Vladimir Yarov‐Yarovoy

Biochemistry, Genetics and Molecular BiologyMedicineNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 52 papers. Top paper: “An artificial intelligence accelerated virtual screening platform for drug discovery”.

An artificial intelligence accelerated virtual screening platform for drug discovery

Nature Communications(2024)10.1038/s41467-024-52061-7

N/A

2.6DataRank · unranked

210 citations

Domnița-Valeria Rusnac, Hahnbeom Park, Daniele Canzani, Hai M. Nguyen, Lance Stewart +7 more

α‐Actinin‐1 promotes activity of the L‐type Ca2+ channel Cav1.2

The EMBO Journal(2020)10.15252/embj.2019102622

N/A

0.822DataRank · unranked

32 citations

David E. Anderson, Peter H. Bartels, Madeline Nieves‐Cintrón, Andrea M. Coleman, Peter B. Henderson +9 more

Harnessing AlphaFold to reveal hERG channel conformational state secrets

eLife(2024)10.7554/elife.104901

N/A

0.406DataRank · unranked

9 citations

Pei‐Chi Yang, Vladimir Yarov‐Yarovoy, Colleen E. Clancy, Igor Vorobyov, Khoa Ngo

Elucidating molecular mechanisms of protoxin-II state-specific binding to the human NaV1.7 channel

The Journal of General Physiology(2023)10.1085/jgp.202313368

N/A

0.382DataRank · unranked

10 citations

Diego López Mateos, Yanxiao Han, Kyle C. Rouen, Surl-Hee Ahn, Heike Wulff +4 more

Toward high-resolution modeling of small molecule–ion channel interactions

Frontiers in Pharmacology(2024)10.3389/fphar.2024.1411428

N/A

0.339DataRank · unranked

8 citations

Phuong T. Nguyen, Guangfeng Zhou, Heike Wulff, Frank DiMaio, Vladimir Yarov‐Yarovoy +1 more

Structural modeling of hERG channel–drug interactions using Rosetta

Frontiers in Pharmacology(2023)10.3389/fphar.2023.1244166

N/A

0.299DataRank · unranked

5 citations

Kevin R. DeMarco, Kazuharu Furutani, Slava Bekker, Jon T. Sack, Heike Wulff +4 more

Harnessing AlphaFold to reveal hERG channel conformational state secrets

(2024)10.1101/2024.01.27.577468

N/A

0.182DataRank · unranked

2 citations

Pei‐Chi Yang, Vladimir Yarov‐Yarovoy, Colleen E. Clancy, Igor Vorobyov, Khoa Ngo

Exploring voltage-gated sodium channel conformations and protein-protein interactions using AlphaFold2

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.15.618559

N/A

0.170DataRank · unranked

2 citations

Kush Narang, Vladimir Yarov‐Yarovoy, Diego López Mateos

An unorthodox mechanism underlying voltage sensitivity of TRPV1 ion channel

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.04.894980

N/A

0DataRank · unranked

3 citations

Lizhen Xu, Bo Hyun Lee, Xian Xiao, Vladimir Yarov‐Yarovoy, Jie Zheng +1 more

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

Nature Communications(2021)10.1038/s41467-021-27222-7

N/A

0DataRank · unranked

27 citations

Sergey Lyskov, Steven M. Lewis, Jared Adolf‐Bryfogle, Rebecca F. Alford, Kyle A. Barlow +45 more

Molecular determinants of pro-arrhythmia proclivity of d- and l-sotalol via a multi-scale modeling pipeline

Journal of Molecular and Cellular Cardiology(2021)10.1016/j.yjmcc.2021.05.015

N/A

0DataRank · unranked

24 citations

Pei‐Chi Yang, Vikrant Singh, Kazuharu Furutani, John R.D. Dawson, Mao-Tsuen Jeng +10 more

Disruption of protein quality control of the human ether-à-go-go related gene K+ channel results in profound long QT syndrome

Heart Rhythm(2021)10.1016/j.hrthm.2021.10.005

N/A

0DataRank · unranked

12 citations

Lu Ren, Phung N. Thai, Seojin Park, Valeriy Timofeyev, Padmini Sirish +10 more

Toggle switch residues control allosteric transitions in bacterial adhesins by participating in a concerted repacking of the protein core

PLoS Pathogens(2021)10.1371/journal.ppat.1009440

N/A

0DataRank · unranked

16 citations

Pearl Magala, Gianluca Interlandi, Laura A. Carlucci, A.S. Ferreira Ramos, Veronika Tchesnokova +9 more

De Novo Design of Peptidic Positive Allosteric Modulators Targeting TRPV1 with Analgesic Effects

Advanced Science(2021)10.1002/advs.202101716

N/A

0DataRank · unranked

9 citations

Heng Zhang, Yunfei Wang, Xiancui Lu, Zhenye Zhao, Cheng Ma +6 more

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.04.438423

N/A

0DataRank · unranked

4 citations

Sergey Lyskov, Steven M. Lewis, Jared Adolf‐Bryfogle, Rebecca F. Alford, Kyle A. Barlow +43 more

Structural modeling of the hERG potassium channel and associated drug interactions

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.08.451699

N/A

0DataRank · unranked

1 citations

Aiyana M. Emigh, Kevin R. DeMarco, Kazuharu Furutani, Jon T. Sack, Colleen E. Clancy +3 more

Structural modeling of the hERG potassium channel and associated drug interactions

Frontiers in Pharmacology(2022)10.3389/fphar.2022.966463

N/A

0DataRank · unranked

23 citations

Aiyana M. Emigh, Kevin R. DeMarco, Kazuharu Furutani, Jon T. Sack, Colleen E. Clancy +3 more

Adenylyl cyclase isoform 1 contributes to sinoatrial node automaticity via functional microdomains

JCI Insight(2022)10.1172/jci.insight.162602

N/A

0DataRank · unranked

16 citations

Phung N. Thai, Raghavender Reddy Gopireddy, Valeriy Timofeyev, Hannah A. Ledford, Ryan L. Woltz +14 more

Structural and Functional Characterization of a Novel Scorpion Toxin that Inhibits NaV1.8 via Interactions With the DI Voltage Sensor and DII Pore Module

Frontiers in Pharmacology(2022)10.3389/fphar.2022.846992

N/A

0DataRank · unranked

7 citations

Diego López Mateos, Tarek Mohamed Abd El‐Aziz, Yucheng Xiao, Jake Kline, Hong Bao +8 more

Two mosquito odorant receptors with reciprocal specificity mediated by a single amino acid residue

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.22.485336

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0DataRank · unranked

1 citations

Pingxi Xu, B. Harris, Vladimir Yarov‐Yarovoy, Walter Soares Leal, Flávia P. Franco

Elucidation of a dynamic interplay between a beta-2 adrenergic receptor, its agonist, and stimulatory G protein

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2215916120

N/A

0DataRank · unranked

25 citations

John R.D. Dawson, Kevin R. DeMarco, Kyle C. Rouen, Slava Bekker, Vladimir Yarov‐Yarovoy +4 more

Toward Digital Twin Technology for Precision Pharmacology

JACC. Clinical electrophysiology(2023)10.1016/j.jacep.2023.10.024

N/A

0DataRank · unranked

21 citations

Mao-Tsuen Jeng, Vladimir Yarov‐Yarovoy, Luis F. Santana, Igor Vorobyov, Colleen E. Clancy +1 more

Molecular determinants of μ-conotoxin KIIIA interaction with the human voltage-gated sodium channel NaV1.7

Frontiers in Pharmacology(2023)10.3389/fphar.2023.1156855

N/A

0DataRank · unranked

7 citations

Phuong T. Nguyen, Baldomero M. Olivera, Jon T. Sack, Vladimir Yarov‐Yarovoy, Ian H. Kimball

Energetic landscape of polycystin channel gating

EMBO Reports(2023)10.15252/embr.202356783

N/A

0DataRank · unranked

5 citations

B. Harris, Megan Larmore, My C. Ta, Thuy N. Vien, Valerie Tokars +3 more

Opening of capsaicin receptor TRPV1 is stabilized equally by its four subunits

Journal of Biological Chemistry(2023)10.1016/j.jbc.2023.104828

N/A

0DataRank · unranked

4 citations

Phuong T. Nguyen, Simon Vu, Vladimir Yarov‐Yarovoy, Jie Zheng, Shisheng Li

A Novel Peptide Prevents Enterotoxin- and Inflammation-Induced Intestinal Fluid Secretion by Stimulating Sodium-Hydrogen Exchanger 3 Activity

Gastroenterology(2023)10.1053/j.gastro.2023.06.028

N/A

0DataRank · unranked

3 citations

Hannah J. Vaughan, Ruxian Lin, Rafiquel Sarker, Savannah Est‐Witte, Molee Chakraborty +8 more

TRPV1 Opening is Stabilized Equally by Its Four Subunits

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.26.525787

N/A

0DataRank · unranked

2 citations

Phuong T. Nguyen, Simon Vu, Vladimir Yarov‐Yarovoy, Jie Zheng, Shisheng Li

Elucidating Molecular Mechanisms of Protoxin-2 State-specific Binding to the Human Na V 1.7 Channel

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.27.530360

N/A

0DataRank · unranked

1 citations

Diego López Mateos, Yanxiao Han, Kyle C. Rouen, Surl-Hee Ahn, Heike Wulff +4 more

Modeling Stereospecific Drug Interactions with Beta-Adrenergic Receptors

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.01.560334

N/A

0DataRank · unranked

1 citations

Kevin R. DeMarco, Yanxiao Han, Slava Bekker, Colleen E. Clancy, Vladimir Yarov‐Yarovoy +2 more

Atomistic mechanisms of the regulation of small-conductance Ca 2+ -activated K + channel (SK2) by PIP2

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2318900121

N/A

0DataRank · unranked

11 citations

Yang Zheng, Woori Choi, Khoa Ngo, Pauline Trinh, Lu Ren +14 more

Harnessing Deep Learning Methods for Voltage-Gated Ion Channel Drug Discovery

Physiology(2024)10.1152/physiol.00029.2024

N/A

0DataRank · unranked

6 citations

B. Harris, Adriana Hernández González, Kush Narang, Vladimir Yarov‐Yarovoy, Diego López Mateos

A Kv2 inhibitor combination reveals native neuronal conductances consistent with Kv2/KvS heteromers

eLife(2024)10.7554/elife.99410

N/A

0DataRank · unranked

4 citations

Matthew James Marquis, Sooyeon Jo, B. Harris, Aman S. Aberra, Verity Cook +5 more

A Kv2 inhibitor combination reveals native neuronal conductances consistent with Kv2/KvS heteromers

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.31.578214

N/A

0DataRank · unranked

1 citations

Matthew James Marquis, Sooyeon Jo, Brandon Harris, Aman Aberra, Verity Cook +5 more

Towards high-resolution modeling of small molecule-ion channel interactions

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.02.587818

N/A

0DataRank · unranked

0 citations

Phuong T. Nguyen, Guangfeng Zhou, Heike Wulff, Frank DiMaio, Vladimir Yarov‐Yarovoy +1 more

Author response: Harnessing AlphaFold to reveal hERG channel conformational state secrets

(2024)10.7554/elife.104901.1.sa4

N/A

0DataRank · unranked

0 citations

Pei‐Chi Yang, Vladimir Yarov‐Yarovoy, Colleen E. Clancy, Igor Vorobyov, Khoa Ngo

Recent advances in the pharmacology of voltage-gated ion channels

Pharmacological Reviews(2025)10.1016/j.pharmr.2025.100090

N/A

0DataRank · unranked

13 citations

B. Harris, Ana Hernández-González, Vladimir Yarov‐Yarovoy, Heike Wulff, Diego López Mateos

Ligand Dissociation Pathways from Membrane Receptors Revealed by Weighted Ensemble Simulations

The Journal of Physical Chemistry B(2025)10.1021/acs.jpcb.5c04545

N/A

0DataRank · unranked

3 citations

Kyle C. Rouen, Vladimir Yarov‐Yarovoy, Colleen E. Clancy, Yang K. Xiang, Igor Vorobyov +2 more

Molecular simulations reveal intricate coupling between agonist-bound β-adrenergic receptors and G protein

iScience(2025)10.1016/j.isci.2024.111741

N/A

0DataRank · unranked

5 citations

John R.D. Dawson, Kevin R. DeMarco, Kyle C. Rouen, Khoa Ngo, Slava Bekker +6 more

Exploring voltage-gated sodium channel conformations and protein–protein interactions using AlphaFold2

The Journal of General Physiology(2025)10.1085/jgp.202413705

N/A

0DataRank · unranked

2 citations

Kush Narang, Vladimir Yarov‐Yarovoy, Diego López Mateos

A Kv2 inhibitor combination reveals native neuronal conductances consistent with Kv2/KvS heteromers

eLife(2025)10.7554/elife.99410.3

N/A

0DataRank · unranked

1 citations

Matthew James Marquis, Sooyeon Jo, B. Harris, Aman S. Aberra, Verity Cook +5 more

Prediction of TdP Arrhythmia Risk Through Molecular Simulations of Conformation-specific Drug Interactions with the hERG K + , Na V 1.5, and Ca V 1.2 Channels

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.25.678690

N/A

0DataRank · unranked

1 citations

Kush Narang, Yanxiao Han, David Wang, Ensley Jang, Sophia Brunkow +4 more

Harnessing AlphaFold to reveal hERG channel conformational state secrets

eLife(2025)10.7554/elife.104901.3

N/A

0DataRank · unranked

0 citations

Pei‐Chi Yang, Vladimir Yarov‐Yarovoy, Colleen E. Clancy, Igor Vorobyov, Khoa Ngo

Inhibition of Ca V 1.4 channels by Ca V 3 channel antagonists ML218 and Z944

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.30.673144

N/A

0DataRank · unranked

0 citations

Juan de la Rosa Vázquez, Adriana Hernández González, Vladimir Yarov‐Yarovoy, Amy Lee, Jinglang Sun

Directed Evolution of a Selective and Sensitive Serotonin Sensor via Machine Learning

Cell(2020)10.1016/j.cell.2020.11.040

N/A

0DataRank · unranked

185 citations

Jacob P. Keller, Michael Altermatt, Ruqiang Liang, Aya Matsui, Chunyang Dong +30 more

Inhibition of CaV1.4 channels by CaV3 channel antagonists ML218 and Z944

The Journal of General Physiology(2025)10.1085/jgp.202513879

N/A

0DataRank · unranked

0 citations

Juan de la Rosa Vázquez, Adriana Hernández-González, Vladimir Yarov‐Yarovoy, Amy Lee, Jinglang Sun

A Computational Pipeline to Predict Cardiotoxicity

Circulation Research(2020)10.1161/circresaha.119.316404

N/A

0DataRank · unranked

84 citations

Kevin R. DeMarco, Parya Aghasafari, Mao-Tsuen Jeng, John R.D. Dawson, Slava Bekker +5 more

New capsaicin analogs as molecular rulers to define the permissive conformation of the mouse TRPV1 ligand-binding pocket

eLife(2020)10.7554/elife.62039

N/A

0DataRank · unranked

21 citations

Vikrant Singh, Heike Wulff, Vladimir Yarov‐Yarovoy, Jie Zheng, Simon Vu

Different arrhythmia-associated calmodulin mutations have distinct effects on cardiac SK channel regulation

The Journal of General Physiology(2020)10.1085/jgp.202012667

N/A

0DataRank · unranked

18 citations

Seojin Park, Duncan F. Muir, Ryan L. Woltz, Lu Ren, Phuong T. Nguyen +10 more

Distinguishing Potassium Channel Resting State Conformations in Live Cells with Environment-Sensitive Fluorescence

ACS Chemical Neuroscience(2020)10.1021/acschemneuro.0c00276

N/A

0DataRank · unranked

8 citations

Parashar Thapa, Rebecka J. Sepela, Rayan Kaakati, Vladimir Yarov‐Yarovoy, Jon T. Sack +2 more

Cooperativity of K v 7.4 channels confers ultrafast electromechanical sensitivity and emergent properties in cochlear outer hair cells

Science Advances(2020)10.1126/sciadv.aba1104

N/A

0DataRank · unranked

35 citations

Jeong H. Lee, Seojin Park, Xiao-Dong Zhang, Choong‐Ryoul Sihn, Hannah A. Ledford +7 more

An Unorthodox Mechanism Underlying Voltage Sensitivity of TRPV1 Ion Channel

Advanced Science(2020)10.1002/advs.202000575

N/A

0DataRank · unranked

33 citations

Lizhen Xu, Bo Hyun Lee, Xian Xiao, Vladimir Yarov‐Yarovoy, Jie Zheng +1 more

Gating Properties of Mutant Sodium Channels and Responses to Sodium Current Inhibitors Predict Mexiletine-Sensitive Mutations of Long QT Syndrome 3

Frontiers in Pharmacology(2020)10.3389/fphar.2020.01182

N/A

0DataRank · unranked

24 citations

Ryan L. Woltz, Chengyu Wang, Lu Ren, Pei-xin He, Shandong Yu +6 more