Yin Shen

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

22.9Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A comparative encyclopedia of DNA elements in the mouse genome

Nature(2014)10.1038/nature13992

Top 2%

7.9DataRank

Top 2%1946 citations

Yong Cheng, Alessandra Breschi, Jost Vielmetter, Weisheng Wu, Tyrone Ryba +150 more

Papers

Driven by 50 papers — median percentile 95. Top paper: “A comparative encyclopedia of DNA elements in the mouse genome”.

A comparative encyclopedia of DNA elements in the mouse genome

Nature(2014)10.1038/nature13992

Top 2%

7.9DataRank

Top 2%1946 citations

Yong Cheng, Alessandra Breschi, Jost Vielmetter, Weisheng Wu, Tyrone Ryba +150 more

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

An atlas of dynamic chromatin landscapes in mouse fetal development

Nature(2020)10.1038/s41586-020-2093-3

Top 5%

4.8DataRank

Top 5%441 citations

Iros Barozzi, Yuan Zhao, Yanxiao Zhang, Hui Huang, Ah Young Lee +38 more

An atlas of gene regulatory elements in adult mouse cerebrum

Nature(2021)10.1038/s41586-021-03604-1

N/A

4.3DataRank · unranked

209 citations

Sebastian Preissl, Xiaomeng Hou, Ziyang Zhang, Kai Zhang, Yunjiang Qiu +23 more

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Nature Methods(2024)10.1038/s41592-024-02298-3

Top 8%

2.8DataRank

Top 8%216 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +80 more

Coordinated Transcriptional and Catabolic Programs Support Iron-Dependent Adaptation to RAS–MAPK Pathway Inhibition in Pancreatic Cancer

Cancer Discovery(2022)10.1158/2159-8290.cd-22-0044

N/A

2.3DataRank · unranked

77 citations

Jingjie Hu, Charles Cai, Nathan P. Ward, Anthony Venida, Callum Foakes +15 more

Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project

Molecular Cell(2023)10.1016/j.molcel.2023.06.018

N/A

1.7DataRank · unranked

97 citations

Frank Alber, Sarah Aufmkolk, Brian J. Beliveau, Benoit G. Bruneau, Andrew S. Belmont +30 more

High-throughput PRIME-editing screens identify functional DNA variants in the human genome

Molecular Cell(2023)10.1016/j.molcel.2023.11.021

N/A

1.7DataRank · unranked

67 citations

Han Yang, Jovia L. Nierenberg, Yifan Sun, Jiawen Chen, Cooper Beaman +7 more

Multicenter integrated analysis of noncoding CRISPRi screens

Nature Methods(2024)10.1038/s41592-024-02216-7

Top 20%

1.0DataRank

Top 20%54 citations

Josh Tycko, Jin Woo Oh, Lexi R. Bounds, Sager J. Gosai, Lazaros Lataniotis +29 more

Cell-type-specific 3D epigenomes in the developing human cortex

Nature(2020)10.1038/s41586-020-2825-4

N/A

0.768DataRank · unranked

166 citations

Mark-Phillip Pebworth, Xiaoyu Yang, Armen Abnousi, Changxu Fan, Jia Wen +18 more

Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery

Nature Neuroscience(2024)10.1038/s41593-024-01806-0

N/A

0.691DataRank · unranked

29 citations

Gonçalo Castelo-Branco, Fei Chen, Simone Codeluppi, M. Ryan Corces, Jean Fan +26 more

Functional characterization of Alzheimer’s disease genetic variants in microglia

Nature Genetics(2023)10.1038/s41588-023-01506-8

N/A

0.654DataRank · unranked

77 citations

Jia Wen, Han Yang, Ian Rees Jones, Xiaodong Zhu, Weifang Liu +22 more

Deletion of CTCF sites in the SHH locus alters enhancer–promoter interactions and leads to acheiropodia

Nature Communications(2021)10.1038/s41467-021-22470-z

N/A

0.644DataRank · unranked

72 citations

Yichi Zhang, Chenling Xiong, Jingjing Zhao, Ilias Georgakopoulos-Soares, Lauren Kane +9 more

Transcriptional network orchestrating regional patterning of cortical progenitors

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2024795118

N/A

0.606DataRank · unranked

56 citations

Kartik Pattabiraman, Rinaldo Catta-Preta, Olga Golonzhka, Susan Lindtner, Ke Tang +15 more

3D Epigenomic Characterization Reveals Insights Into Gene Regulation and Lineage Specification During Corticogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.24.963652

N/A

0.530DataRank · unranked

7 citations

Mark-Phillip Pebworth, Xiaoyu Yang, Armen Abnousi, Changxu Fan, Jia Wen +17 more

Parallel characterization of cis-regulatory elements for multiple genes using CRISPRpath

Science Advances(2021)10.1126/sciadv.abi4360

N/A

0.510DataRank · unranked

29 citations

Mengchi Wang, Bingkun Li, Kirsty Jamieson, Lina Zheng, Ian Jones +16 more

Dual genome-wide coding and lncRNA screens in neural induction of induced pluripotent stem cells

Cell Genomics(2022)10.1016/j.xgen.2022.100177

N/A

0.505DataRank · unranked

28 citations

Aunoy Poddar, Elpinickie Ninou, Elizabeth Hwang, Mitchel A. Cole, S. John Liu +10 more

A conserved molecular logic for neurogenesis to gliogenesis switch in the cerebral cortex

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2321711121

N/A

0.442DataRank · unranked

18 citations

Kendy Hoang, Brandon L. Meyerink, Pratiksha KC, Kitt Paraiso, Li Wang +13 more

Single-cell polygenic risk scores dissect cellular and molecular heterogeneity of complex human diseases

Nature Biotechnology(2025)10.1038/s41587-025-02725-6

N/A

0.373DataRank · unranked

11 citations

Hantao Shu, Jingtian Zhou, Jasper Rubin-Sigler, Xiaoyu Yang, Yuxi Liu +13 more

SMART-Q: An Integrative Pipeline Quantifying Cell Type-Specific RNA Transcription

PLoS ONE(2020)10.1371/journal.pone.0228760

N/A

0.292DataRank · unranked

6 citations

Seth Bergenholtz, Lenka Maliskova, Mark-Phillip Pebworth, Arnold R. Kriegstein, Yun Li +2 more

Transcriptional Network Orchestrating Regional Patterning of Cortical Progenitors

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.03.366914

N/A

0.241DataRank · unranked

4 citations

Kartik Pattabiraman, Rinaldo Catta-Preta, Olga Golonzhka, Susan Lindtner, Ke Tang +15 more

The PRC2.1 subcomplex opposes G1 progression through regulation of CCND1 and CCND2

eLife(2024)10.7554/elife.97577

N/A

0.208DataRank · unranked

3 citations

Kyle Wang, Harsha Garadi Suresh, Mythili Ketavarapu, Henry N. Ward, Ian Jones +10 more

CRISPR tiling deletion screens reveal functional enhancers of neuropsychiatric risk genes and allelic compensation effects (ACE) on transcription

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.08.616922

N/A

0.165DataRank · unranked

2 citations

Lina Zheng, Lenka Maliskova, Tsz Wai Tam, Yifan Sun, Hongjiang Liu +6 more

Author Correction: Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery

Nature Neuroscience(2024)10.1038/s41593-024-01858-2

N/A

0.118DataRank · unranked

1 citations

Gonçalo Castelo-Branco, Fei Chen, Simone Codeluppi, M. Ryan Corces, Jean Fan +26 more

Parallel Characterization of cis -Regulatory Elements for Multiple Genes Using CRISPRpath

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.19.431931

N/A

0.104DataRank · unranked

1 citations

Mengchi Wang, Bingkun Li, Kirsty Jamieson, Lina Zheng, Ian Jones +16 more

Functional characterization of Alzheimer’s disease genetic variants in microglia

UNC Libraries(2025)10.17615/jm1j-1y96

N/A

0DataRank · unranked

0 citations

Yang Sun, Xiaoyu Yang, Mirunalini Ravichandran, Han Yang, Jia Wen +22 more

SMNN: batch effect correction for single-cell RNA-seq data via supervised mutual nearest neighbor detection

Briefings in Bioinformatics(2020)10.1093/bib/bbaa097

N/A

0DataRank · unranked

33 citations

Gang Li, Huijun Qian, Kirk C. Wilhelmsen, Yin Shen, Yun Li +1 more

SMART-Q: An Integrative Pipeline Quantifying Cell Type-Specific RNA Transcription

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.24.917872

N/A

0DataRank · unranked

1 citations

Xiaoyu Yang, Lenka Maliskova, Yun Li, Yin Shen, Seth Bergenholtz

The C. elegans homolog of TMEM132D , a human panic-disorder and anxiety risk gene, modulates neuronal morphogenesis through the WAVE-regulatory complex

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.16.385906

N/A

0DataRank · unranked

1 citations

Wei Jiang, Shuo Luo, Xiaoyu Yang, Changnan Wang, Bingying Wang +4 more

The C. elegans homolog of human panic-disorder risk gene TMEM132D orchestrates neuronal morphogenesis through the WAVE-regulatory complex

Molecular Brain(2021)10.1186/s13041-021-00767-w

N/A

0DataRank · unranked

11 citations

Wei Jiang, Shuo Luo, Xiaoyu Yang, Changnan Wang, Bingying Wang +4 more

HPRep: Quantifying Reproducibility in HiChIP and PLAC-Seq Datasets

Current Issues in Molecular Biology(2021)10.3390/cimb43020082

N/A

0DataRank · unranked

9 citations

Yuchen Yang, Armen Abnousi, Jiawen Chen, Michael Song, Ian Jones +4 more

A Human Accelerated Region is a Leydig cell GLI2 Enhancer that Affects Male-Typical Behavior

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.27.428524

N/A

0DataRank · unranked

5 citations

Ann H. Ryu, Kirsty Jamieson, Sean Thomas, Yin Shen, Nadav Ahituv +3 more

Genetically encoded chemical crosslinking of RNA in vivo

Nature Chemistry(2022)10.1038/s41557-022-01038-4

N/A

0DataRank · unranked

59 citations

Nanxi Wang, Hongjiang Liu, Bingchen Yu, Ling Jin, Xingjie Ren +3 more

THUNDER: A reference-free deconvolution method to infer cell type proportions from bulk Hi-C data

PLoS Genetics(2022)10.1371/journal.pgen.1010102

N/A

0DataRank · unranked

14 citations

Ruth Huh, Zoey Hou, Cheynna Crowley, Jia Wen, Yin Shen +5 more

High-throughput CRISPRi and CRISPRa technologies in 3D genome regulation for neuropsychiatric diseases

Human Molecular Genetics(2022)10.1093/hmg/ddac193

N/A

0DataRank · unranked

8 citations

Xingjie Ren, Yin Shen, Ian Jones

Phase separation of Myc differentially modulates the transcriptome

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.28.498043

N/A

0DataRank · unranked

14 citations

Chan-I Chung, Jessica Koach, Hongjiang Liu, Ambuja Navalkar, Qian Zhao +7 more

Efficient bi-allelic tagging in human induced pluripotent stem cells using CRISPR

STAR Protocols(2023)10.1016/j.xpro.2023.102084

N/A

0DataRank · unranked

4 citations

Maya Asami Takagi, Yin Shen, Xingjie Ren

High throughput PRIME editing screens identify functional DNA variants in the human genome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.12.548736

N/A

0DataRank · unranked

17 citations

Han Yang, Jovia L. Nierenberg, Yifan Sun, Jiawen Chen, Cooper Beaman +7 more

Combinatorial transcription factor binding encodes cis-regulatory wiring of forebrain GABAergic neurogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.28.546894

N/A

0DataRank · unranked

3 citations

Susan Lindtner, Athéna R. Ypsilanti, James D. Price, Armen Abnousi, Linda Su-Feher +12 more

MYC phase separation selectively modulates the transcriptome

Nature Structural & Molecular Biology(2024)10.1038/s41594-024-01322-6

N/A

0DataRank · unranked

49 citations

Chan-I Chung, Jessica Koach, Hongjiang Liu, Ambuja Navalkar, Hao He +9 more

Phase separation of YAP-MAML2 differentially regulates the transcriptome

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2310430121

N/A

0DataRank · unranked

22 citations

Junjiao Yang, Xiaoyu Yang, Hongjiang Liu, Zhimin Ma, Frank Szulzewsky +4 more

The PRC2.1 Subcomplex Opposes G1 Progression through Regulation of CCND1 and CCND2

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.18.585604

N/A

0DataRank · unranked

0 citations

Kyle Wang, Harsha Garadi Suresh, Mythili Ketavarapu, Henry N. Ward, Ian Jones +10 more

Reviewer #3 (Public Review): The PRC2.1 Subcomplex Opposes G1 Progression through Regulation of CCND1 and CCND2

(2024)10.7554/elife.97577.1.sa0

N/A

0DataRank · unranked

0 citations

Kyle Wang, Harsha Garadi Suresh, Mythili Ketavarapu, Henry N. Ward, Ian R. Jones +10 more

Reviewer #2 (Public Review): The PRC2.1 Subcomplex Opposes G1 Progression through Regulation of CCND1 and CCND2

(2024)10.7554/elife.97577.1.sa1

N/A

0DataRank · unranked

0 citations

Kyle Wang, Harsha Garadi Suresh, Mythili Ketavarapu, Henry N. Ward, Ian R. Jones +10 more

Reviewer #1 (Public Review): The PRC2.1 Subcomplex Opposes G1 Progression through Regulation of CCND1 and CCND2

(2024)10.7554/elife.97577.1.sa2

N/A

0DataRank · unranked

0 citations

Kyle Wang, Harsha Garadi Suresh, Mythili Ketavarapu, Henry N. Ward, Ian R. Jones +10 more

The PRC2.1 Subcomplex Opposes G1 Progression through Regulation of CCND1 and CCND2

eLife(2024)10.7554/elife.97577.1

N/A

0DataRank · unranked

0 citations

Kyle Wang, Harsha Garadi Suresh, Mythili Ketavarapu, Henry N. Ward, Ian Jones +10 more

Cell-type specific inference from bulk RNA-sequencing data by integrating single cell reference profiles via EPIC-unmix

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.23.595514

N/A

0DataRank · unranked

0 citations

Quan Sun, Xinyue Zeng, Xiaoyu Yang, Fei Liu, Jinying Zhao +5 more

Comparative characterization of human accelerated regions in neurons

Nature(2025)10.1038/s41586-025-08622-x

N/A

0DataRank · unranked

22 citations

Han Yang, Charles Q. Cai, Cooper Beaman, Xiaoyu Yang, Hongjiang Liu +14 more

Cell type-specific inference from bulk RNA-sequencing data by integrating single-cell reference profiles via EPIC-unmix

Genome biology(2025)10.1186/s13059-025-03847-5

N/A

0DataRank · unranked

2 citations

Quan Sun, Xinyue Zeng, Gang Li, Xiaoyu Yang, Fei Liu +6 more

High-throughput PRIME-editing screens identify functional DNA variants in the human genome

UNC Libraries(2025)10.17615/bw8x-z178

N/A

0DataRank · unranked

0 citations

Jovia L. Nierenberg, Thu Huong Pham, Vivek Narayan, Yin Shen, Han Yang +8 more

Yin Shen

Indexed papers

Top data-sharing exemplar

Papers