Joseph A. Loo

Also affiliated with Charles R. Drew University of Medicine and Science

ChemistryArts and HumanitiesBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 56 papers. Top paper: “Structural basis for L-isoaspartyl-containing protein recognition by the human PCMTD1 cullin-RING E3 ubiquitin ligase”.

Structural basis for L-isoaspartyl-containing protein recognition by the human PCMTD1 cullin-RING E3 ubiquitin ligase

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110735

N/A

0.208DataRank · unranked

3 citations

Boyu Zhao, Cameron Flowers, Elizabeth Oroudjeva, J. K. Winter, Vijaya Pandey +6 more

Top-down mass spectrometry of native proteoforms and their complexes: A community study

Research Square(2023)10.21203/rs.3.rs-3228472/v1

N/A

0.165DataRank · unranked

2 citations

Tanja Habeck, Kyle A. Brown, Benjamin J. Des Soye, Carter Lantz, Mowei Zhou +17 more

Structural basis of heme scavenging by the ChtA and HtaA hemophores in Corynebacterium diphtheriae

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110633

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0.104DataRank · unranked

1 citations

Andrew K. Goring, Yuri Lee, Megan Chen, Brendan J. Mahoney, M.R. Sawaya +4 more

Kinetics and Optimization of the Lysine–Isopeptide Bond Forming Sortase Enzyme from Corynebacterium diphtheriae

Bioconjugate Chemistry(2020)10.1021/acs.bioconjchem.0c00163

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0DataRank · unranked

11 citations

Scott A. McConnell, Ken Ellis‐Guardiola, John M. Muroski, Rachel McAllister, Justin Yu +7 more

The Human Proteoform Project: A Plan to Define the Human Proteome

Preprints.org(2020)10.20944/preprints202010.0368.v1

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0DataRank · unranked

15 citations

Jeffrey N. Agar, Julia Chamot‐Rooke, Paul O. Danis, Ying Ge, Joseph A. Loo +4 more

Secreted and cell surface proteome analysis of pathogenic Corynebacterium diphtheriae reveals proteins relevant to virulence

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.06.285155

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0DataRank · unranked

1 citations

Yu Chen, Robert Clubb, Joseph A. Loo, Andrew K. Goring

Leveraging immonium ions for identifying and targeting acyl-lysine modifications in proteomic datasets

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.20.052191

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0DataRank · unranked

0 citations

Janine Y. Fu, Hong Hanh Nyugen, Rachel R. Ogorzalek Loo, Joseph A. Loo, John M. Muroski

Internal Fragments Generated by Electron Ionization Dissociation Enhances Protein Top-down Mass Spectrometry

ChemRxiv(2020)10.26434/chemrxiv.11573337.v1

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0DataRank · unranked

0 citations

Carter Lantz, Taylor Perkins, Janine Y. Fu, Wonhyuek Jung, Rachel R. Ogorzalek Loo +2 more

The Human Proteoform Project: Defining the human proteome

Science Advances(2021)10.1126/sciadv.abk0734

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0DataRank · unranked

244 citations

Jeffrey N. Agar, Julia Chamot‐Rooke, Paul O. Danis, Ying Ge, Joseph A. Loo +4 more

ClipsMS: An Algorithm for Analyzing Internal Fragments Resulting from Top-Down Mass Spectrometry

Journal of Proteome Research(2021)10.1021/acs.jproteome.0c00952

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0DataRank · unranked

72 citations

Muhammad A. Zenaidee, Benqian Wei, Zachary Hemminger, Rachel R. Ogorzalek Loo, Joseph A. Loo +1 more

Three‐repeat and four‐repeat tau isoforms form different oligomers

Protein Science(2021)10.1002/pro.4257

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0DataRank · unranked

30 citations

Jennifer Portillo, Carter Lantz, Paul M. Seidler, Natalie Sarafian, Joseph A. Loo +2 more

Towards understanding the formation of internal fragments generated by collisionally activated dissociation for top-down mass spectrometry

Analytica Chimica Acta(2021)10.1016/j.aca.2021.339400

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0DataRank · unranked

22 citations

Muhammad A. Zenaidee, Carter Lantz, Rachel R. Ogorzalek Loo, Joseph A. Loo, Benqian Wei

Insight into the molecular basis of substrate recognition by the wall teichoic acid glycosyltransferase TagA

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.101464

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0DataRank · unranked

7 citations

Brendan J. Mahoney, Andrew K. Goring, Sung-Wook Yi, Denise P. Tran, Duilio Cascio +7 more

Characterization of protein–ligand binding interactions of enoyl‐ACP reductase ( FabI ) by native MS reveals allosteric effects of coenzymes and the inhibitor triclosan

Protein Science(2021)10.1002/pro.4252

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0DataRank · unranked

6 citations

Denise P. Tran, Muhammad A. Zenaidee, Joseph A. Loo, P. Matthew Joyner

ClipsMS: An Algorithm for Analyzing Internal Fragments Resulting from Top-Down Mass Spectrometry

ChemRxiv(2021)10.26434/chemrxiv.13518050

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0DataRank · unranked

3 citations

Muhammad A. Zenaidee, Benqian Wei, Zachary Hemminger, Rachel R. Ogorzalek Loo, Joseph A. Loo +1 more

ClipsMS: An Algorithm for Analyzing Internal Fragments Resulting from Top-Down Mass Spectrometry

ChemRxiv(2021)10.26434/chemrxiv.13518050.v1

N/A

0DataRank · unranked

0 citations

Muhammad A. Zenaidee, Benqian Wei, Zachary Hemminger, Rachel R. Ogorzalek Loo, Joseph A. Loo +1 more

Amyloid fibrils in FTLD-TDP are composed of TMEM106B and not TDP-43

Nature(2022)10.1038/s41586-022-04670-9

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0DataRank · unranked

180 citations

Qin Cao, M.R. Sawaya, Romany Abskharon, P. Ge, Michael DeTure +6 more

Native Top-Down Mass Spectrometry with Collisionally Activated Dissociation Yields Higher-Order Structure Information for Protein Complexes

Journal of the American Chemical Society(2022)10.1021/jacs.2c06726

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0DataRank · unranked

50 citations

Benqian Wei, Boyu Zhao, Wonhyeuk Jung, Andrew K. Goring, Jessie Le +4 more

Top-down mass spectrometry and assigning internal fragments for determining disulfide bond positions in proteins

The Analyst(2022)10.1039/d2an01517j

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0DataRank · unranked

21 citations

Muhammad A. Zenaidee, Carter Lantz, Brad J. Williams, Sarah M. Totten, Rachel R. Ogorzalek Loo +2 more

Superoxide Dismutase 1 Folding Stability as a Target for Molecular Tweezers in SOD1‐Related Amyotrophic Lateral Sclerosis

ChemBioChem(2022)10.1002/cbic.202200396

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0DataRank · unranked

12 citations

Yasser B. Ruiz‐Blanco, Zamira Fetahaj, David Gnutt, Carter Lantz, Joseph A. Loo +3 more

The Acyl-Proteome of Syntrophus aciditrophicus Reveals Metabolic Relationships in Benzoate Degradation

Molecular & Cellular Proteomics(2022)10.1016/j.mcpro.2022.100215

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0DataRank · unranked

10 citations

Janine Y. Fu, Hong Hanh Nguyen, Neil Q. Wofford, Housna Mouttaki, Kimberly L. James +5 more

On the Mechanism of Theta Capillary Nanoelectrospray Ionization for the Formation of Highly Charged Protein Ions Directly from Native Solutions

Analytical Chemistry(2022)10.1021/acs.analchem.2c01654

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0DataRank · unranked

4 citations

Muhammad A. Zenaidee, Joseph A. Loo, Rachel R. Ogorzalek Loo, William A. Donald, Susannah L. Brown

Dynamic acylome reveals metabolite driven modifications in Syntrophomonas wolfei

Frontiers in Microbiology(2022)10.3389/fmicb.2022.1018220

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0DataRank · unranked

4 citations

John M. Muroski, Mark A. Arbing, Jessica A. Salguero, Neil Q. Wofford, Michael J. McInerney +4 more

Top-Down Mass Spectrometry and Assigning Internal Fragments for Determining Disulfide Bond Positions in Proteins

ChemRxiv(2022)10.26434/chemrxiv-2022-65k4h

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0DataRank · unranked

2 citations

Muhammad A. Zenaidee, Carter Lantz, Brad J. Williams, Sarah M. Totten, Rachel Loo +2 more

Amyloid fibrils in frontotemporal lobar degeneration with TDP-43 inclusions are composed of TMEM106B, rather than TDP-43

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.31.478523

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0DataRank · unranked

1 citations

Qin Cao, M.R. Sawaya, Romany Abskharon, P. Ge, Michael DeTure +6 more

On the mechanism of theta capillary nanoelectrospray ionization for the formation of highly charged protein ions directly from native solutions

ChemRxiv(2022)10.26434/chemrxiv-2022-lvptc

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0DataRank · unranked

0 citations

Muhammad A. Zenaidee, Joseph A. Loo, Rachel Ogorzalek Loo, William A. Donald, Susannah L. Brown

The metabolite α-ketobutyrate increases health and life spans by activating AMPK

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.10.511641

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0DataRank · unranked

0 citations

Brett Lomenick, Min Chai, Wilson Huang, Jessie Chu, Laurent Vergnes +23 more

Added Value of Internal Fragments for Top-Down Mass Spectrometry of Intact Monoclonal Antibodies and Antibody–Drug Conjugates

Analytical Chemistry(2023)10.1021/acs.analchem.3c01426

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0DataRank · unranked

31 citations

Carter Lantz, Weijing Liu, Rosa Viner, Rachel R. Ogorzalek Loo, Iain D. G. Campuzano +2 more

Development of a Novel Electrochemiluminescence ELISA for Quantification of α-Synuclein Phosphorylated at Ser129 in Biological Samples

ACS Chemical Neuroscience(2023)10.1021/acschemneuro.2c00676

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0DataRank · unranked

31 citations

Simon Hornung, Hash Brown Taha, Karl Biggs, Ibrar Siddique, Lea M. Chamoun +7 more

The Shr receptor from Streptococcus pyogenes uses a cap and release mechanism to acquire heme–iron from human hemoglobin

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2211939120

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0DataRank · unranked

10 citations

Brendan J. Mahoney, Jess Soule, Andrew K. Goring, Jordan Ford, Joseph A. Loo +3 more

Characterization of Molecular Tweezer Binding on α-Synuclein with Native Top-Down Mass Spectrometry and Ion Mobility-Mass Spectrometry Reveals a Mechanism for Aggregation Inhibition

Journal of the American Society for Mass Spectrometry(2023)10.1021/jasms.3c00281

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0DataRank · unranked

13 citations

Jaybree Lopez, Andrew K. Goring, Muhammad A. Zenaidee, Karl Biggs, Julian P. Whitelegge +6 more

The basal and major pilins in the Corynebacterium diphtheriae SpaA pilus adopt similar structures that competitively react with the pilin polymerase

Biopolymers(2023)10.1002/bip.23539

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0DataRank · unranked

7 citations

Nicole A. Cheung, Brendan J. Mahoney, Scott A. McConnell, Jack M. Scully, Janine Y. Fu +5 more

Mapping Molecular Interaction Interface Between Diaphanous Formin-2 and Neuron-Specific Drebrin A

Journal of Molecular Biology(2023)10.1016/j.jmb.2023.168334

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0DataRank · unranked

5 citations

Denise P. Tran, Joseph A. Loo, Elena E. Grintsevich, Sargis Srapyan

Development and atomic structure of a new fluorescence-based sensor to probe heme transfer in bacterial pathogens

Journal of Inorganic Biochemistry(2023)10.1016/j.jinorgbio.2023.112368

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0DataRank · unranked

4 citations

Andrew K. Goring, Yueying Wang, Poojita Dasika, Anqi Zhou, Emmitt Grossbard +4 more

Detection of Lipid-Bound Bacteriorhodopsin Trimer Complex Directly from Purple Membrane by Native Mass Spectrometry

Journal of the American Society for Mass Spectrometry(2023)10.1021/jasms.3c00314

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0DataRank · unranked

4 citations

Joseph A. Loo, Jessie Le

The Basal and Major Pilins in the Corynebacterium diphtheriae SpaA Pilus Adopt Similar Structures that Competitively React with the Pilin Polymerase

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.23.529612

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0DataRank · unranked

1 citations

Nicole A. Cheung, Brendan J. Mahoney, Scott A. McConnell, Jack M. Scully, Janine Y. Fu +5 more

The Human Proteoform Project: Defining the human proteome

Zenodo (CERN European Organization for Nuclear Research)(2023)10.1126/sciadv.abk07

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0DataRank · unranked

0 citations

Jeffrey N. Agar, Julia Chamot‐Rooke, Paul O. Danis, Ying Ge, Joseph A. Loo +5 more

Top-down proteomics

Nature Reviews Methods Primers(2024)10.1038/s43586-024-00318-2

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0DataRank · unranked

126 citations

Joseph A. Loo, Yury O. Tsybin, Xiaowen Liu, Si Wu, Julia Chamot‐Rooke +5 more

Top-down mass spectrometry of native proteoforms and their complexes: a community study

Nature Methods(2024)10.1038/s41592-024-02279-6

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0DataRank · unranked

39 citations

Kyle A. Brown, Benjamin J. Des Soye, Carter Lantz, Mowei Zhou, Novera Alam +17 more

Internal Fragments Enhance Middle-Down Mass Spectrometry Structural Characterization of Monoclonal Antibodies and Antibody-Drug Conjugates

Analytical Chemistry(2024)10.1021/acs.analchem.3c04526

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0DataRank · unranked

13 citations

Carter Lantz, Rachel R. Ogorzalek Loo, Iain D. G. Campuzano, Joseph A. Loo, Benqian Wei

Are Internal Fragments Observable in Electron Based Top-Down Mass Spectrometry?

Molecular & Cellular Proteomics(2024)10.1016/j.mcpro.2024.100814

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0DataRank · unranked

12 citations

Carolina Rojas Ramírez, Steven A. DeFiglia, Carson W. Szot, Jessie Le, Carter Lantz +10 more

Composition and in situ structure of the Methanospirillum hungatei cell envelope and surface layer

Science Advances(2024)10.1126/sciadv.adr8596

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0DataRank · unranked

4 citations

Jiayan Zhang, Shiqing Liao, Anne M. Henstra, Deborah R. Leon, Jonathan Erde +5 more

The Exoproteome and Surfaceome of Toxigenic Corynebacterium diphtheriae 1737 and Its Response to Iron Restriction and Growth on Human Hemoglobin

Journal of Proteome Research(2024)10.1021/acs.jproteome.4c00443

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0DataRank · unranked

3 citations

S Hale, Poojita Dasika, Yu Chen, Robert Clubb, Joseph A. Loo +1 more

Insight into the autoproteolysis mechanism of the RsgI9 anti‐σ factor from Clostridium thermocellum

Proteins Structure Function and Bioinformatics(2024)10.1002/prot.26690

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0DataRank · unranked

2 citations

Brendan J. Mahoney, Andrew K. Goring, Tobie Jessup, Rachel R. Ogorzalek Loo, Joseph A. Loo +2 more

Copper-dependent halogenase catalyses unactivated C−H bond functionalization

Nature(2025)10.1038/s41586-024-08362-4

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0DataRank · unranked

37 citations

Masao Ōhashi, Jessie Le, Pan‐Pan Chen, Qingyang Zhou, Songrong Qu +8 more

Combining MicroED and native mass spectrometry for structural discovery of enzyme–small molecule complexes

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2503780122

N/A

0DataRank · unranked

4 citations

Cameron W. Flowers, Mengting Liu, Matthew P. Agdanowski, Samuel Johnson, J. Summers +16 more

Retention and Rearrangement of Membrane Protein Complexes’ Higher Order Structure by Collisionally Activated Dissociation- and Electron Capture Dissociation-Mass Spectrometry

Journal of the American Chemical Society(2025)10.1021/jacs.5c05797

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0DataRank · unranked

1 citations

Wonhyeuk Jung, Mark A. Arbing, Pascal F. Egea, Rachel R. Ogorzalek Loo, Joseph A. Loo +1 more

Structural basis for L-isoaspartyl-containing protein recognition by the PCMTD1 cullin-RING E3 ubiquitin ligase

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.21.654933

N/A

0DataRank · unranked

1 citations

Boyu Zhao, Cameron Flowers, Elizabeth Oroudjeva, J. K. Winter, Vijaya Pandey +6 more

Allosteric Modulation of Pathological Ataxin-3 Aggregation: A Path to Spinocerebellar Ataxia Type-3 Therapies

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.22.633970

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0DataRank · unranked

0 citations

Sara Duarte‐Silva, Pedro M. Martins, Beatriz Rodrigues, Débora Serrenho, Daniela Vilasboas‐Campos +22 more

Mass spectrometry structural analysis of intrinsically disordered phosphoproteins

International Journal of Mass Spectrometry(2025)10.1016/j.ijms.2025.117455

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0DataRank · unranked

0 citations

Muhammad A. Zenaidee, Denise P. Tran, Karl Biggs, Gal Bitan, Rachel R. Ogorzalek Loo +2 more

An Organometallic Chemistry Approach to Peptide Tricycles

ChemRxiv(2025)10.26434/chemrxiv-2025-mkz71

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0DataRank · unranked

0 citations

Michael Rebelo, R. Jenkins, E. Olivares, Rachel R. Ogorzalek Loo, Songrong Qu +12 more

Leveraging bioorthogonal conjugation for alpha synuclein fibril surveillance

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.12.675751

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0DataRank · unranked

0 citations

Shuang Wu, Gretchen Fujimura, A Lopez Heredia, Cameron W. Flowers, Chuanqi Sun +4 more

Higher-order structural characterisation of native proteins and complexes by top-down mass spectrometry

Chemical Science(2020)10.1039/d0sc04392c

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0DataRank · unranked

157 citations

Carter Lantz, Kyle A. Brown, Ying Ge, Ljiljana Paša‐Tolić, Joseph A. Loo +2 more

Allosteric Modulation of Pathological Ataxin‐3 Aggregation: A Path to Spinocerebellar Ataxia Type‐3 Therapies

Advanced Science(2025)10.1002/advs.202502216

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0DataRank · unranked

0 citations

Sara Duarte‐Silva, Pedro M. Martins, Beatriz Rodrigues, Débora Serrenho, Daniela Vilasboas‐Campos +24 more

Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry

Journal of the American Society for Mass Spectrometry(2020)10.1021/jasms.0c00036

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0DataRank · unranked

128 citations

Luca Fornelli, Yury O. Tsybin, Joseph A. Loo, Henrique S. Seckler, Jeffrey N. Agar +55 more

Leveraging Immonium Ions for Targeting Acyl‐Lysine Modifications in Proteomic Datasets

PROTEOMICS(2020)10.1002/pmic.202000111

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0DataRank · unranked

19 citations

Janine Y. Fu, Hong Hanh Nguyen, Rachel R. Ogorzalek Loo, Joseph A. Loo, John M. Muroski