Dawn Thompson

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 28 papers. Top paper: “YMAP: a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens”.

YMAP: a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens

Genome Medicine(2014)10.1186/s13073-014-0100-8

N/A

4.5DataRank · unranked

151 citations

Jason Funt, Mor N. Lurie-Weinberger, Prisca Liberali, Chad L. Myers, Judith Berman +2 more

Evolutionary principles of modular gene regulation in yeasts

eLife(2013)10.7554/elife.00603

N/A

3.2DataRank · unranked

90 citations

Sushmita Roy, Mark P Styczynsky, Jenna Pfiffner, Courtney French, Amanda Socha +11 more

Gene duplication and the evolution of ribosomal protein gene regulation in yeast

Proceedings of the National Academy of Sciences(2010)10.1073/pnas.0911905107

N/A

2.6DataRank · unranked

74 citations

Jenna Pfiffner, Courtney French, Amanda Socha, Prisca Liberali, Courtney E. French +2 more

GeNets: a unified web platform for network-based genomic analyses

Nature Methods(2018)10.1038/s41592-018-0039-6

N/A

2.4DataRank · unranked

63 citations

April Kim, Joseph Rosenbluh, Heiko Horn, Liraz Greenfeld, David An +21 more

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Nature Biotechnology(2011)10.1038/nbt.1883

N/A

1.5DataRank · unranked

22458 citations

Brian J. Haas, Moran Yassour, Joshua Z. Levin, Ido Amit, Xian Adiconis +19 more

Fungal regulatory evolution: cis and trans in the balance

FEBS Letters(2009)10.1016/j.febslet.2009.11.032

N/A

1.1DataRank · unranked

25 citations

Prisca Liberali, Dawn Thompson

Comprehensive comparative analysis of strand-specific RNA sequencing methods

Nature Methods(2010)10.1038/nmeth.1491

N/A

0.996DataRank · unranked

765 citations

Moran Yassour, Xian Adiconis, Irene Newsham, Nir Friedman, Andreas Gnirke +3 more

Comparative analysis of RNA sequencing methods for degraded or low-input samples

Nature Methods(2013)10.1038/nmeth.2483

N/A

0.946DataRank · unranked

549 citations

Diego Borges-Rivera, Rahul Satija, David S. DeLuca, Michele A. Busby, Aaron M. Berlin +11 more

Comparative Functional Genomics of the Fission Yeasts

Science(2011)10.1126/science.1203357

N/A

0.940DataRank · unranked

524 citations

Zehua Chen, Moran Yassour, Brian J. Haas, Naomi Habib, Ilan Wapinski +64 more

Mitochondrial dysfunction remodels one-carbon metabolism in human cells

eLife(2016)10.7554/elife.10575

N/A

0.917DataRank · unranked

452 citations

Shao-En Ong, Olga Goldberger, Jun Peng, Rohit Sharma, Scott B. Vafai +11 more

From elements to modules: regulatory evolution in Ascomycota fungi

Current Opinion in Genetics & Development(2009)10.1016/j.gde.2009.09.007

N/A

0.909DataRank · unranked

47 citations

Audrey P Gasch, Prisca Liberali, Dawn Thompson, Audrey P. Gaschi, Dana J. Wohlbach

The evolution of drug resistance in clinical isolates of Candida albicans

eLife(2015)10.7554/elife.00662

N/A

0.885DataRank · unranked

364 citations

Darren Abbey, Luca Issi, Candace Guiducci, Diego A Martinez, Toni Marie Delorey +10 more

Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes

Science(2016)10.1126/science.aad1431

N/A

0.864DataRank · unranked

316 citations

Charles H. Haitjema, John K. Henske, Sean P. Gilmore, Diego Borges-Rivera, Anna Lipzen +14 more

The evolution, evolvability and engineering of gene regulatory DNA

Nature(2022)10.1038/s41586-022-04506-6

N/A

0.854DataRank · unranked

295 citations

Carl G. de Boer, Jennifer Molinet, Moran Yassour, Lin Fan, Xian Adiconis +6 more

Development and evaluation of RNA-seq methods

Genome Biology(2010)10.1186/gb-2010-11-s1-p26

N/A

0.833DataRank · unranked

9 citations

Xian Adiconis, Moran Yassour, Dawn Thompson, Mitchell Guttman, Lin Fan +7 more

The Role of Nucleosome Positioning in the Evolution of Gene Regulation

PLoS Biology(2010)10.1371/journal.pbio.1000414

N/A

0.816DataRank · unranked

230 citations

Amanda Socha, Prisca Liberali, Oliver J. Rando, Dawn Thompson, Alexander M. Tsankov

Comparative Analysis of Gene Regulatory Networks: From Network Reconstruction to Evolution

Annual Review of Cell and Developmental Biology(2015)10.1146/annurev-cellbio-100913-012908

N/A

0.788DataRank · unranked

190 citations

Prisca Liberali, Sushmita Roy, Dawn Thompson

Correction: Evolutionary principles of modular gene regulation in yeasts

eLife(2013)10.7554/elife.01114

N/A

0.734DataRank · unranked

13 citations

Sushmita Roy, Mark P. Styczynski, Jenna Pfiffner, Courtney French, Amanda Socha +11 more

Convergent Evolution of Calcineurin Pathway Roles in Thermotolerance and Virulence inCandida glabrata

G3 Genes|Genomes|Genetics(2012)10.1534/g3.112.002279

N/A

0.686DataRank · unranked

96 citations

Jay H. Konieczka, Deborah J. Springer, Samantha E Bowen, Jing Zhang, Fitz Gerald S. Silao +10 more

Determinants of Divergent Adaptation and Dobzhansky-Muller Interaction in Experimental Yeast Populations

Current Biology(2010)10.1016/j.cub.2010.06.022

N/A

0.644DataRank · unranked

72 citations

Jason Funt, Snehit Prabhu, Amanda Socha, Caroline Sirjusingh, Jeremy R. Dettman +7 more

Y MAP : a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens

Genome Medicine(2014)10.1186/preaccept-1207699561372700

N/A

0.489DataRank · unranked

25 citations

Jason Funt, Mor N. Lurie-Weinberger, Prisca Liberali, Chad L. Myers, Judith Berman +2 more

A comprehensive fitness landscape model reveals the evolutionary history and future evolvability of eukaryotic cis -regulatory DNA sequences

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.17.430503

N/A

0.307DataRank · unranked

4 citations

Carl G. de Boer, Moran Yassour, Jennifer Molinet, Lin Fan, Xian Adiconis +6 more

Erratum: Corrigendum: Comparative analysis of RNA sequencing methods for degraded or low-input samples

Nature Methods(2014)10.1038/nmeth0214-210e

N/A

0.212DataRank · unranked

2 citations

Diego Borges-Rivera, Rahul Satija, David S. DeLuca, Michele A. Busby, Aaron M. Berlin +11 more

Author response: The evolution of drug resistance in clinical isolates of Candida albicans

(2014)10.7554/elife.00662.023

N/A

0.104DataRank · unranked

1 citations

Darren Abbey, Luca Issi, Candace Guiducci, Diego A Martinez, Toni Marie Delorey +10 more

GeNets: A unified web platform for network-based analyses of genomic data

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/196303

N/A

0.104DataRank · unranked

1 citations

April Kim, Joseph Rosenbluh, Heiko Horn, Liraz Greenfeld, David An +21 more

Combinatorics of Cis‐Regulatory Element Evolution in Stress Response Modules of Ascomycete Yeasts

The FASEB Journal(2012)10.1096/fasebj.26.1_supplement.731.11

N/A

0DataRank · unranked

0 citations

Sushmita Roy, Dawn Thompson, Prisca Liberali, Aurian P. García-González, Jay H. Konieczka +1 more

Author response: Evolutionary principles of modular gene regulation in yeasts

(2013)10.7554/elife.00603.031

N/A

0DataRank · unranked

0 citations

Sushmita Roy, Mark P Styczynsky, Jenna Pfiffner, Courtney French, Amanda Socha +11 more

The future of fungi: threats and opportunities

G3 Genes Genomes Genetics(2022)10.1093/g3journal/jkac224

N/A

0DataRank · unranked

55 citations

Judith Berman, David S. Blehert, Robert A. Cramer, Christina A. Cuomo, Cameron R. Currie +29 more