Lincoln Stein

ORCID: 0000-0002-1983-4588

Also affiliated with University of Toronto, Vector Institute

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

24.3Author DataRank

Indexed papers

13in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 13 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The reactome pathway knowledgebase 2022

Nucleic Acids Research(2021)10.1093/nar/gkab1028

Top 2%

7.9DataRank

Top 2%2570 citations

Bijay Jassal, Ralf Stephan, M Orlic-Milacic, Karen Rothfels, Andrea Senff‐Ribeiro +30 more

Papers

Driven by 42 papers — median percentile 74. Top paper: “Data analysis: Create a cloud commons”.

Data analysis: Create a cloud commons

Nature(2015)10.1038/523149a

N/A

8.4DataRank · unranked

113 citations

Ola Wallerman, Fabien Calvo, Gad Getz, Natalia Koralewska, Lincoln Stein +3 more

The reactome pathway knowledgebase 2022

Nucleic Acids Research(2021)10.1093/nar/gkab1028

Top 2%

7.9DataRank

Top 2%2570 citations

Bijay Jassal, Ralf Stephan, M Orlic-Milacic, Karen Rothfels, Andrea Senff‐Ribeiro +30 more

Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt

Lecture Notes in Computer Science(2004)10.1007/978-3-540-30475-3_25

N/A

5.6DataRank · unranked

112 citations

Sean Bechhofer, Mark D D. Wilkinson, Gary S Schiltz, Damian DG Gessler, Duncan Hull +4 more

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Nature(2020)10.1038/s41586-020-1965-x

Top 5%

4.6DataRank

Top 5%668 citations

Federico Abascal, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj +1240 more

The Reactome Pathway Knowledgebase 2024

Nucleic Acids Research(2023)10.1093/nar/gkad1025

Top 5%

4.5DataRank

Top 5%1383 citations

Deidre Beavers, Patrick Conley, Chuqiao Gong, Marc Gillespie, Johannes Griss +19 more

Sex differences in oncogenic mutational processes

Nature Communications(2020)10.1038/s41467-020-17359-2

N/A

4.2DataRank · unranked

128 citations

Stephenie D. Prokopec, Ren Sun, Fouad Yousif, Nathaniel Schmitz, Fátima Al‐Shahrour +90 more

Gramene 2021: harnessing the power of comparative genomics and pathways for plant research

Nucleic Acids Research(2020)10.1093/nar/gkaa979

Top 8%

2.6DataRank

Top 8%133 citations

Sushma Naithani, Parul Gupta, Andrew Olson, Sharon Wei, Justin Preece +24 more

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

Science(2010)10.1126/science.1198374

Top 9%

2.4DataRank

Top 9%1089 citations

Sushmita Roy, Jason Ernst, Peter V. Kharchenko, Yanxiao Zhang, Richard S. Sandstrom +172 more

Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/237313

N/A

1.7DataRank · unranked

47 citations

B. F. Francis Ouellette, Federico Abascal, Grace Tiao, Henrik Hornshøj, Nobuyoshi Hiraoka +64 more

Using the Reactome Database

Current Protocols(2023)10.1002/cpz1.722

Top 14%

1.4DataRank

Top 14%57 citations

M Orlic-Milacic, Lisa Matthews, Robin Haw, Cristoffer Sevilla, Marc Gillespie +20 more

The Bioperl Toolkit: Perl Modules for the Life Sciences

Genome Research(2002)10.1101/gr.361602

N/A

1.1DataRank · unranked

1704 citations

David Block, Kris Boulez, Steven E. Brenner, Stephen A. Chervitz, Chris Dagdigian +21 more

A Comprehensive Map of Insulator Elements for the Drosophila Genome

PLoS Genetics(2010)10.1371/journal.pgen.1000814

N/A

0.877DataRank · unranked

344 citations

Christopher D. Brown, Parantu K. Shah, Yanxiao Zhang, Carolyn A. Morrison, Philipp Kapranov +11 more

Plant Ontology (PO): a controlled vocabulary of plant structures and growth stages

Comparative and Functional Genomics(2005)10.1002/cfg.496

Top 26%

0.774DataRank

Top 26%173 citations

Shulamit Avraham, Katica Ilic, Elizabeth A Kellogg, Susan McCouch, Anuradha Pujar +10 more

Landscape of somatic single nucleotide variants and indels in colorectal cancer and impact on survival

Nature Communications(2020)10.1038/s41467-020-17386-z

N/A

0.683DataRank · unranked

94 citations

Tabitha A. Harrison, Amanda I. Phipps, Robert S. Steinfelder, Quang M. Trinh, Conghui Qu +71 more

The Reactome Knowledgebase 2026

Nucleic Acids Research(2025)10.1093/nar/gkaf1223

Top 33%

0.590DataRank

Top 33%32 citations

Chuqiao Gong, Pierre Sinquin, Cristoffer Sevilla, Deidre Beavers, Alexander Grentner +20 more

The Canadian VirusSeq Data Portal and Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology

Microbial Genomics(2024)10.1099/mgen.0.001293

Top 61%

0.241DataRank

Top 61%4 citations

Baofeng Jia, Carmen Lía Murall, Raphaël Poujol, Muhammad Zohaib Anwar, Nithu Sara John +62 more

Updates to the Alliance of Genome Resources Central Infrastructure Alliance of Genome Resources Consortium

10.1101/2023.11.20.567935

Top 65%

0.208DataRank

Top 65%3 citations

Anna V. Anagnostopoulos, Giulia Antonazzo, Valerio Arnaboldi, Helen Attrill, Andrés Becerra +96 more

FAIR Header Reference genome: a TRUSTworthy standard

Briefings in Bioinformatics(2024)10.1093/bib/bbae122

N/A

0.165DataRank · unranked

2 citations

Mark D D. Wilkinson, Christopher J. Mungall, Scott Cain, Stephen Richards, Paul W. Sternberg +8 more

Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Communications Biology(2022)10.1038/s42003-022-03769-z

N/A

0.165DataRank · unranked

2 citations

Lars Feuerbach, Chen Hong, David Mas-Ponte, Randi Istrup Pedersen, PCAWG Drivers and Functional Interpretation Group +1255 more

Unlocking the secrets of the genome

UNC Libraries(2020)10.17615/aw2c-np04

N/A

0.154DataRank · unranked

1 citations

Laura A. L. Dillon, Grigorios Georgolopoulos, Kristin C. Gunsalus, Steven Henikoff, Gary H. Karpen +10 more

React-to-Me Expert Evaluation Dataset

Zenodo (CERN European Organization for Nuclear Research)(2025)10.5281/zenodo.17602575

Top 100%

0DataRank

Top 100%0 citations

Fatemeh Almodaresi, Gregory F. J. Hogue, Adam Wright, M Orlic-Milacic, Nancy T. Li +3 more

React-to-Me Expert Evaluation Dataset

Zenodo (CERN European Organization for Nuclear Research)(2025)10.5281/zenodo.17602574

Top 100%

0DataRank

Top 100%0 citations

Fatemeh Almodaresi, Gregory F. J. Hogue, Adam Wright, M Orlic-Milacic, Nancy T. Li +3 more

Setting up JBrowse 2 for Visualizing Genome Synteny

Current Protocols(2025)10.1002/cpz1.70236

N/A

0DataRank · unranked

0 citations

Garrett Stevens, Scott Cain, Lincoln Stein, Ian Holmes, Colin Diesh

Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower

Nature Communications(2022)10.1038/s41467-022-32343-8

N/A

0DataRank · unranked

0 citations

PCAWG Drivers and Functional Interpretation Working Group, Federico Abascal, Samirkumar B. Amin, Pratiti Bandopadhayay, Rameen Beroukhim +1242 more

Metabolic Regulation of the Epigenome Drives Lethal Infantile Ependymoma

Cell(2020)10.1016/j.cell.2020.04.047

N/A

0DataRank · unranked

141 citations

Sachin Kumar, Leo J.Y. Kim, Florence M.G. Cavalli, David Przelicki, John Wojcik +61 more

JBrowse Connect: A server API to connect JBrowse instances and users

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007261

N/A

0DataRank · unranked

4 citations

Robert Buels, Lincoln Stein, Taner Z. Sen, Ian Holmes, Eric Yao

The transcriptional landscape of Shh medulloblastoma

Nature Communications(2021)10.1038/s41467-021-21883-0

N/A

0DataRank · unranked

97 citations

Hamza Farooq, Florence M.G. Cavalli, A. Sorana Morrissy, Michelle Ly, Liam D. Hendrikse +94 more

The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols

Nucleic Acids Research(2021)10.1093/nar/gkab346

N/A

0DataRank · unranked

38 citations

Louise Cabansay, Andrew Duncan, Gary Luu, Gregory Hogue, Charles Overbeck +13 more

JBrowseR: an R interface to the JBrowse 2 genome browser

Bioinformatics(2021)10.1093/bioinformatics/btab459

N/A

0DataRank · unranked

26 citations

Garrett Stevens, Colin Diesh, Peter Xie, Teresa De Jesus Martinez, Robert Buels +3 more

JBrowse 2: A modular genome browser with views of synteny and structural variation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.28.501447

N/A

0DataRank · unranked

31 citations

Garrett Stevens, Peter Xie, Teresa De Jesus Martinez, Elliot A. Hershberg, Angel Leung +15 more

JBrowse Jupyter: A Python interface to JBrowse 2

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.11.491552

N/A

0DataRank · unranked

4 citations

Elliot A. Hershberg, Emma Guo, Garrett Stevens, Colin Diesh, Peter Xie +7 more

Illuminating Dark Proteins using Reactome Pathways

(2022)10.3180/poster/20221027matthews

N/A

0DataRank · unranked

2 citations

Guanming Wu, Robin Haw, Timothy Brunson, Nasim Sanati, Solomon I. Shorser +5 more

JBrowse 2: a modular genome browser with views of synteny and structural variation

Genome biology(2023)10.1186/s13059-023-02914-z

N/A

0DataRank · unranked

880 citations

Garrett Stevens, Peter Xie, Teresa De Jesus Martinez, Elliot A. Hershberg, Angel Leung +15 more

JBrowse Jupyter: a Python interface to JBrowse 2

Bioinformatics(2023)10.1093/bioinformatics/btad032

N/A

0DataRank · unranked

7 citations

Elliot A. Hershberg, Emma Guo, Garrett Stevens, Colin Diesh, Peter Xie +7 more

Illuminate the Functions of Dark Proteins Using the Reactome‐IDG Web Portal

Current Protocols(2023)10.1002/cpz1.845

N/A

0DataRank · unranked

3 citations

Timothy Brunson, Nasim Sanati, Lisa Matthews, Robin Haw, Solomon I. Shorser +9 more

ChatGPT usage in the Reactome curation process

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.08.566195

N/A

0DataRank · unranked

13 citations

Lisa Matthews, Bruce May, Veronica Shamovsky, M Orlic-Milacic, Karen Rothfels +9 more

Illuminating Dark Proteins using Reactome Pathways

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.05.543335

N/A

0DataRank · unranked

6 citations

Nasim Sanati, Lisa Matthews, Robin Haw, Deidre Beavers, Solomon I. Shorser +9 more

Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.18.562964

Top 100%

0DataRank

Top 100%0 citations

Karen Rothfels, Lisa Matthews, Adam Wright, Bijay Jassal, Veronica Shamovsky +17 more

Early rhombic lip Protogenin+ve stem cells in a human-specific neurovascular niche initiate and maintain group 3 medulloblastoma

Cell(2024)10.1016/j.cell.2024.06.011

N/A

0DataRank · unranked

33 citations

Olivier Saulnier, Chuan Chen, Parthiv Haldipur, Wilda Orisme, Alberto Delaidelli +59 more

Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes

Database(2024)10.1093/database/baae031

N/A

0DataRank · unranked

4 citations

Karen Rothfels, Lisa Matthews, Adam Wright, Bijay Jassal, Veronica Shamovsky +17 more

Setting Up the JBrowse 2 Genome Browser

Current Protocols(2024)10.1002/cpz1.1120

N/A

0DataRank · unranked

2 citations

Robert Buels, Garrett Stevens, Caroline Bridge, Scott Cain, Lincoln Stein +2 more

React-to-Me: A Conversational Interface for Interactive Exploration of the Reactome Pathway Knowledgebase

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.12.693752

N/A

0DataRank · unranked

0 citations

Fatemeh Almodaresi, Gregory Hogue, Adam Wright, M Orlic-Milacic, Nancy T. Li +3 more

Lincoln Stein

Indexed papers

Top data-sharing exemplar

Papers