Harm van Bakel

Medicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

4.4Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

SARS-CoV-2 in Transit: Characterization of SARS-CoV-2 Genomes From Venezuelan Migrants in Colombia

International Journal of Infectious Diseases(2021)10.1016/j.ijid.2021.07.069

Top 15%

1.4DataRank

Top 15%7 citations

Nathalia Ballesteros, Marina Muñoz, Sergio Castañeda, Carolina Hernández, Sergio Gomez +17 more

Papers

Driven by 112 papers — median percentile 83. Top paper: “The SARS-CoV-2 B.1.1.529 Omicron virus causes attenuated infection and disease in mice and hamsters”.

The SARS-CoV-2 B.1.1.529 Omicron virus causes attenuated infection and disease in mice and hamsters

Research Square(2021)10.21203/rs.3.rs-1211792/v1

N/A

8.4DataRank · unranked

87 citations

Peter Halfmann, Tadashi Maemura, Kiyoko Iwatsuki‐Horimoto, Shun Iida, Maki Kiso +60 more

Mutations in SARS-CoV-2 variants of concern link to increased spike cleavage and virus transmission

Cell Host & Microbe(2022)10.1016/j.chom.2022.01.006

N/A

5.8DataRank · unranked

197 citations

Ana S. Gonzalez‐Reiche, Sadaf Aslam, Ignacio Mena, Manon Laporte, Rebecca L. Pearl +24 more

SARS-CoV-2 in Transit: Characterization of SARS-CoV-2 Genomes From Venezuelan Migrants in Colombia

International Journal of Infectious Diseases(2021)10.1016/j.ijid.2021.07.069

Top 15%

1.4DataRank

Top 15%7 citations

Nathalia Ballesteros, Marina Muñoz, Sergio Castañeda, Carolina Hernández, Sergio Gomez +17 more

Single-cell multi-cohort dissection of the schizophrenia transcriptome

Science(2024)10.1126/science.adg5136

N/A

1.3DataRank · unranked

125 citations

Shahin Mohammadi, José Dávila-Velderrain, Sivan Subburaju, Daniel Reed Tso, Makayla Hourihan +196 more

Phenotypes of disease severity in a cohort of hospitalized COVID-19 patients: Results from the IMPACC study

EBioMedicine(2022)10.1016/j.ebiom.2022.104208

Top 16%

1.3DataRank

Top 16%73 citations

Joanna Schaenman, Naresh Doni Jayavelu, Carly E. Milliren, Carolyn S. Calfee, Charles B. Cairns +53 more

Immunophenotyping assessment in a COVID-19 cohort (IMPACC): A prospective longitudinal study

Science Immunology(2021)10.1126/sciimmunol.abf3733

Top 17%

1.2DataRank

Top 17%74 citations

Nadine Rouphael, Holden T. Maecker, Ruth R. Montgomery, Joann Diray‐Arce, Steven H. Kleinstein +51 more

Massively parallel characterization of regulatory elements in the developing human cortex

Science(2024)10.1126/science.adh0559

N/A

1.2DataRank · unranked

61 citations

Sean Whalen, Marilyn Steyert, Ryan Ziffra, Pawel F. Przytycki, Fumitaka Inoue +197 more

The PsychENCODE project

Nature Neuroscience(2015)10.1038/nn.4156

N/A

0.927DataRank · unranked

483 citations

Chunyu Liu, James A. Knowles, Flora M. Vaccarino, Philip L. De Jager, Gregory E. Crawford +87 more

Integrated longitudinal multiomics study identifies immune programs associated with acute COVID-19 severity and mortality

Journal of Clinical Investigation(2024)10.1172/jci176640

N/A

0.910DataRank · unranked

32 citations

Cole Maguire, Ravi K. Patel, Pramod Shinde, Anna Konstorum, Casey P. Shannon +38 more

Sensitivity of rapid antigen tests for Omicron subvariants of SARS‐CoV‐2

Journal of Medical Virology(2023)10.1002/jmv.28788

N/A

0.688DataRank · unranked

13 citations

Seiya Yamayoshi, Peter Halfmann, Nancy A. Wilson, Max Bobholz, William C. Vuyk +9 more

A compendium of multi-omics data illuminating host responses to lethal human virus infections

Scientific Data(2024)10.1038/s41597-024-03124-3

Top 35%

0.560DataRank

Top 35%18 citations

Lindsey Anderson, Shufang Fan, Kevin Walters, Peter Halfmann, Danielle Smith +24 more

Characterization of Novel Cross-Reactive Influenza B Virus Hemagglutinin Head Specific Antibodies That Lack Hemagglutination Inhibition Activity

Journal of Virology(2020)10.1128/jvi.01185-20

N/A

0.477DataRank · unranked

9 citations

Carole Henry, Meagan McMahon, Kaijun Jiang, Shirin Strohmeier, Harm van Bakel +3 more

Limb reduction in an Esco2 cohesinopathy mouse model is mediated by p53-dependent apoptosis and vascular disruption

Nature Communications(2024)10.1038/s41467-024-51328-3

N/A

0.294DataRank · unranked

6 citations

Ana S. Gonzalez‐Reiche, Xianxiao Zhou, Braulio Valdebenito‐Maturana, Xiaoqian Ye, Bin Zhang +4 more

Real Time Investigation of a large Nosocomial Influenza A Outbreak Informed by Genomic Epidemiology

medRxiv(2020)10.1101/2020.05.10.20096693

N/A

0DataRank · unranked

6 citations

Jordan Ehni, Ana S. Gonzalez‐Reiche, Juan Manuel Carreño, Elena Hirsch, Jessica Tan +22 more

PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks

medRxiv(2020)10.1101/2020.05.11.20098103

N/A

0DataRank · unranked

1 citations

Theodore R. Pak, Ajay Obla, Amy C. Dupper, Kieran Chacko, Lindsey Fox +14 more

A Library of Yeast Transcription Factor Motifs Reveals a Widespread Function for Rsc3 in Targeting Nucleosome Exclusion at Promoters

UNC Libraries(2020)10.17615/dr7d-s563

N/A

0DataRank · unranked

0 citations

Aseem Z. Ansari, Desiree Tillo, Sanié Mnaimneh, Ally Yang, Shaheynoor Talukder +18 more

Activity of convalescent and vaccine serum against SARS-CoV-2 Omicron

Nature(2021)10.1038/s41586-022-04399-5

N/A

0DataRank · unranked

533 citations

Hala Alshammary, Johnstone Tcheou, Gagandeep Singh, Ariel Raskin, Hisaaki Kawabata +38 more

SARS-CoV-2 mRNA vaccination induces functionally diverse antibodies to NTD, RBD, and S2

Cell(2021)10.1016/j.cell.2021.06.005

N/A

0DataRank · unranked

313 citations

Mahima Thapa, Tinting Lei, Shaza M. Sayed Ahmed, Daniel C. Adelsberg, Juan Manuel Carreño +42 more

Intestinal Host Response to SARS-CoV-2 Infection and COVID-19 Outcomes in Patients With Gastrointestinal Symptoms

Gastroenterology(2021)10.1053/j.gastro.2021.02.056

N/A

0DataRank · unranked

162 citations

Divya Jha, Francesca Cossarini, Ana S. Gonzalez‐Reiche, Minami Tokuyama, Teresa Aydillo +48 more

Contribution of SARS-CoV-2 Accessory Proteins to Viral Pathogenicity in K18 Human ACE2 Transgenic Mice

Journal of Virology(2021)10.1128/jvi.00402-21

N/A

0DataRank · unranked

145 citations

Desarey Morales Vasquez, Jun‐Gyu Park, Kevin Chiem, Anna Allué‐Guardia, Andreu Garcia‐Vilanova +12 more

Limited intestinal inflammation despite diarrhea, fecal viral RNA and SARS-CoV-2-specific IgA in patients with acute COVID-19

Scientific Reports(2021)10.1038/s41598-021-92740-9

N/A

0DataRank · unranked

75 citations

Alice Chen-Liaw, Francesca Cossarini, Alexandra E. Livanos, Matthew P. Spindler, Tamar Plitt +22 more

Evidence for retained spike-binding and neutralizing activity against emerging SARS-CoV-2 variants in serum of COVID-19 mRNA vaccine recipients

EBioMedicine(2021)10.1016/j.ebiom.2021.103626

N/A

0DataRank · unranked

55 citations

Hala Alshammary, Gagandeep Singh, Ariel Raskin, Fatima Amanat, Angela A. Amoako +10 more

Single-cell analysis identifies a key role for Hhip in murine coronal suture development

Nature Communications(2021)10.1038/s41467-021-27402-5

N/A

0DataRank · unranked

37 citations

Ana S. Gonzalez‐Reiche, Madrikha Saturne, Susan M. Motch Perrine, Xianxiao Zhou, Ana Borges +6 more

Evolution of influenza A virus in intensive and free-range swine farms in Spain

Virus Evolution(2021)10.1093/ve/veab099

N/A

0DataRank · unranked

24 citations

Gustavo del Real, Jayeeta Dutta, Zenab Khan, Harm van Bakel, M. Ángeles Martín del Burgo +3 more

Mutations in the Hemagglutinin Stalk Domain Do Not Permit Escape from a Protective, Stalk-Based Vaccine-Induced Immune Response in the Mouse Model

mBio(2021)10.1128/mbio.03617-20

N/A

0DataRank · unranked

37 citations

Juan Manuel Carreño, Meagan McMahon, Kaijun Jiang, Harm van Bakel, Patrick C. Wilson +2 more

Human Anti-neuraminidase Antibodies Reduce Airborne Transmission of Clinical Influenza Virus Isolates in the Guinea Pig Model

Journal of Virology(2021)10.1128/jvi.01421-21

N/A

0DataRank · unranked

30 citations

George O’Dell, Matthew M. Hernandez, Emilia Mia Sordillo, Zenab Kahn, Divya Kriti +7 more

Identification and Characterization of Novel Antibody Epitopes on the N2 Neuraminidase

mSphere(2021)10.1128/msphere.00958-20

N/A

0DataRank · unranked

24 citations

Meagan McMahon, Juan Manuel Carreño, Christina Capuano, Kaijun Jiang, Viviana Simon +4 more

Molecular evidence of SARS-CoV-2 in New York before the first pandemic wave

Nature Communications(2021)10.1038/s41467-021-23688-7

N/A

0DataRank · unranked

24 citations

Ana S. Gonzalez‐Reiche, Hala Alshammary, Shelcie Fabre, Zenab Khan, Adriana van de Guchte +21 more

Robust clinical detection of SARS‐CoV‐2 variants by RT‐PCR/MALDI‐TOF multitarget approach

Journal of Medical Virology(2021)10.1002/jmv.27510

N/A

0DataRank · unranked

15 citations

Radhika Banu, Ana S. Gonzalez‐Reiche, Adriana van de Guchte, Zenab Khan, Paras Shrestha +21 more

Modified methicillin-resistant Staphylococcus aureus detected in neonatal intensive care patients

Journal of Antimicrobial Chemotherapy(2021)10.1093/jac/dkab266

N/A

0DataRank · unranked

6 citations

Bremy Alburquerque, Marilyn Chung, Adriana van de Guchte, Mitchell J. Sullivan, Ajay Obla +9 more

Respiratory Tract Explant Infection Dynamics of Influenza A Virus in California Sea Lions, Northern Elephant Seals, and Rhesus Macaques

Journal of Virology(2021)10.1128/jvi.00403-21

N/A

0DataRank · unranked

9 citations

Magdalena Plancarte, Erin E. Ball, Christopher M. Weiss, Omar Gonzáles-Viera, Karen M. Holcomb +14 more

Immunological and Genetic Investigation of SARS-CoV-2 Reinfection in an Otherwise Healthy, Young Marine Recruit

Pathogens(2021)10.3390/pathogens10121589

N/A

0DataRank · unranked

1 citations

Catherine Arnold, Bishwo N. Adhikari, Logan J. Voegtly, Lindsay Glang, Gregory K. Rice +12 more

Reduced neutralizing activity of post-SARS-CoV-2 vaccination serum against variants B.1.617.2, B.1.351, B.1.1.7+E484K and a sub-variant of C.37

medRxiv(2021)10.1101/2021.07.21.21260961

N/A

0DataRank · unranked

18 citations

Hala Alshammary, Gagandeep Singh, Ariel Raskin, Fatima Amanat, Angela A. Amoako +36 more

Fatal breakthrough infection after anti-BCMA CAR-T therapy highlights suboptimal immune response to SARS-CoV-2 vaccination in myeloma patients

medRxiv(2021)10.1101/2021.05.15.21256814

N/A

0DataRank · unranked

5 citations

Oliver Van Oekelen, Bhaskar Upadhyaya, Sarita Agte, Katerina Kappes, Katherine F. Beach +29 more

Robust clinical detection of SARS-CoV-2 variants by RT-PCR/MALDI-TOF multi-target approach

medRxiv(2021)10.1101/2021.09.09.21263348

N/A

0DataRank · unranked

4 citations

Radhika Banu, Ana S. Gonzalez‐Reiche, Adriana van de Guchte, Zenab Khan, Paras Shrestha +21 more

Before the Surge: Molecular Evidence of SARS-CoV-2 in New York City Prior to the First Report

medRxiv(2021)10.1101/2021.02.08.21251303

N/A

0DataRank · unranked

2 citations

Ana S. Gonzalez‐Reiche, Hala Alshammary, Shelcie Fabre, Zenab Khan, Adriana van de Guchte +21 more

Modified Oxacillin Resistant Staphylococcus aureus detected in neonatal intensive care patients

medRxiv(2021)10.1101/2021.03.04.21251785

N/A

0DataRank · unranked

1 citations

Bremy Alburquerque, Adriana van de Guchte, Mitchell J. Sullivan, Ajay Obla, José Polanco +9 more

Intrahost-diversity of influenza A virus in upper and lower respiratory tract derived samples from a college community

medRxiv(2021)10.1101/2021.10.27.21265424

N/A

0DataRank · unranked

1 citations

P. Jacob Bueno de Mesquita, Yunxi Liu, Roger Wang, Tian Rui Liu, Josie Garza +10 more

SARS-CoV-2 Omicron virus causes attenuated disease in mice and hamsters

Nature(2022)10.1038/s41586-022-04441-6

N/A

0DataRank · unranked

699 citations

Shun Iida, Kiyoko Iwatsuki‐Horimoto, Tadashi Maemura, Maki Kiso, Suzanne M. Scheaffer +77 more

Efficacy of Antibodies and Antiviral Drugs against Omicron BA.2.12.1, BA.4, and BA.5 Subvariants

New England Journal of Medicine(2022)10.1056/nejmc2207519

N/A

0DataRank · unranked

323 citations

Seiya Yamayoshi, Viviana Simon, Harm van Bakel, Emilia Mia Sordillo, Andrew Pekosz +11 more

Antibodies targeting the neuraminidase active site inhibit influenza H3N2 viruses with an S245N glycosylation site

Nature Communications(2022)10.1038/s41467-022-35586-7

N/A

0DataRank · unranked

26 citations

Meagan McMahon, Hannah L. Turner, Xueyong Zhu, Hongquan Wan, Juan Manuel Carreño +11 more

Discovery and intranasal administration of a SARS-CoV-2 broadly acting neutralizing antibody with activity against multiple Omicron subvariants

Med(2022)10.1016/j.medj.2022.08.002

N/A

0DataRank · unranked

23 citations

Thomas Kraus, Heyue Zhou, Yanliang Zhang, Namir Shaabani, Soner Yildiz +44 more

Protection Associated with Previous SARS-CoV-2 Infection in Nicaragua

New England Journal of Medicine(2022)10.1056/nejmc2203985

N/A

0DataRank · unranked

21 citations

Ángel Balmaseda, Saira Saborío, Sergio Ojeda, Carlos Barilla, Nery Sánchez +9 more

Pre-infection antiviral innate immunity contributes to sex differences in SARS-CoV-2 infection

Cell Systems(2022)10.1016/j.cels.2022.10.005

N/A

0DataRank · unranked

21 citations

Zijun Zhang, Irene Ramos, Venugopalan D. Nair, Alessandra Soares‐Schanoski, Yongchao Ge +27 more

Novel Epitopes of the Influenza Virus N1 Neuraminidase Targeted by Human Monoclonal Antibodies

Journal of Virology(2022)10.1128/jvi.00332-22

N/A

0DataRank · unranked

17 citations

Kaori Sano, Meagan McMahon, Juan Manuel Carreño, Christina Capuano, Kaijun Jiang +5 more

Transcriptome signatures preceding the induction of anti-stalk antibodies elicited after universal influenza vaccination

npj Vaccines(2022)10.1038/s41541-022-00583-w

N/A

0DataRank · unranked

17 citations

Ana S. Gonzalez‐Reiche, Daniel Stadlbauer, Mary Anne S. Amper, Venugopalan D. Nair, Chiara Mariottini +6 more

tRNA abundance, modification and fragmentation in nasopharyngeal swabs as biomarkers for COVID-19 severity

Frontiers in Cell and Developmental Biology(2022)10.3389/fcell.2022.999351

N/A

0DataRank · unranked

15 citations

Hala Alshammary, Christopher Watkins, Sihao Huang, Ana Gonzales-Reiche, Emilia Mia Sordillo +6 more

Phylogenetic analysis and comparative genomics of SARS-CoV-2 from survivor and non-survivor COVID-19 patients in Cordoba, Argentina

BMC Genomics(2022)10.1186/s12864-022-08756-6

N/A

0DataRank · unranked

6 citations

Ana S. Gonzalez‐Reiche, Viviana Ré, Gonzalo Castro, María Belén Pisano, Paola Sicilia +14 more

SARS-CoV-2 Outbreak Dynamics in an Isolated US Military Recruit Training Center With Rigorous Prevention Measures

Epidemiology(2022)10.1097/ede.0000000000001523

N/A

0DataRank · unranked

16 citations

Rachel Sealfon, Sang Woo Park, Gregory R. Smith, Chad K. Porter, Ana S. Gonzalez‐Reiche +38 more

Everybody nose: molecular and clinical characteristics of nasal colonization during active methicillin-resistant Staphylococcus aureus bloodstream infection

BMC Infectious Diseases(2022)10.1186/s12879-022-07371-w

N/A

0DataRank · unranked

8 citations

Adriana van de Guchte, Amy C. Dupper, Ana Berbel Caban, Devika Nadkarni, Lindsey Fox +16 more

Hotspots for SARS‐CoV‐2 Omicron variant spread: Lessons from New York City

Journal of Medical Virology(2022)10.1002/jmv.27691

N/A

0DataRank · unranked

9 citations

Sergio Castañeda, Nathalia Ballesteros, Marina Muñoz, Matthew M. Hernandez, Radhika Banu +10 more

A Robust, Highly Multiplexed Mass Spectrometry Assay to Identify SARS-CoV-2 Variants

Microbiology Spectrum(2022)10.1128/spectrum.01736-22

N/A

0DataRank · unranked

6 citations

Radhika Banu, Paras Shrestha, Ana S. Gonzalez‐Reiche, Adriana van de Guchte, Keith Farrugia +30 more

Murine Broadly Reactive Antineuraminidase Monoclonal Antibodies Protect Mice from Recent Influenza B Virus Isolates and Partially Inhibit Virus Transmission in the Guinea Pig Model

mSphere(2022)10.1128/msphere.00927-21

N/A

0DataRank · unranked

5 citations

Veronika Chromikova, George O’Dell, Emilia Mia Sordillo, Viviana Simon, Harm van Bakel +3 more

RT-PCR/MALDI-TOF Diagnostic Target Performance Reflects Circulating SARS-CoV-2 Variant Diversity in New York City

Journal of Molecular Diagnostics(2022)10.1016/j.jmoldx.2022.04.003

N/A

0DataRank · unranked

4 citations

Radhika Banu, Ana S. Gonzalez‐Reiche, Brandon Gray, Paras Shrestha, Liyong Cao +15 more

Mapping SARS-CoV-2 antigenic relationships and serological responses

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.28.477987

N/A

0DataRank · unranked

67 citations

Barbara Mühlemann, Xiaoying Shen, Sina Türeli, Eric B. LeGresley, Antonia Netzl +27 more

Outbreak of Highly Pathogenic Avian Influenza H5N1 in New England Seals

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.29.501155

N/A

0DataRank · unranked

35 citations

Kaitlin Sawatzki, Nichola J. Hill, Alexa Foss, Jonathon J. Stone, Lynda Doughty +20 more

SARS-CoV-2 variants in the making: Sequential intrahost evolution and forward transmissions in the context of persistent infections

medRxiv(2022)10.1101/2022.05.25.22275533

N/A

0DataRank · unranked

13 citations

Hala Alshammary, Sarah Schaefer, Gopi Patel, José Polanco, Juan Manuel Carreño +24 more

Phenotypes of disease severity in a cohort of hospitalized COVID-19 patients: results from the IMPACC study

medRxiv(2022)10.1101/2022.07.02.22273396

N/A

0DataRank · unranked

10 citations

Joanna Schaenman, Naresh Doni Jayavelu, Carly E. Milliren, Carolyn S. Calfee, Charles B. Cairns +40 more

Discovery of a SARS-CoV-2 Broadly-Acting Neutralizing Antibody with Activity against Omicron and Omicron + R346K Variants

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.19.476998

N/A

0DataRank · unranked

8 citations

Thomas Kraus, Heyue Zhou, Yanliang Zhang, Namir Shaabani, Soner Yildiz +43 more

Human influenza A virus H1N1 in marine mammals in California, 2019

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.04.515242

N/A

0DataRank · unranked

3 citations

Ganna Kovalenko, Julie Baldassano, Ana L. Ramírez, Selina Carrillo, Pádraig J. Duignan +6 more

A robust, highly multiplexed mass spectrometry assay to identify SARS-CoV-2 variants

medRxiv(2022)10.1101/2022.05.28.22275691

N/A

0DataRank · unranked

0 citations

Radhika Banu, Paras Shrestha, Ana S. Gonzalez‐Reiche, Adriana van de Guchte, Keith Farrugia +17 more

Highly Pathogenic Avian Influenza A(H5N1) Virus Outbreak in New England Seals, United States

Emerging infectious diseases(2023)10.3201/eid2904.221538

N/A

0DataRank · unranked

257 citations

Kaitlin Sawatzki, Nichola J. Hill, Alexa Foss, Jonathon J. Stone, Lynda Doughty +20 more

Mapping SARS-CoV-2 antigenic relationships and serological responses

Science(2023)10.1126/science.adj0070

N/A

0DataRank · unranked

135 citations

Barbara Mühlemann, Xiaoying Shen, Sina Türeli, Eric B. LeGresley, Antonia Netzl +27 more

Mpox vaccine and infection-driven human immune signatures: an immunological analysis of an observational study

The Lancet Infectious Diseases(2023)10.1016/s1473-3099(23)00352-3

N/A

0DataRank · unranked

109 citations

Nathaniel I. Bloom, Gianna Y. Cai, Jordan J. Clark, Alison Tarke, Maria C Bermúdez-González +36 more

Sequential intrahost evolution and onward transmission of SARS-CoV-2 variants

Nature Communications(2023)10.1038/s41467-023-38867-x

N/A

0DataRank · unranked

99 citations

Hala Alshammary, Sarah Schaefer, Gopi Patel, José Polanco, Juan Manuel Carreño +38 more

Impact of SARS-CoV-2 ORF6 and its variant polymorphisms on host responses and viral pathogenesis

Cell Host & Microbe(2023)10.1016/j.chom.2023.08.003

N/A

0DataRank · unranked

77 citations

Anastasija Čupić, Chengjin Ye, Soner Yildiz, Mehdi Bouhaddou, Nicholas A. Crossland +35 more

MRSA lineage USA300 isolated from bloodstream infections exhibit altered virulence regulation

Cell Host & Microbe(2023)10.1016/j.chom.2022.12.003

N/A

0DataRank · unranked

43 citations

Mitchell J. Sullivan, Bremy Alburquerque, Daiane Boff, Adriana van de Guchte, Marilyn Chung +12 more

The impact of S2 mutations on Omicron SARS-CoV-2 cell surface expression and fusogenicity

Emerging Microbes & Infections(2023)10.1080/22221751.2023.2297553

N/A

0DataRank · unranked

16 citations

Manon Laporte, S. Richard Turner, Umut Karakus, Ana S. Gonzalez‐Reiche, Adriana van de Guchte +7 more

Phylogenetic landscape of Monkeypox Virus (MPV) during the early outbreak in New York City, 2022

Emerging Microbes & Infections(2023)10.1080/22221751.2023.2192830

N/A

0DataRank · unranked

25 citations

Susana Guerra, Marina Muñoz, Nicolás Luna, Keith Farrugia, Adriana van de Guchte +21 more

Capsular Polysaccharide Is Essential for the Virulence of the Antimicrobial-Resistant Pathogen Enterobacter hormaechei

mBio(2023)10.1128/mbio.02590-22

N/A

0DataRank · unranked

23 citations

Andrew I. Perault, Sabrina I. Giacometti, Alexis G. Sommerfield, Ashley Dumont, Keenan A. Lacey +15 more

SarS Is a Repressor of Staphylococcus aureus Bicomponent Pore-Forming Leukocidins

Infection and Immunity(2023)10.1128/iai.00532-22

N/A

0DataRank · unranked

13 citations

Sophie Dyzenhaus, Juliana K. Ilmain, Mitchell J. Sullivan, Harm van Bakel, Victor J. Torres +1 more

Cellular mechanisms associated with sub-optimal immune responses to SARS-CoV-2 bivalent booster vaccination in patients with Multiple Myeloma

EBioMedicine(2023)10.1016/j.ebiom.2023.104886

N/A

0DataRank · unranked

11 citations

Morgan van Kesteren, Ariel Kogan Zajdman, Komal Srivastava, Christian Cognigni, Jacob Mischka +43 more

Generation of a high yield vaccine backbone for influenza B virus in embryonated chicken eggs

npj Vaccines(2023)10.1038/s41541-023-00603-3

N/A

0DataRank · unranked

10 citations

Madhusudan Rajendran, Divya Kriti, Andrew P. Kurland, Jeffrey R. Johnson, Harm van Bakel +4 more

Genome-Wide Characterization of Light-Regulated Gene Expression in Botrytis cinerea Reveals Underlying Complex Photobiology

International Journal of Molecular Sciences(2023)10.3390/ijms24108705

N/A

0DataRank · unranked

9 citations

Consuelo Olivares-Yáñez, Harm van Bakel, Luis Larrondo, Paulo Canessa, Gabriel Pérez-Lara

Human influenza A virus H1N1 in marine mammals in California, 2019

PLoS ONE(2023)10.1371/journal.pone.0283049

N/A

0DataRank · unranked

8 citations

Ganna Kovalenko, Julie Baldassano, Ana L. Ramírez, Selina Carrillo, Pádraig J. Duignan +6 more

Continued Circulation of Highly Pathogenic H5 Influenza Viruses in Vietnamese Live Bird Markets in 2018–2021

Viruses(2023)10.3390/v15071596

N/A

0DataRank · unranked

5 citations

Lavanya Babujee, Victoria L. Browning, Robert Presler, David Pattinson, Hang Le Khanh Nguyen +6 more

Tracking the emergence of antigenic variants in influenza A virus epidemics in Brazil

Virus Evolution(2023)10.1093/ve/vead027

N/A

0DataRank · unranked

7 citations

Katherine Johnson, Timothy Song, Tatiana Schäffer Gregianini, Baccin Tatiana G., Guojun Wang +7 more

Highly Pathogenic H5 Influenza Viruses Isolated between 2016 and 2017 in Vietnamese Live Bird Markets

Viruses(2023)10.3390/v15051093

N/A

0DataRank · unranked

5 citations

Gongxun Zhong, Shufang Fan, Erin M. Plisch, Robert Presler, Chunyang Gu +9 more

Methicillin-resistant Staphylococcus aureus bacteremia with elevated vancomycin minimum inhibitory concentrations

Antimicrobial Stewardship & Healthcare Epidemiology(2023)10.1017/ash.2023.163

N/A

0DataRank · unranked

3 citations

Amy C. Dupper, Kieran Chacko, Bremy Alburquerque, Devika Nadkarni, Ana Berbel Caban +6 more

Clinical, microbiological and genomic characterization of Gram-negative bacteria with dual carbapenemases as identified by rapid molecular testing

JAC-Antimicrobial Resistance(2023)10.1093/jacamr/dlad137

N/A

0DataRank · unranked

3 citations

Bremy Alburquerque, Marilyn Chung, Shelcie Fabre, Mitchell J. Sullivan, Michael D. Nowak +5 more

US National Institutes of Health Prioritization of SARS-CoV-2 Variants

Emerging infectious diseases(2023)10.3201/eid2905.221646

N/A

0DataRank · unranked

3 citations

Arghavan Alisoltani, Debbie Bratt, Liel Cohen-Lavi, Bethany L. Dearlove, Christian Drosten +29 more

Integrated longitudinal multi-omics study identifies immune programs associated with COVID-19 severity and mortality in 1152 hospitalized participants

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.03.565292

N/A

0DataRank · unranked

5 citations

Cole Maguire, Ravi K. Patel, Pramod Shinde, Anna Konstorum, Casey P. Shannon +40 more

Bivalent COVID-19 booster vaccines induce cross-reactive but not BA.5-specific antibodies in polyclonal serum

medRxiv(2023)10.1101/2023.04.12.23288362

N/A

0DataRank · unranked

2 citations

Gagandeep Singh, Anass Abbad, Temima Yellin, Komal Srivastava, Charles Gleason +5 more

SARS-CoV-2 serosurvey across multiple waves of the COVID-19 pandemic in New York City between 2020-2023

medRxiv(2023)10.1101/2023.12.18.23300131

N/A

0DataRank · unranked

2 citations

Abram L. Wagner, Brian Monahan, Daniel Floda, Ana S. Gonzalez‐Reiche, Johnstone Tcheou +14 more

SARS-CoV-2-infection- and vaccine-induced antibody responses are long lasting with an initial waning phase followed by a stabilization phase

Immunity(2024)10.1016/j.immuni.2024.01.017

N/A

0DataRank · unranked

144 citations

Juan Manuel Carreño, Charles Gleason, Brian Monahan, Gagandeep Singh, Anass Abbad +48 more

Features of acute COVID-19 associated with post-acute sequelae of SARS-CoV-2 phenotypes: results from the IMPACC study

Nature Communications(2024)10.1038/s41467-023-44090-5

N/A

0DataRank · unranked

60 citations

Naresh Doni Jayavelu, Shanshan Liu, Esther Melamed, Carly E. Milliren, Jingjing Qi +95 more

IgM N-glycosylation correlates with COVID-19 severity and rate of complement deposition

Nature Communications(2024)10.1038/s41467-023-44211-0

N/A

0DataRank · unranked

28 citations

Kyra Woloszczuk, Jintong Hou, Jennifer Connors, Gina Cusimano, Matthew R. Bell +94 more

Host-microbe multiomic profiling reveals age-dependent immune dysregulation associated with COVID-19 immunopathology

Science Translational Medicine(2024)10.1126/scitranslmed.adj5154

N/A

0DataRank · unranked

25 citations

Alexandra Tsitsiklis, Cole Maguire, Elias K. Haddad, Patrice M. Becker, Seunghee Kim‐Schulze +95 more

SARS-CoV-2 serosurvey across multiple waves of the COVID-19 pandemic in New York City between 2020–2023

Nature Communications(2024)10.1038/s41467-024-50052-2

N/A

0DataRank · unranked

17 citations

Abram L. Wagner, Brian Monahan, Gagandeep Singh, Daniel Floda, Ana S. Gonzalez‐Reiche +27 more

Polymicrobial methicillin-resistant Staphylococcus aureus bloodstream infections

Microbiology Spectrum(2024)10.1128/spectrum.01081-24

N/A

0DataRank · unranked

8 citations

Emi Hayashi, Michelle Evans, Harm van Bakel, Bremy Alburquerque, Amy C. Dupper +3 more

Prophage-encoded methyltransferase drives adaptation of community-acquired methicillin-resistant Staphylococcus aureus

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.17.589803

N/A

0DataRank · unranked

3 citations

Magdalena Podkowik, Rebecca Tierce, Irnov Irnov, Gregory Putzel, Nora M. Samhadaneh +14 more

Integrated transcriptomic analysis of human induced pluripotent stem cell-derived osteogenic differentiation reveals a regulatory role of KLF16

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.11.579844

N/A

0DataRank · unranked

0 citations

Meng Ma, Xianxiao Zhou, Divya Kriti, Ninette Cohen, Sunita L. D’Souza +13 more

Cross-species and mammal-to-mammal transmission of clade 2.3.4.4b highly pathogenic avian influenza A/H5N1 with PB2 adaptations

Nature Communications(2025)10.1038/s41467-025-57338-z

N/A

0DataRank · unranked

60 citations

Martha I. Nelson, Naomi Ariyama, Carolina Aguayo, Leonardo I. Almonacid, Ana S. Gonzalez‐Reiche +22 more

Mapping of human monoclonal antibody responses to XBB.1.5 COVID-19 monovalent vaccines: a B cell analysis

The Lancet Microbe(2025)10.1016/j.lanmic.2025.101103

N/A

0DataRank · unranked

7 citations

Jordan J Clark, Hallie Cohn, Deepika Jaiswal, Bailey Bozarth, Vishal Rao +29 more

Prophage-encoded methyltransferase drives adaptation of community-acquired methicillin-resistant Staphylococcus aureus

Journal of Clinical Investigation(2025)10.1172/jci177872

N/A

0DataRank · unranked

5 citations

Magdalena Podkowik, Rebecca Tierce, Irnov Irnov, Gregory Putzel, Nora M. Samhadaneh +14 more

The pandemic gap of respiratory viruses during the COVID-19 pandemic

mBio(2025)10.1128/mbio.03376-25

N/A

0DataRank · unranked

3 citations

Daniel Floda, Charles Gleason, Ana S. Gonzalez‐Reiche, Alberto Paniz‐Mondolfi, Emilia Mia Sordillo +3 more

Differential regulation of coronal and lambdoid suture patency by PTHLH and HHIP activity in mice

Development(2025)10.1242/dev.204875

N/A

0DataRank · unranked

1 citations

Susan M. Motch Perrine, Qingyang Li, Joan T. Richtsmeier, Ethylin Wang Jabs, Harm van Bakel +2 more

Antibody responses to SARS-CoV-2 variants LP.8.1, LF.7.1, NB.1.8.1, XFG and BA.3.2 following KP.2 monovalent mRNA vaccination

medRxiv(2025)10.1101/2025.08.24.25333689

N/A

0DataRank · unranked

6 citations

Brian Lerman, Jordan Ehrenhaus, Brian Monahan, Gagandeep Singh, Adria Wilson +13 more

SpikeID: Rapid and unbiased identification of SARS-CoV-2 variants by spike sequencing

Journal of Clinical Virology(2025)10.1016/j.jcv.2025.105845

N/A

0DataRank · unranked

0 citations

Zain Khalil, Adriana van de Guchte, Bremy Alburquerque, Daniel Floda, Komal Srivastava +8 more

Effect of Omicron BA.1-based compared to prototype booster mRNA vaccination on incidence of COVID-19 in the COVAIL trial

Vaccine(2025)10.1016/j.vaccine.2025.127718

N/A

0DataRank · unranked

0 citations

Daniel S. Graciaa, Bo Zhang, Nadine Rouphael, Angela R Branche, Thomas Martin +13 more

Repeated cross-sectional sero-monitoring of SARS-CoV-2 in New York City

Nature(2020)10.1038/s41586-020-2912-6

N/A

0DataRank · unranked

157 citations

Jessica Tan, Kaijun Jiang, Matthew M. Hernandez, Shelcie Fabre, Fatima Amanat +12 more

Introductions and early spread of SARS-CoV-2 in the New York City area

Science(2020)10.1126/science.abc1917

N/A

0DataRank · unranked

453 citations

Matthew M. Hernandez, Mitchell J. Sullivan, Brianne Ciferri, Hala Alshammary, Ajay Obla +30 more

Shedding of Viable SARS-CoV-2 after Immunosuppressive Therapy for Cancer

New England Journal of Medicine(2020)10.1056/nejmc2031670

N/A

0DataRank · unranked

437 citations

Ana S. Gonzalez‐Reiche, Sadaf Aslam, Adriana van de Guchte, Zenab Khan, Ajay Obla +12 more

SARS-CoV-2 Transmission among Marine Recruits during Quarantine

New England Journal of Medicine(2020)10.1056/nejmoa2029717

N/A

0DataRank · unranked

118 citations

Irene Ramos, Ajay Obla, Carl Goforth, Dawn L. Weir, Yongchao Ge +36 more

A household case evidences shorter shedding of SARS-CoV-2 in naturally infected cats compared to their human owners

Emerging Microbes & Infections(2020)10.1080/22221751.2020.1863132

N/A

0DataRank · unranked

104 citations

Bárbara Brito, Belén Agüero, Felipe Berríos, Valentina Valdés, Alberto Artamendi Gutiérrez +17 more

Integrated Transcriptome and Network Analysis Reveals Spatiotemporal Dynamics of Calvarial Suturogenesis

Cell Reports(2020)10.1016/j.celrep.2020.107871

N/A

0DataRank · unranked

70 citations

Ana S. Gonzalez‐Reiche, Na Lü, Xianxiao Zhou, Joshua Rivera, Divya Kriti +9 more

Real-Time Investigation of a Large Nosocomial Influenza A Outbreak Informed by Genomic Epidemiology

Clinical Infectious Diseases(2020)10.1093/cid/ciaa1781

N/A

0DataRank · unranked

23 citations

Jordan Ehni, Ana S. Gonzalez‐Reiche, Juan Manuel Carreño, Elena Hirsch, Jessica Tan +22 more

PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks

Genome Medicine(2020)10.1186/s13073-020-00798-3

N/A

0DataRank · unranked

22 citations

Theodore R. Pak, Ajay Obla, Amy C. Dupper, Kieran Chacko, Lindsey Fox +14 more

Hybrid Gene Origination Creates Human-Virus Chimeric Proteins during Infection

Cell(2020)10.1016/j.cell.2020.05.035

N/A

0DataRank · unranked

45 citations

Matthew Angel, Yixuan Ma, Elizabeth Sloan, Guojun Wang, Carles Martínez‐Romero +49 more

Introductions and early spread of SARS-CoV-2 in the New York City area

medRxiv(2020)10.1101/2020.04.08.20056929

N/A

0DataRank · unranked

85 citations

Matthew M. Hernandez, Mitchell J. Sullivan, Brianne Ciferri, Hala Alshammary, Ajay Obla +30 more

Gastrointestinal involvement attenuates COVID-19 severity and mortality

medRxiv(2020)10.1101/2020.09.07.20187666

N/A

0DataRank · unranked

43 citations

Divya Jha, Francesca Cossarini, Ana S. Gonzalez‐Reiche, Minami Tokuyama, Teresa Aydillo +38 more

SARS-CoV-2-specific IgA and limited inflammatory cytokines are present in the stool of select patients with acute COVID-19

medRxiv(2020)10.1101/2020.09.03.20183947

N/A

0DataRank · unranked

36 citations

Alice Chen-Liaw, Francesca Cossarini, Alexandra E. Livanos, Matthew P. Spindler, Tamar Plitt +20 more

Harm van Bakel

Indexed papers

Top data-sharing exemplar

Papers