Christina Boucher

Computer ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

4.8Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing

Nucleic Acids Research(2022)10.1093/nar/gkac1047

Top 7%

3.4DataRank

Top 7%206 citations

Enrique Doster, Hannah Worley, Lee J. Pinnell, Jonathan E. Bravo, Peter Ferm +6 more

Papers

Driven by 45 papers — median percentile 55. Top paper: “MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing”.

MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing

Nucleic Acids Research(2022)10.1093/nar/gkac1047

Top 7%

3.4DataRank

Top 7%206 citations

Enrique Doster, Hannah Worley, Lee J. Pinnell, Jonathan E. Bravo, Peter Ferm +6 more

Portable nanopore analytics: are we there yet?

Bioinformatics(2020)10.1093/bioinformatics/btaa237

N/A

1.1DataRank · unranked

27 citations

Franco Milicchio, Kaden King, Grace Benson, Christina Boucher, Mattia Prosperi +1 more

A comparative study of antibiotic resistance patterns in Mycobacterium tuberculosis

Scientific Reports(2025)10.1038/s41598-025-89087-w

Top 28%

0.703DataRank

Top 28%22 citations

Conrad Testagrose, Mattia Prosperi, Christina Boucher, Mohammadali Serajian

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2007295117

N/A

0.665DataRank · unranked

83 citations

Sergei L. Kosakovsky Pond, Simone Marini, Brittany Rife Magalis, Anne–Mieke Vandamme, Simon Dellicour +31 more

The K-mer antibiotic resistance gene variant analyzer (KARGVA)

Frontiers in Microbiology(2023)10.3389/fmicb.2023.1060891

Top 45%

0.413DataRank

Top 45%10 citations

Christina Boucher, Noelle Noyes, Mattia Prosperi, Simone Marini

Using the linear references from the pangenome to discover missing autism variants

Nature Communications(2026)10.1038/s41467-026-68378-4

Top 65%

0.208DataRank

Top 65%3 citations

Jiadong Lin, Michelle D. Noyes, Young-Jun Kwon, Isaac Wong, Nidhi Koundinya +252 more

Re 2 Pair: Increasing the Scalability of RePair by Decreasing Memory Usage

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.11.603142

N/A

0.145DataRank · unranked

1 citations

Rahul Varki, Marco Antônio Oliva, Christina Boucher, J.H. Kim

The K -mer Antibiotic Resistance Gene Variant Analyzer (KARGVA)

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.12.503773

Top 78%

0.104DataRank

Top 78%1 citations

Christina Boucher, Noelle Noyes, Mattia Prosperi, Simone Marini

Reducing skin microbiome exposure impacts through swine farm biosecurity

GigaScience(2025)10.1093/gigascience/giaf062

N/A

0.104DataRank · unranked

1 citations

Tara N. Gaire, Peter Ferm, Carissa Odland, Scott Dee, Joel Nerem +5 more

devider: long-read reconstruction of many diverse haplotypes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.05.621838

N/A

0.104DataRank · unranked

1 citations

Christina Boucher, Yun William Yu, Noelle Noyes, Alexandra P. Lewis, Jim Shaw

Towards routine employment of computational tools for antimicrobial resistance determination via high-throughput sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.03.467126

N/A

0DataRank · unranked

1 citations

Rodrígo Mora, Christina Boucher, Noelle Noyes, Mattia Prosperi, Simone Marini

Development of a Prediction Model for Antibiotic-Resistant Urinary Tract Infections Using Integrated Electronic Health Records from Multiple Clinics in North-Central Florida

Infectious Diseases and Therapy(2022)10.1007/s40121-022-00677-x

N/A

0DataRank · unranked

30 citations

Inyoung Jun, Jiang Bian, Christina Boucher, Kartikeya Cherabuddi, J. Glenn Morris +2 more

Assessing putative bias in prediction of anti-microbial resistance from real-world genotyping data under explicit causal assumptions

Artificial Intelligence in Medicine(2022)10.1016/j.artmed.2022.102326

N/A

0DataRank · unranked

9 citations

Christina Boucher, Jiang Bian, Simone Marini, Mattia Prosperi

AMR-meta: a k-mer and metafeature approach to classify antimicrobial resistance from high-throughput short-read metagenomics data

GigaScience(2022)10.1093/gigascience/giac029

N/A

0DataRank · unranked

18 citations

Marco Antônio Oliva, Ilya B. Slizovskiy, Rishabh A Das, Noelle Noyes, Tamer Kahveci +3 more

KARGAMobile: Android app for portable, real-time, easily interpretable analysis of antibiotic resistance genes via nanopore sequencing

Frontiers in Bioengineering and Biotechnology(2022)10.3389/fbioe.2022.1016408

N/A

0DataRank · unranked

7 citations

Simone Marini, Christina Boucher, Jaimé Ruiz, Mattia Prosperi, Alexander Barquero

CSTs for Terabyte-Sized Data

PubMed(2022)10.1109/dcc52660.2022.00017

N/A

0DataRank · unranked

4 citations

Davide Cenzato, Massimiliano Rossi, Zsuzsanna Lipták, Travis Gagie, Christina Boucher +1 more

μ- PBWT: a lightweight r-indexing of the PBWT for storing and querying UK Biobank data

Bioinformatics(2023)10.1093/bioinformatics/btad552

N/A

0DataRank · unranked

4 citations

Massimiliano Rossi, Simone Rubinacci, Travis Gagie, Dominik Köppl, Christina Boucher +2 more

Recursive Prefix-Free Parsing for Building Big BWTs

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.18.524557

N/A

0DataRank · unranked

2 citations

Travis Gagie, Christina Boucher, Marco Antônio Oliva

Acceleration of FM-index Queries Through Prefix-free Parsing

arXiv (Cornell University)(2023)10.48550/arxiv.2305.05893

N/A

0DataRank · unranked

0 citations

Marco Antônio Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, Travis Gagie +1 more

Data Structures for SMEM-Finding in the PBWT

Lecture notes in computer science(2023)10.1007/978-3-031-43980-3_8

N/A

0DataRank · unranked

0 citations

Christina Boucher, Davide Cozzi, Travis Gagie, Dominik Köppl, Massimiliano Rossi +1 more

Acceleration of FM-index Queries Through Prefix-free Parsing.

(2023)10.4230/lipics.wabi.2023.13

N/A

0DataRank · unranked

0 citations

Marco Antônio Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, Travis Gagie +1 more

Scalable de novo classification of antibiotic resistance of Mycobacterium tuberculosis

Bioinformatics(2024)10.1093/bioinformatics/btae243

N/A

0DataRank · unranked

17 citations

Simone Marini, Jarno Alanko, Noelle Noyes, Mattia Prosperi, Christina Boucher +1 more

r-indexing the eBWT

Information and Computation(2024)10.1016/j.ic.2024.105155

N/A

0DataRank · unranked

12 citations

Davide Cenzato, Zsuzsanna Lipták, Massimiliano Rossi, Marinella Sciortino, Christina Boucher

Building a pangenome alignment index via recursive prefix-free parsing

iScience(2024)10.1016/j.isci.2024.110933

N/A

0DataRank · unranked

5 citations

Marco Antônio Oliva, Travis Gagie, Christina Boucher, Eddie Ferro

ONeSAMP 3.0: estimation of effective population size via single nucleotide polymorphism data from one population

G3 Genes Genomes Genetics(2024)10.1093/g3journal/jkae153

N/A

0DataRank · unranked

7 citations

Rebecca G. Cheek, Suhashi Nihara De Silva, Kingshuk Mukherjee, Isha Yooseph, Marco Antônio Oliva +5 more

Pfp-fm: an accelerated FM-index

Algorithms for Molecular Biology(2024)10.1186/s13015-024-00260-8

N/A

0DataRank · unranked

6 citations

Marco Antônio Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, Travis Gagie +1 more

Factors impacting target-enriched long-read sequencing of resistomes and mobilomes

Genome Research(2024)10.1101/gr.279226.124

N/A

0DataRank · unranked

6 citations

Nathalie Bonin, Jonathan E. Bravo, Peter Ferm, Jacob Singer, Christina Boucher +2 more

OCTOPUS: Disk-based, Multiplatform, Mobile-friendly Metagenomics Classifier

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.15.585215

N/A

0DataRank · unranked

4 citations

Alexander Barquero, Anisha Ashok Wadhwani, Jiang Bian, Jaime Ruiz, Christina Boucher +2 more

An Average-Case Efficient Two-Stage Algorithm for Enumerating All Longest Common Substrings of Minimum Length $k$ Between Genome Pairs

PubMed(2024)10.1109/ichi61247.2024.00020

N/A

0DataRank · unranked

0 citations

Simone Marini, Christina Boucher, Mattia Prosperi

Leveraging large language models to predict antibiotic resistance in Mycobacterium tuberculosis

Bioinformatics(2025)10.1093/bioinformatics/btaf232

N/A

0DataRank · unranked

3 citations

Sakshi Pandey, Mohammadali Serajian, Simone Marini, Mattia Prosperi, Christina Boucher +1 more

Long-read reconstruction of many diverse haplotypes with devider

Genome Research(2025)10.1101/gr.280510.125

N/A

0DataRank · unranked

6 citations

Christina Boucher, Yun William Yu, Noelle Noyes, Heng Li, Jim Shaw

Accurate short-read alignment throughr-index-based pangenome indexing

Genome Research(2025)10.1101/gr.279858.124

N/A

0DataRank · unranked

4 citations

Massimiliano Rossi, Eddie Ferro, Marco Antônio Oliva, Erik Garrison, Ben Langmead +2 more

Robust 16S rRNA classification based on a compressed LCA index

Genome Research(2025)10.1101/gr.279846.124

N/A

0DataRank · unranked

2 citations

Christina Boucher, Ben Langmead, Omar Ahmed

Efficient Grammar Compression via RLZ-based RePair

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.22.666196

N/A

0DataRank · unranked

0 citations

Travis Gagie, Christina Boucher, Rahul Varki

Enriched Long-Read Sequencing of Co-circulating Viruses in Complex Samples

Molecular Biology and Evolution(2025)10.1093/molbev/msaf261

N/A

0DataRank · unranked

0 citations

Jonathan Bravo, Tara N. Gaire, Peter Ferm, Montserrat Torremorell, Christina Boucher +2 more

RAmpSim: A Thermodynamic Simulator for Hybridization Capture in Metagenomic Sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.05.692407

N/A

0DataRank · unranked

0 citations

Christina Boucher, Noelle Noyes, Yun William Yu, Aidan Zhang

Devider: Long-Read Reconstruction of Many Diverse Haplotypes

Lecture Notes in Computer Science(2025)10.1007/978-3-031-90252-9_24

N/A

0DataRank · unranked

0 citations

Christina Boucher, Yun William Yu, Noelle Noyes, Alexandra P. Lewis, Jim Shaw

Data structures based on k -mers for querying large collections of sequencing data sets

Genome Research(2020)10.1101/gr.260604.119

N/A

0DataRank · unranked

122 citations

Christina Boucher, Simon J. Puglisi, Paul Medvedev, Mikaël Salson, Rayan Chikhi +1 more

Propensity score synthetic augmentation matching using generative adversarial networks (PSSAM-GAN)

Computer Methods and Programs in Biomedicine Update(2021)10.1016/j.cmpbup.2021.100020

N/A

0DataRank · unranked

19 citations

Christina Boucher, Jiang Bian, Mattia Prosperi, Shantanu Ghosh

Fast and exact quantification of motif occurrences in biological sequences

BMC Bioinformatics(2021)10.1186/s12859-021-04355-6

N/A

0DataRank · unranked

5 citations

Simone Marini, Christina Boucher, Mattia Prosperi

Exploring Prediction of Antimicrobial Resistance Based on Protein Solvent Accessibility Variation

Frontiers in Genetics(2021)10.3389/fgene.2021.564186

N/A

0DataRank · unranked

5 citations

Marco Antônio Oliva, Ilya B. Slizovskiy, Noelle Noyes, Christina Boucher, Mattia Prosperi +1 more

PHONI: Streamed Matching Statistics with Multi-Genome References

CINECA IRIS Institutial research information system (University of Pisa)(2021)10.1109/dcc50243.2021.00027

N/A

0DataRank · unranked

22 citations

Travis Gagie, I Tomohiro, Dominik Köppl, Ben Langmead, Giovanni Manzini +4 more

PFP Compressed Suffix Trees

Society for Industrial and Applied Mathematics eBooks(2021)10.1137/1.9781611976472.5

N/A

0DataRank · unranked

20 citations

Ondřej Cvacho, Travis Gagie, Jan Holub, Giovanni Manzini, Gonzalo Navarro +2 more

MONI: A Pangenomics Index for Finding MEMs

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.06.451246

N/A

0DataRank · unranked

6 citations

Marco Antônio Oliva, Ben Langmead, Travis Gagie, Christina Boucher, Massimiliano Rossi

Efficiently Merging r-indexes

CINECA IRIS Institutial research information system (University of Pisa)(2021)10.1109/dcc50243.2021.00028

N/A

0DataRank · unranked

1 citations

Massimiliano Rossi, Jouni Sirén, Giovanni Manzini, Tamer Kahveci, Travis Gagie +2 more

Christina Boucher

Indexed papers

Top data-sharing exemplar

Papers