grant: 1741627
RESEARCH-PGR: Phenotypic and Genomic Diversity of North American Vitis
National Science Foundation
Grant: 1655808
National Institutes of Health
Grant: R01GM123303-1
China Scholarship Council
Grant: 201808360265
National Natural Science Foundation of China
Grant: 31901222
Genomics High-Throughput Facility Shared Resource of the Cancer Center Support
Grant: CA62203
NIH
Grant: 1S10RR025496-01
High Throughput DNA Sequencer
NIH
Grant: 1S10OD010794-01
PacBio RS Single Molecule, Real-Time (SMRT) DNA Sequencer
NIH
Grant: 1S10OD021718-01
High-Throughput DNA Sequencer
NIH HHS
Grant: S10 OD010794
NIGMS NIH HHS
Grant: R01 GM123303
NIH HHS
Grant: S10 OD021718
NCI NIH HHS
Grant: P30 CA062203
NCRR NIH HHS
Grant: S10 RR025496
National Institutes of Health
Grant: 5R01GM123303-02
Structural variation population size and the evolution of genome complexity
University of California
FWCI
17.62
Citation Percentile
1.0%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals