Zhongming Zhao

The University of Texas Health Science Center

Also affiliated with The University of Texas Health Science Center at Houston

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

16.0Author DataRank

Indexed papers

17in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 17 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

Papers

Driven by 167 papers — median percentile 54. Top paper: “Pan-cancer analysis of whole genomes”.

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Nature(2020)10.1038/s41586-020-1965-x

Top 5%

4.6DataRank

Top 5%668 citations

Federico Abascal, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj +1240 more

TissGDB: tissue-specific gene database in cancer

Nucleic Acids Research(2018)10.1093/nar/gkx850

Top 7%

3.3DataRank

Top 7%135 citations

Aekyung Park, Guangchun Han, Hua Sun, Peilin Jia, Zhongming Zhao +1 more

KinaseMD: kinase mutations and drug response database

Nucleic Acids Research(2020)10.1093/nar/gkaa945

Top 10%

2.1DataRank

Top 10%79 citations

Haodong Xu, Peilin Jia, Zhongming Zhao, Ruifeng Hu

NOTCH-Induced MDSC Recruitment after oHSV Virotherapy in CNS Cancer Models Modulates Antitumor Immunotherapy

Clinical Cancer Research(2022)10.1158/1078-0432.ccr-21-2347

N/A

1.6DataRank · unranked

58 citations

Ji Young Yoo, Cole T. Lewis, Samantha Chao, Jessica Swanner, Toshihiko Shimizu +17 more

Longitudinal single cell transcriptomics reveals Krt8+ alveolar epithelial progenitors in lung regeneration

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/705244

N/A

1.5DataRank · unranked

34 citations

Lukas M. Simon, Meshal Ansari, Laura F. Mattner, Ilias Angelidis, Christoph H. Mayr +22 more

NetBCE: An Interpretable Deep Neural Network for Accurate Prediction of Linear B-Cell Epitopes

Genomics Proteomics & Bioinformatics(2022)10.1016/j.gpb.2022.11.009

Top 18%

1.1DataRank

Top 18%25 citations

Zhongming Zhao, Haodong Xu

CSEA-DB: an omnibus for human complex trait and cell type associations

Nucleic Acids Research(2020)10.1093/nar/gkaa1064

Top 20%

1.0DataRank

Top 20%31 citations

Ruifeng Hu, Astrid M. Manuel, Andi Liu, Peilin Jia, Zhongming Zhao +1 more

Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis

Nature Communications(2020)10.1038/s41467-020-17358-3

N/A

0.988DataRank · unranked

725 citations

Lukas M. Simon, Meshal Ansari, Jaymin J. Kathiriya, Ilias Angelidis, Christoph H. Mayr +25 more

Studying Tumorigenesis through Network Evolution and Somatic Mutational Perturbations in the Cancer Interactome

Molecular Biology and Evolution(2014)10.1093/molbev/msu167

N/A

0.692DataRank · unranked

100 citations

Peilin Jia, Quan Wang, Chen-Ching Lin, Wen-Hsiung Li, Zhongming Zhao +1 more

Targeting IGF2 to reprogram the tumor microenvironment for enhanced viro-immunotherapy

Neuro-Oncology(2024)10.1093/neuonc/noae105

N/A

0.652DataRank · unranked

22 citations

Jin Muk Kang, Alexandra Miller, Grace Nguyen, Minxin Huang, Ji Seon Shim +15 more

Single-cell multiomics decodes regulatory programs for mouse secondary palate development

Nature Communications(2024)10.1038/s41467-024-45199-x

N/A

0.643DataRank · unranked

23 citations

Akiko Suzuki, Chihiro Iwaya, Guangsheng Pei, Xian Chen, Hiroki Yoshioka +5 more

Drug repurposing for COVID-19 using graph neural network and harmonizing multiple evidence

Scientific Reports(2021)10.1038/s41598-021-02353-5

N/A

0.639DataRank · unranked

70 citations

Yinyin Wang, Luyao Chen, Zhongming Zhao, Sean I. Savitz, Xiaoqian Jiang +3 more

Association of CXCR6 with COVID-19 severity: delineating the host genetic factors in transcriptomic regulation

Human Genetics(2021)10.1007/s00439-021-02305-z

N/A

0.601DataRank · unranked

54 citations

Junke Wang, Hyun-Hwan Jeong, Wenhao Chen, Peilin Jia, Zhongming Zhao +1 more

Single-Cell RNA Sequencing Uncovers Paracrine Functions of the Epicardial-Derived Cells in Arrhythmogenic Cardiomyopathy

Circulation(2021)10.1161/circulationaha.120.052928

N/A

0.593DataRank · unranked

51 citations

Sirisha Cheedipudi, Leila Rouhi, Siyang Fan, Lukas M. Simon, Zhongming Zhao +4 more

Identifying candidate genes and drug targets for Alzheimer’s disease by an integrative network approach using genetic and brain region-specific proteomic data

Human Molecular Genetics(2022)10.1093/hmg/ddac124

Top 34%

0.585DataRank

Top 34%16 citations

Astrid M. Manuel, Yulin Dai, Brisa S. Fernandes, Nitesh Enduru, Peilin Jia +2 more

Whole-Genome Sequencing Analysis of Human Metabolome in Multi-Ethnic Populations

Nature Communications(2023)10.1038/s41467-023-38800-2

N/A

0.584DataRank · unranked

48 citations

Michael R. Brown, Taryn Alkis, Astrid M. Manuel, Xihao Li, Usman A. Tahir +31 more

Patient-derived iPSCs link elevated mitochondrial respiratory complex I function to osteosarcoma in Rothmund-Thomson syndrome

PLoS Genetics(2021)10.1371/journal.pgen.1009971

N/A

0.526DataRank · unranked

17 citations

An Xu, Dandan Zhu, Mo-Fan Huang, Linchao Lu, Mo Liu +24 more

White matter deficits in cocaine use disorder: convergent evidence from in vivo diffusion tensor imaging and ex vivo proteomic analysis

Translational Psychiatry(2021)10.1038/s41398-021-01367-x

N/A

0.505DataRank · unranked

28 citations

Thiago Wendt Viola, Gabriel R. Fries, Bruno Kluwe‐Schiavon, Leonardo Melo Rothmann, Renata B. Cupertino +11 more

The HSP90-MYC-CDK9 network drives therapeutic resistance in mantle cell lymphoma

Experimental Hematology and Oncology(2024)10.1186/s40164-024-00484-9

N/A

0.494DataRank · unranked

26 citations

Changying Jiang, Alexa A Jordan, Yuxuan Che, Yang Liu, Qingsong Cai +18 more

USP7 substrates identified by proteomics analysis reveal the specificity of USP7

Genes & Development(2022)10.1101/gad.349848.122

N/A

0.483DataRank · unranked

24 citations

Chao Wang, Xiaoguang Liu, Hongqi Teng, Siting Li, Min Huang +8 more

The kynurenine pathway in Alzheimer's disease: a meta-analysis of central and peripheral levels

Brazilian Journal of Psychiatry(2023)10.47626/1516-4446-2022-2962

N/A

0.477DataRank · unranked

23 citations

Mehmet Enes Inam, Nitesh Enduru, João Quevedo, Zhongming Zhao, Brisa S. Fernandes

DeepVISP: Deep Learning for Virus Site Integration Prediction and Motif Discovery

Advanced Science(2021)10.1002/advs.202004958

N/A

0.457DataRank · unranked

20 citations

Peilin Jia, Zhongming Zhao, Haodong Xu

Dense module searching for gene networks associated with multiple sclerosis

BMC Medical Genomics(2020)10.1186/s12920-020-0674-5

N/A

0.442DataRank · unranked

18 citations

Yulin Dai, Léorah Freeman, Peilin Jia, Zhongming Zhao, Astrid M. Manuel

Enabling the clinical application of artificial intelligence in genomics: a perspective of the AMIA Genomics and Translational Bioinformatics Workgroup

Journal of the American Medical Informatics Association(2023)10.1093/jamia/ocad211

N/A

0.434DataRank · unranked

17 citations

Radha Nagarajan, Chen Wang, Murat Sincan, Robert R. Freimuth, David B. Everman +14 more

Single-cell chromatin accessibility profiling of acute myeloid leukemia reveals heterogeneous lineage composition upon therapy-resistance

Communications Biology(2023)10.1038/s42003-023-05120-6

N/A

0.425DataRank · unranked

16 citations

Feng Wang, Andy G.X. Zeng, Alex Murison, Katarzyna Tomczak, Dapeng Hao +14 more

EmptyNN: A neural network based on positive and unlabeled learning to remove cell-free droplets and recover lost cells in scRNA-seq data

Patterns(2021)10.1016/j.patter.2021.100311

N/A

0.425DataRank · unranked

16 citations

Zhongming Zhao, Lukas M. Simon, Fangfang Yan

Preventive Treatment with a CD73 Small Molecule Inhibitor Enhances Immune Surveillance in K-Ras Mutant Pancreatic Intraepithelial Neoplasia

Cancer Prevention Research(2024)10.1158/1940-6207.capr-24-0200

N/A

0.376DataRank · unranked

6 citations

Wendao Liu, Usama Khamis Hussein, Nicolette Mardik, Xian Chen, Tingting Mills +10 more

DeepFace: Deep-learning-based framework to contextualize orofacial-cleft-related variants during human embryonic craniofacial development

Human Genetics and Genomics Advances(2024)10.1016/j.xhgg.2024.100312

N/A

0.360DataRank · unranked

10 citations

Toshiyuki Itai, Guangsheng Pei, Fangfang Yan, Yan Chu, Xiaoqian Jiang +7 more

Depletion of Adipose Stroma-Like Cancer-Associated Fibroblasts Potentiates Pancreatic Cancer Immunotherapy

Cancer Research Communications(2024)10.1158/2767-9764.crc-24-0298

N/A

0.352DataRank · unranked

8 citations

Alexes C. Daquinag, Yongmei Yu, Yulin Dai, Zhongming Zhao, Mikhail G. Kolonin +1 more

Rewired Pathways and Disrupted Pathway Crosstalk in Schizophrenia Transcriptomes by Multiple Differential Coexpression Methods

Genes(2021)10.3390/genes12050665

N/A

0.330DataRank · unranked

8 citations

Yan Guo, Jingchun Chen, Xiangning Chen, Peilin Jia, Zhongming Zhao +1 more

Deep learning for detecting and elucidating human T-cell leukemia virus type 1 integration in the human genome

Patterns(2023)10.1016/j.patter.2022.100674

N/A

0.330DataRank · unranked

8 citations

Johnathan Jia, Hyun-Hwan Jeong, Zhongming Zhao, Haodong Xu

Systematic transcriptome profiling of hPSC-derived osteoblasts unveils CORIN's mastery in governing osteogenesis through CEBPD modulation

Journal of Biological Chemistry(2024)10.1016/j.jbc.2024.107494

N/A

0.317DataRank · unranked

5 citations

Mo-Fan Huang, An Xu, Xueqin Gao, Yuwen Huang, Trinh T. T. Phan +19 more

Retraction Note: Identification of de novo mutations in prenatal neurodevelopment-associated genes in schizophrenia in two Han Chinese patient-sibling family-based cohorts

Translational Psychiatry(2020)10.1038/s41398-020-01116-6

N/A

0.308DataRank · unranked

4 citations

Daizhan Zhou, Yin‐Ying Wang, Peilin Jia, Chunling Wan, Xingwang Li +13 more

Classification of schizophrenia, bipolar disorder and major depressive disorder with comorbid traits and deep learning algorithms

Schizophrenia(2025)10.1038/s41537-025-00564-7

N/A

0.292DataRank · unranked

6 citations

Yimei Lu, Joan Manuel Cue, Mira Han, Vishwajit L. Nimgaonkar, Daniel R. Weinberger +4 more

Single-nucleus multiomics reveals the disrupted regulatory programs in three brain regions of sporadic early-onset Alzheimer’s disease

Science Advances(2025)10.1126/sciadv.adw4917

Top 58%

0.272DataRank

Top 58%5 citations

Citu Citu, Nitesh Enduru, Xian Chen, Chia-Hao Tung, Tirthankar Sinha +10 more

Single-cell RNA sequencing reveals a strong connection between Gadd45g upregulation and oncolytic HSV infection in tumor tissue

Molecular Therapy — Oncolytics(2021)10.1016/j.omto.2021.10.006

N/A

0.269DataRank · unranked

5 citations

Guangsheng Pei, Zhongming Zhao, Xiaoliu Zhang, Divya Ravirala

Retracted: Identification of de novo mutations in prenatal neurodevelopment-associated genes in schizophrenia in two Han Chinese patient-sibling family-based cohorts

Translational Psychiatry(2020)10.1038/s41398-020-00987-z

N/A

0.269DataRank · unranked

5 citations

Daizhan Zhou, Yin‐Ying Wang, Peilin Jia, Chunling Wan, Xingwang Li +13 more

Identification and catalog of viral transcriptional regulators in human diseases

iScience(2025)10.1016/j.isci.2025.112081

N/A

0.241DataRank · unranked

4 citations

Le Chang, Astrid M. Manuel, Nitesh Enduru, Zhongming Zhao, Citu Citu

NetBCE: An Interpretable Deep Neural Network for Accurate Prediction of Linear B-Cell Epitopes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.23.493092

Top 61%

0.239DataRank

Top 61%3 citations

Zhongming Zhao, Haodong Xu

Investigating gene functions and single-cell expression profiles of de novo variants in orofacial clefts

Human Genetics and Genomics Advances(2024)10.1016/j.xhgg.2024.100313

N/A

0.208DataRank · unranked

3 citations

Fangfang Yan, Andi Liu, Yulin Dai, Chihiro Iwaya, Sarah W. Curtis +7 more

A Model-agnostic Computational Method for Discovering Gene–Phenotype Relationships and Inferring Gene Networks via in silico Gene Perturbation

medRxiv(2024)10.1101/2024.02.21.24303141

N/A

0.165DataRank · unranked

2 citations

Xiangning Chen, Zhongming Zhao, Rastko Stojšin

Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Communications Biology(2022)10.1038/s42003-022-03769-z

N/A

0.165DataRank · unranked

2 citations

Lars Feuerbach, Chen Hong, David Mas-Ponte, Randi Istrup Pedersen, PCAWG Drivers and Functional Interpretation Group +1255 more

De novo mutations disturb early brain development more frequently than common variants in schizophrenia

American Journal of Medical Genetics Part B Neuropsychiatric Genetics(2023)10.1002/ajmg.b.32932

Top 72%

0.119DataRank

Top 72%1 citations

Peilin Jia, Yulin Dai, Jingchun Chen, Xiangning Chen, Zhongming Zhao +1 more

NO-BOUNDARY THINKING IN BIOINFORMATICS

Biocomputing 2017(2016)10.1142/9789813207813_0060

N/A

0.104DataRank · unranked

1 citations

STEVEN F. JENNINGS, Casey S. Greene, ANDY D. PERKINS, CLARLYNDA WILLIAMS-DEVANE, DONALD C. WUNSCH +6 more

Single-nucleus multiomics reveals the disrupted regulatory programs in three brain regions of sporadic early-onset Alzheimer’s disease

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.25.600720

Top 78%

0.104DataRank

Top 78%1 citations

Citu Citu, Nitesh Enduru, Xian Chen, Astrid M. Manuel, Tirthankar Sinha +8 more

FADVI: disentangled representation learning for robust integration of single-cell and spatial omics data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.03.683998

N/A

0.104DataRank · unranked

1 citations

Gang Qu, Lukas M. Simon, Fabian Joachim Theis, Zhongming Zhao, Wendao Liu

Single-Cell Transcriptomics Reveals Pre-existing COVID-19 Vulnerability Factors in Lung Cancer Patients

Molecular Cancer Research(2023)10.1158/1541-7786.mcr-23-0692

N/A

0.104DataRank · unranked

1 citations

Wenbo Li, Zhongming Zhao, Wendao Liu

Enhancing the utility of polygenic scores in Alzheimer’s disease through systematic curation and annotation

Frontiers in Genetics(2025)10.3389/fgene.2025.1507395

Top 78%

0.104DataRank

Top 78%1 citations

Yulin Dai, Nitesh Enduru, Zhongming Zhao, Savannah Mwesigwa

Disentangling accelerated cognitive decline from the normal aging process and unraveling its genetic components: A neuroimaging-based deep learning approach

Research Square(2023)10.21203/rs.3.rs-3328861/v1

N/A

0.104DataRank · unranked

1 citations

Yu‐Chun Hsu, Brisa S. Fernandes, Kai Zhang, Xiaoyang Li, Nitesh Enduru +5 more

CD8+ T cell differentiation into NK-like effector cells drives transplant rejection

Molecular Therapy(2026)10.1016/j.ymthe.2026.01.024

N/A

0.104DataRank · unranked

1 citations

Stephanie G. Yi, Yulin Dai, Luan Truong, Lillian W. Gaber, Richard J. Knight +7 more

EmptyNN: A neural network based on positive-unlabeled learning to remove cell-free droplets and recover lost cells in single-cell RNA sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.15.426387

N/A

0.104DataRank · unranked

1 citations

Zhongming Zhao, Lukas M. Simon, Fangfang Yan

GDF5+ chondroprogenitors derived from human pluripotent stem cells preferentially form permanent chondrocytes

Development(2022)10.1242/dev.196220

N/A

0DataRank · unranked

9 citations

Berke E. Sahbazoglu, Bryan Ang, Nadine Matthias, Guangsheng Pei, Qing Yan +5 more

A Method for Bridging Population-Specific Genotypes to Detect Gene Modules Associated with Alzheimer’s Disease

Cells(2022)10.3390/cells11142219

N/A

0DataRank · unranked

6 citations

Peilin Jia, Zhongming Zhao, Assaf Gottlieb, Yulin Dai

A multicenter study of clinical impact of variant of uncertain significance reclassification in breast, ovarian, and colorectal cancer susceptibility genes.

Journal of Clinical Oncology(2022)10.1200/jco.2022.40.16_suppl.10512

N/A

0DataRank · unranked

3 citations

Brooke Levin, Megan Ensinger, Kristin Mattie, Robert J. Volk, Zhongming Zhao +9 more

Single-cell multi-omics decodes regulatory programs during development of mouse secondary palate

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.02.514609

N/A

0DataRank · unranked

1 citations

Akiko Suzuki, Chihiro Iwaya, Guangsheng Pei, Xian Chen, Hiroki Yoshioka +5 more

Drug-Target Network Study Reveals the Core Target-Protein Interactions of Various COVID-19 Treatments

Genes(2022)10.3390/genes13071210

N/A

0DataRank · unranked

0 citations

Hui Yu, Qiheng Yan, Bingrui Li, Andi Liu, Wendao Liu +5 more

MitoTrace: A Computational Framework for Analyzing Mitochondrial Variation in Single-Cell RNA Sequencing Data

Genes(2023)10.3390/genes14061222

N/A

0DataRank · unranked

67 citations

Wankun Deng, David C. Samuels, Zhongming Zhao, Lukas M. Simon, Mingqiang Wang

CD73-Dependent Adenosine Signaling through Adora2b Drives Immunosuppression in Ductal Pancreatic Cancer

Cancer Research(2023)10.1158/0008-5472.can-22-2553

N/A

0DataRank · unranked

59 citations

Kanchan Singh, Vidhi Chandra, Olivereen Le Roux, Yulin Dai, İsmet Şahin +24 more

Rewired m6A epitranscriptomic networks link mutant p53 to neoplastic transformation

Nature Communications(2023)10.1038/s41467-023-37398-9

N/A

0DataRank · unranked

20 citations

Mo Liu, Mo-Fan Huang, Yang Zhang, Ruifeng Hu, Julian A. Gingold +28 more

PKR induces TGF-β and limits oncolytic immune therapy

Journal for ImmunoTherapy of Cancer(2023)10.1136/jitc-2022-006164

N/A

0DataRank · unranked

18 citations

Upasana Sahu, Matthew P. Mullarkey, Evan Hong, Guangsheng Pei, Yuanqing Yan +8 more

Accurate prediction of functional effect of single amino acid variants with deep learning

Computational and Structural Biotechnology Journal(2023)10.1016/j.csbj.2023.11.017

N/A

0DataRank · unranked

17 citations

Zhongming Zhao, Qian Liu, Houssemeddine Derbel

The transcription factor IRF4 determines the anti-tumor immunity of CD8+ T cells

iScience(2023)10.1016/j.isci.2023.108087

N/A

0DataRank · unranked

15 citations

Yulin Dai, Xiaolong Zhang, Hedong Zhang, Xiang Xiao, Jinfei Fu +7 more

Enzalutamide-induced signatures revealed by epigenetic plasticity using single-cell multi-omics sequencing in prostate cancer

Molecular Therapy — Nucleic Acids(2023)10.1016/j.omtn.2023.02.022

N/A

0DataRank · unranked

14 citations

Jinze Li, Astrid M. Manuel, Zhongming Zhao, Huihui Fan

oHSV-P10 reduces glioma stem cell enrichment after oncolytic HSV therapy

Molecular Therapy — Oncolytics(2023)10.1016/j.omto.2023.03.003

N/A

0DataRank · unranked

14 citations

Matthew P. Mullarkey, Guangsheng Pei, Zhongming Zhao, Bangxing Hong, Balveen Kaur +1 more

The kynurenine pathway in major depressive disorder, bipolar disorder, and schizophrenia: a systematic review and meta-analysis of cerebrospinal fluid studies

Brazilian Journal of Psychiatry(2023)10.47626/1516-4446-2022-2973

N/A

0DataRank · unranked

13 citations

Brisa S. Fernandes, Estela Salagre, Iría Grande, Eduard Vieta, João Quevedo +2 more

Comparative performance analysis of binary variants of FOX optimization algorithm with half-quadratic ensemble ranking method for thyroid cancer detection

Scientific Reports(2023)10.1038/s41598-023-46865-8

N/A

0DataRank · unranked

13 citations

G. K. Mahanti, Ganapati Panda, Adyasha Rath, Sujata Dash, Saurav Mallik +2 more

Federated learning based futuristic biomedical big-data analysis and standardization

PLoS ONE(2023)10.1371/journal.pone.0291631

N/A

0DataRank · unranked

12 citations

Syed Muzamil Basha, Syed Thouheed Ahmed, Sandeep Kumar Mathivanan, Sukumar Rajendran, Saurav Mallik +2 more

Investigating cellular heterogeneity at the single-cell level by the flexible and mobile extrachromosomal circular DNA

Computational and Structural Biotechnology Journal(2023)10.1016/j.csbj.2023.01.025

N/A

0DataRank · unranked

11 citations

Yulin Dai, Jinze Li, Huihui Fan, Zhongming Zhao, Jiajinlong Kang

Convolutional neural network for biomarker discovery for triple negative breast cancer with RNA sequencing data

Heliyon(2023)10.1016/j.heliyon.2023.e14819

N/A

0DataRank · unranked

7 citations

Justin M. Balko, Fei Ling, Yabin Jin, Anneliese Gonzalez, Zhongming Zhao +2 more

Gene expression in mice with endothelium-specific telomerase knockout

Frontiers in Cell and Developmental Biology(2023)10.3389/fcell.2023.1295072

N/A

0DataRank · unranked

5 citations

Yongmei Yu, Yulin Dai, Zhongming Zhao, Kristin Eckel‐Mahan, Mikhail G. Kolonin +1 more

Machine learning-driven exploration of drug therapies for triple-negative breast cancer treatment

Frontiers in Molecular Biosciences(2023)10.3389/fmolb.2023.1215204

N/A

0DataRank · unranked

2 citations

Zhongming Zhao, Aman Chandra Kaushik

Improving drug development in precision psychiatry by ameliorating cognitive biases

European Neuropsychopharmacology(2023)10.1016/j.euroneuro.2023.02.001

N/A

0DataRank · unranked

1 citations

Zhongming Zhao, Brisa S. Fernandes

An Improved Method for Diagnosis of Parkinson’s Disease using Deep Learning Models Enhanced with Metaheuristic Algorithm

Research Square(2023)10.21203/rs.3.rs-3387953/v1

N/A

0DataRank · unranked

9 citations

Babita Majhi, Aarti Kashyap, Siddarth Mohanty, Sujata Dash, Aimin Li +2 more

Unraveling the intercellular communication disruption and key pathways in Alzheimer's disease: An integrative study of single-nucleus transcriptomes and genetic association

Research Square(2023)10.21203/rs.3.rs-3335643/v1

N/A

0DataRank · unranked

4 citations

Brisa S. Fernandes, Citu Citu, Zhongming Zhao, Andi Liu

GRPa-PRS: A risk stratification method to identify genetically-regulated pathways in polygenic diseases

medRxiv(2023)10.1101/2023.06.19.23291621

N/A

0DataRank · unranked

3 citations

Brisa S. Fernandes, Andi Liu, Jingchun Chen, Xiangning Chen, Zhongming Zhao +2 more

Data from Genetic Variation in VEGF Family Genes and Breast Cancer Risk: A Report from the Shanghai Breast Cancer Genetics Study

(2023)10.1158/1055-9965.c.6514938.v1

Top 100%

0DataRank

Top 100%0 citations

Xiao‐Ou Shu, Wei Lü, Jirong Long, Qiuyin Cai, Yong‐Bing Xiang +6 more

Data from Genetic Variation in VEGF Family Genes and Breast Cancer Risk: A Report from the Shanghai Breast Cancer Genetics Study

(2023)10.1158/1055-9965.c.6514938

Top 100%

0DataRank

Top 100%0 citations

Xiao‐Ou Shu, Wei Lü, Jirong Long, Qiuyin Cai, Yong‐Bing Xiang +6 more

Data from NOTCH-Induced MDSC Recruitment after oHSV Virotherapy in CNS Cancer Models Modulates Antitumor Immunotherapy

(2023)10.1158/1078-0432.c.6531185

N/A

0DataRank · unranked

0 citations

Ji Young Yoo, Cole T. Lewis, Samantha Chao, Jessica Swanner, Toshihiko Shimizu +17 more

Data from NOTCH-Induced MDSC Recruitment after oHSV Virotherapy in CNS Cancer Models Modulates Antitumor Immunotherapy

(2023)10.1158/1078-0432.c.6531185.v1

N/A

0DataRank · unranked

0 citations

Ji Young Yoo, Cole T. Lewis, Samantha Chao, Jessica Swanner, Toshihiko Shimizu +17 more

Astrocyte-induced Cdk5 expedites breast cancer brain metastasis by suppressing MHC-I expression to evade immune recognition

Nature Cell Biology(2024)10.1038/s41556-024-01509-5

N/A

0DataRank · unranked

57 citations

Frank J. Lowery, Yohei Saito, Xiangliang Yuan, Jun Yao, Yimin Duan +17 more

Genetic Deletion of Galectin-3 Inhibits Pancreatic Cancer Progression and Enhances the Efficacy of Immunotherapy

Gastroenterology(2024)10.1053/j.gastro.2024.03.007

N/A

0DataRank · unranked

36 citations

Xinlei Sun, Rohan Moniruzzaman, Hua Wang, Citu Citu, Zhongming Zhao +5 more

Unraveling the intercellular communication disruption and key pathways in Alzheimer’s disease: an integrative study of single-nucleus transcriptomes and genetic association

Alzheimer s Research & Therapy(2024)10.1186/s13195-023-01372-w

N/A

0DataRank · unranked

34 citations

Brisa S. Fernandes, Citu Citu, Zhongming Zhao, Andi Liu

Cell-specific regulation of the circadian clock by BMAL1 in the paraventricular nucleus: Implications for regulation of systemic biological rhythms

Cell Reports(2024)10.1016/j.celrep.2024.114380

N/A

0DataRank · unranked

17 citations

Yulin Dai, Haichao Wei, Baharan Fekry, Sina Noori, Samay Shivshankar +8 more

DNA double-stranded breaks, a hallmark of aging, defined at the nucleotide resolution, are increased and associated with transcription in the cardiac myocytes in LMNA-cardiomyopathy

Cardiovascular Research(2024)10.1093/cvr/cvae063

N/A

0DataRank · unranked

14 citations

Sirisha Cheedipudi, Leila Rouhi, Zhongming Zhao, Priyatansh Gurha, Ali J. Marian +1 more

Genome-wide CRISPR screen reveals the synthetic lethality between BCL2L1 inhibition and radiotherapy

Life Science Alliance(2024)10.26508/lsa.202302353

N/A

0DataRank · unranked

8 citations

Xiaoding Hu, Guangsheng Pei, Mengfan Tang, You Zhou, Huimin Zhang +9 more

Targeting a chemo-induced adaptive signaling circuit confers therapeutic vulnerabilities in pancreatic cancer

Cell Discovery(2024)10.1038/s41421-024-00720-w

N/A

0DataRank · unranked

7 citations

Yi Xiao, Jun Yao, Yunhai Li, Wendao Liu, Arseniy E. Yuzhalin +26 more

GENEVIC: GENetic data Exploration and Visualization via Intelligent interactive Console

Bioinformatics(2024)10.1093/bioinformatics/btae500

N/A

0DataRank · unranked

6 citations

Savannah Mwesigwa, Yulin Dai, Xiaoqian Jiang, Zhongming Zhao, Anindita Nath

Aging- and alcohol-associated spatial transcriptomic signature in mouse acute pancreatitis reveals heterogeneity of inflammation and potential pathogenic factors

Journal of Molecular Medicine(2024)10.1007/s00109-024-02460-6

N/A

0DataRank · unranked

5 citations

Yuntao Yang, Isabella E Hernandez, Amy Qin, Jiajing Li, Yinjie Zhang +11 more

Unveiling Gene Interactions in Alzheimer’s Disease by Integrating Genetic and Epigenetic Data with a Network-Based Approach

Epigenomes(2024)10.3390/epigenomes8020014

N/A

0DataRank · unranked

2 citations

Astrid M. Manuel, Andi Liu, Boyan Leng, Xiangning Chen, Zhongming Zhao +1 more

Disentangling Accelerated Cognitive Decline from the Normal Aging Process and Unraveling Its Genetic Components: A Neuroimaging-Based Deep Learning Approach

Journal of Alzheimer s Disease(2024)10.3233/jad-231020

N/A

0DataRank · unranked

5 citations

Yu-Chun Hsu, Brisa S. Fernandes, Kai Zhang, Xiaoyang Li, Nitesh Enduru +6 more

Montelukast as a repurposable additive drug for standard-efficacy multiple sclerosis treatment: Emulating clinical trials with retrospective administrative health claims data

Multiple Sclerosis Journal(2024)10.1177/13524585241240398

N/A

0DataRank · unranked

3 citations

Assaf Gottlieb, Léorah Freeman, Zhongming Zhao, Astrid M. Manuel

Sex differences in metabolic adaptation in infants with cyanotic congenital heart disease

Pediatric Research(2024)10.1038/s41390-024-03291-4

N/A

0DataRank · unranked

2 citations

Ana C. Palei, Kyung Serk Cho, Zhongming Zhao, Caleb Shi, Gouri Mahajan +4 more

Single-nucleus multiomics reveals the disrupted regulatory programs in three brain regions of sporadic early-onset Alzheimer's disease

Research Square(2024)10.21203/rs.3.rs-4622123/v1

N/A

0DataRank · unranked

3 citations

Andi Liu, Citu Citu, Nitesh Enduru, Xian Chen, Astrid M. Manuel +8 more

Dynamic dysregulation of retrotransposons in neurodegenerative diseases at the single-cell level

Genome Research(2024)10.1101/gr.279363.124

N/A

0DataRank · unranked

1 citations

Citu Citu, Andi Liu, Zhongming Zhao, Wankun Deng

Classification of Schizophrenia, Bipolar Disorder and Major Depressive Disorder with Comorbid Traits and Deep Learning Algorithms

Research Square(2024)10.21203/rs.3.rs-4001384/v1

N/A

0DataRank · unranked

0 citations

Yimei Liu, Joan Manuel Cue, Mira Han, Vishwajit L. Nimgaonkar, Daniel R. Weinberger +4 more

Revisiting the Relative Contribution of Common and Rare Genetic Variants to Attention-Deficit/Hyperactivity Disorder Among Diverse Populations

Biological Psychiatry(2024)10.1016/j.biopsych.2024.02.1007

N/A

0DataRank · unranked

0 citations

Brisa S. Fernandes, Zhongming Zhao, Yulin Dai

Scupa: Single-cell unified polarization assessment of immune cells using the single-cell foundation model

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.15.608093

N/A

0DataRank · unranked

0 citations

Zhongming Zhao, Wendao Liu

Session Introduction: Translating Big Data Imaging Genomics Findings to the Individual: Prediction of Risks and Outcomes in Neuropsychiatric Illnesses

PubMed(2024)10.1142/9789819807024_0042

N/A

0DataRank · unranked

0 citations

Li Shen, Zhongming Zhao, Paul M. Thompson, Peter Kochunov

Enhanced and Interpretable Prediction of Multiple Cancer Types Using a Stacking Ensemble Approach with SHAP Analysis

Bioengineering(2025)10.3390/bioengineering12050472

N/A

0DataRank · unranked

16 citations

Pijush Kanti Dutta Pramanik, Zhongming Zhao, Shahid Mohammad Ganie

Quantitative profiling of intratumor immune heterogeneity identifies loss of immune diversity as a hallmark of cancer progression

npj Precision Oncology(2025)10.1038/s41698-025-01223-x

N/A

0DataRank · unranked

4 citations

Jiangti Luo, Chia-Hao Tung, Xiaosheng Wang, Zhongming Zhao, Qiqi Lu

Opposing roles of microglial and macrophagic C3ar1 signaling in stress-induced synaptic and behavioral changes

Molecular Psychiatry(2025)10.1038/s41380-025-03097-8

N/A

0DataRank · unranked

3 citations

Alona Bartosh, Dania Jose, Jocelyn Mata, Usama Khamis Hussein, Fernanda Laezza +3 more

Deep5mC: Predicting 5-methylcytosine (5mC) methylation status using a deep learning transformer approach

Computational and Structural Biotechnology Journal(2025)10.1016/j.csbj.2025.02.007

N/A

0DataRank · unranked

3 citations

Houssemeddine Derbel, Zhongming Zhao, Qian Liu, Evan Kinnear

MMRT: MultiMut Recursive Tree for predicting functional effects of high-order protein variants from low-order variants

Computational and Structural Biotechnology Journal(2025)10.1016/j.csbj.2025.02.012

N/A

0DataRank · unranked

1 citations

Houssemeddine Derbel, Zhongming Zhao, Qian Liu, Bryce Forrest

iGTP: learning interpretable cellular embedding for inferring biological mechanisms underlying single-cell transcriptomics

Briefings in Bioinformatics(2025)10.1093/bib/bbaf296

N/A

0DataRank · unranked

1 citations

Kai Zhang, Yan Chu, Lishan Yu, Xiaoyang Li, Na Hu +8 more

GRPa‐PRS: A risk stratification method to identify genetically‐regulated pathways in polygenic diseases

Alzheimer s & Dementia(2025)10.1002/alz.70779

N/A

0DataRank · unranked

1 citations

Brisa S. Fernandes, Andi Liu, Jingchun Chen, Xiangning Chen, Zhongming Zhao +2 more

BrainGeneBot: a framework for variant prioritization and generative pretrained transformer-informed interpretation across polygenic risk score studies

Briefings in Bioinformatics(2025)10.1093/bib/bbaf565

N/A

0DataRank · unranked

1 citations

Nitesh Enduru, Xinyi Liu, Xiaoqian Jiang, Zhongming Zhao, Gang Qu

Cytoplasmic dynamics are overlooked in single nuclei RNA-seq but can be rescued by CytoRescue, a generative AI model to recover cytoplasm enriched gene

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.15.670239

N/A

0DataRank · unranked

2 citations

Zhongming Zhao, Wankun Deng

Scupa: single-cell unified polarization assessment of immune cells using the single-cell foundation model

Bioinformatics(2025)10.1093/bioinformatics/btaf090

N/A

0DataRank · unranked

0 citations

Zhongming Zhao, Wendao Liu

Estrogen-related receptor alpha promotes skeletal muscle regeneration and mitigates muscular dystrophy

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.15.654390

N/A

0DataRank · unranked

0 citations

Yiyun Huang, Світлана Полякова, Citu Citu, Eira Mann, Danesh H. Sopariwala +4 more

Thought Graph: Balancing Specificity and Uncertainty in LLM-Based Gene Set Annotation

(2025)10.1109/ichi64645.2025.00060

N/A

0DataRank · unranked

0 citations

Gang Qu, Chi-Yang Hsu, Jiawei Xu, Yingtong Zhou, Zhen Tan +6 more

Multi-scale Data Improves Performance of Machine Learning Model for Long COVID Prediction

Research Square(2025)10.21203/rs.3.rs-7234976/v1

N/A

0DataRank · unranked

0 citations

Christopher Guardo, Xinmeng Zhang, Srushti Gandireddy, Chao Yan, V. Eric Kerchberger +18 more

miR147 promotes mucosal integrity and healing in intestinal inflammation

JCI Insight(2025)10.1172/jci.insight.190466

N/A

0DataRank · unranked

0 citations

Arash Dabiri, Chia-Hao Tung, Victoria Vaughn, Xiangsheng Huang, Jinlian Wang +9 more

Single-cell multiome characterizing intercellular communication and intracellular regulation of epithelium and mesenchymal during secondary palate development in mice

Computational and Structural Biotechnology Journal(2025)10.1016/j.csbj.2025.09.031

N/A

0DataRank · unranked

0 citations

Yulin Dai, Andi Liu, Toshiyuki Itai, Fangfang Yan, Lukas M. Simon +2 more

Data from Preventive Treatment with a CD73 Small Molecule Inhibitor Enhances Immune Surveillance in K-Ras Mutant Pancreatic Intraepithelial Neoplasia

10.1158/1940-6207.c.7474513

N/A

0DataRank · unranked

0 citations

Wendao Liu, Usama Khamis Hussein, Nicolette Mardik, Xian Chen, Tingting Mills +10 more

Estrogen‐Related Receptor Alpha Promotes Skeletal Muscle Regeneration and Mitigates Muscular Dystrophy

The FASEB Journal(2025)10.1096/fj.202501764r

N/A

0DataRank · unranked

4 citations

Yiyun Huang, Світлана Полякова, Citu Citu, Eira Mann, Danesh H. Sopariwala +4 more

Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower

Nature Communications(2022)10.1038/s41467-022-32343-8

N/A

0DataRank · unranked

0 citations

PCAWG Drivers and Functional Interpretation Working Group, Federico Abascal, Samirkumar B. Amin, Pratiti Bandopadhayay, Rameen Beroukhim +1242 more

MicroRNA and transcription factor co-regulatory networks and subtype classification of seminoma and non-seminoma in testicular germ cell tumors

Scientific Reports(2020)10.1038/s41598-020-57834-w

N/A

0DataRank · unranked

102 citations

Saurav Mallik, Ramkrishna Mitra, Aimin Li, Peilin Jia, Christine M. Eischen +2 more

Deep4mC: systematic assessment and computational prediction for DNA N4-methylcytosine sites by deep learning

Briefings in Bioinformatics(2020)10.1093/bib/bbaa099

N/A

0DataRank · unranked

86 citations

Peilin Jia, Zhongming Zhao, Haodong Xu

Estrogen receptor-α expressing neurons in the ventrolateral VMH regulate glucose balance

Nature Communications(2020)10.1038/s41467-020-15982-7

N/A

0DataRank · unranked

81 citations

Pingwen Xu, Chunmei Wang, Yan Xia, Meng Yu, Yongjie Yang +18 more

Differential Expression of Viral Transcripts From Single-Cell RNA Sequencing of Moderate and Severe COVID-19 Patients and Its Implications for Case Severity

Frontiers in Microbiology(2020)10.3389/fmicb.2020.603509

N/A

0DataRank · unranked

43 citations

Peilin Jia, Bingliang Fang, Zhongming Zhao, Teng Liu

6mA-Finder: a novel online tool for predicting DNA N6-methyladenine sites in genomes

Bioinformatics(2020)10.1093/bioinformatics/btaa113

N/A

0DataRank · unranked

55 citations

Ruifeng Hu, Peilin Jia, Zhongming Zhao, Haodong Xu

Predicting regulatory variants using a dense epigenomic mapped CNN model elucidated the molecular basis of trait-tissue associations

Nucleic Acids Research(2020)10.1093/nar/gkaa1137

N/A

0DataRank · unranked

23 citations

Ruifeng Hu, Yulin Dai, Astrid M. Manuel, Zhongming Zhao, Peilin Jia +1 more

Landscape of drug-resistance mutations in kinase regulatory hotspots

Briefings in Bioinformatics(2020)10.1093/bib/bbaa108

N/A

0DataRank · unranked

22 citations

Hanyang Li, Junmei Wang, Zhongming Zhao, Pora Kim

FOXK1 Participates in DNA Damage Response by Controlling 53BP1 Function

Cell Reports(2020)10.1016/j.celrep.2020.108018

N/A

0DataRank · unranked

20 citations

Xu Feng, Guangsheng Pei, Mrinal Srivastava, Chao Wang, Zhen Chen +6 more

A developmental stage specific network approach for studying dynamic transcription factor-microRNA co-regulation during craniofacial development

Development(2020)10.1242/dev.192948

N/A

0DataRank · unranked

19 citations

Peilin Jia, Hiroki Yoshioka, Akiko Suzuki, Junichi Iwata, Zhongming Zhao +1 more

An integrative, genomic, transcriptomic and network-assisted study to identify genes associated with human cleft lip with or without cleft palate

BMC Medical Genomics(2020)10.1186/s12920-020-0675-4

N/A

0DataRank · unranked

22 citations

Yulin Dai, Junichi Iwata, Zhongming Zhao, Peilin Jia, Fangfang Yan

Molecular signatures identified by integrating gene expression and methylation in non-seminoma and seminoma of testicular germ cell tumours

Epigenetics(2020)10.1080/15592294.2020.1790108

N/A

0DataRank · unranked

17 citations

Guimin Qin, Peilin Jia, Zhongming Zhao, Saurav Mallik

DrivAER: Identification of driving transcriptional programs in single-cell RNA sequencing data

GigaScience(2020)10.1093/gigascience/giaa122

N/A

0DataRank · unranked

17 citations

Fangfang Yan, Zhongming Zhao, Lukas M. Simon

Temozolomide-Induced RNA Interactome Uncovers Novel LncRNA Regulatory Loops in Glioblastoma

Cancers(2020)10.3390/cancers12092583

N/A

0DataRank · unranked

10 citations

Arnaud Muller, Wei Jiang, Ramkrishna Mitra, Mohamad Sarmini, Monika Dieterle +8 more

Characterization of genome-wide association study data reveals spatiotemporal heterogeneity of mental disorders

BMC Medical Genomics(2020)10.1186/s12920-020-00832-8

N/A

0DataRank · unranked

11 citations

Timothy O’Brien, Guangsheng Pei, Zhongming Zhao, Peilin Jia, Yulin Dai

Detecting methylation signatures in neurodegenerative disease by density-based clustering of applications with reducing noise

Scientific Reports(2020)10.1038/s41598-020-78463-3

N/A

0DataRank · unranked

10 citations

Zhongming Zhao, Saurav Mallik

Convergent genomic and pharmacological evidence of PI3K/GSK3 signaling alterations in neurons from schizophrenia patients

Neuropsychopharmacology(2020)10.1038/s41386-020-00924-0

N/A

0DataRank · unranked

37 citations

Jessica Di Re, Guangsheng Pei, Gabriel R. Fries, Emily Méndez, Shenglan Li +10 more

Gene expression imputation and cell-type deconvolution in human brain with spatiotemporal precision and its implications for brain-related disorders

Genome Research(2020)10.1101/gr.265769.120

N/A

0DataRank · unranked

20 citations

Yin‐Ying Wang, Lukas M. Simon, Yulin Dai, Zhongming Zhao, Peilin Jia +1 more

INSCT: Integrating millions of single cells using batch-aware triplet neural networks

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.16.100024

N/A

0DataRank · unranked

5 citations

Yin‐Ying Wang, Zhongming Zhao, Lukas M. Simon

The allergy mediator histamine confers resistance to immunotherapy in cancer patients via activation of the macrophage histamine receptor H1

Cancer Cell(2021)10.1016/j.ccell.2021.11.002

N/A

0DataRank · unranked

310 citations

Yi Xiao, Qin Li, Jun Yao, Xiangliang Yuan, Yuan Zhang +15 more

Deep generative neural network for accurate drug response imputation

Nature Communications(2021)10.1038/s41467-021-21997-5

N/A

0DataRank · unranked

91 citations

Ruifeng Hu, Guangsheng Pei, Yulin Dai, Yin‐Ying Wang, Zhongming Zhao +1 more

MicroRNA-138 suppresses glioblastoma proliferation through downregulation of CD44

Scientific Reports(2021)10.1038/s41598-021-88615-8

N/A

0DataRank · unranked

55 citations

Yin-Ying Wang, Ji Young Yoo, Christina S. Oh, Yoshihiro Otani, Jin Muk Kang +9 more

Cell-type deconvolution analysis identifies cancer-associated myofibroblast component as a poor prognostic factor in multiple cancer types

Oncogene(2021)10.1038/s41388-021-01870-x

N/A

0DataRank · unranked

52 citations

Guangsheng Pei, Jun Yao, Qingqing Ding, Peilin Jia, Zhongming Zhao +1 more

Genome-Wide Correlation of DNA Methylation and Gene Expression in Postmortem Brain Tissues of Opioid Use Disorder Patients

The International Journal of Neuropsychopharmacology(2021)10.1093/ijnp/pyab043

N/A

0DataRank · unranked

40 citations

Yulin Dai, Emily Méndez, Ruifeng Hu, Gabriel R. Fries, Katherine Najera +7 more

Progression of prostate carcinoma is promoted by adipose stromal cell-secreted CXCL12 signaling in prostate epithelium

npj Precision Oncology(2021)10.1038/s41698-021-00160-9

N/A

0DataRank · unranked

42 citations

Alexes C. Daquinag, Songyeon Ahn, Achinto Saha, Yulin Dai, Zhongming Zhao +3 more

DeepFun: a deep learning sequence-based model to decipher non-coding variant effect in a tissue- and cell type-specific manner

Nucleic Acids Research(2021)10.1093/nar/gkab429

N/A

0DataRank · unranked

29 citations

Ruifeng Hu, Peilin Jia, Zhongming Zhao, Guangsheng Pei

Estrogen‐related receptor α is involved in angiogenesis and skeletal muscle revascularization in hindlimb ischemia

The FASEB Journal(2021)10.1096/fj.202001794rr

N/A

0DataRank · unranked

28 citations

Neah Likhite, Guangsheng Pei, Fnu Haroon, Lisa Lin, Vikas Yadav +3 more

Hypoxia‐inducible factor‐dependent induction of myeloid‐derived netrin‐1 attenuates natural killer cell infiltration during endotoxin‐induced lung injury

The FASEB Journal(2021)10.1096/fj.202002407r

N/A

0DataRank · unranked

25 citations

Jiwen Li, Boyun Kim, Tingting Mills, Guangsheng Pei, Zhongming Zhao +6 more

Genome-wide CRISPR screens reveal cyclin C as synthetic survival target of BRCA2

Nucleic Acids Research(2021)10.1093/nar/gkab540

N/A

0DataRank · unranked

24 citations

Guangsheng Pei, Dan Su, Chao Wang, Xu Feng, Mrinal Srivastava +4 more

Investigating Cellular Trajectories in the Severity of COVID-19 and Their Transcriptional Programs Using Machine Learning Approaches

Genes(2021)10.3390/genes12050635

N/A

0DataRank · unranked

20 citations

Johnathan Jia, Yulin Dai, Lukas M. Simon, Zhongming Zhao, Hyun-Hwan Jeong

Artificial image objects for classification of schizophrenia with GWAS-selected SNVs and convolutional neural network

Patterns(2021)10.1016/j.patter.2021.100303

N/A

0DataRank · unranked

15 citations

Daniel Chen, Zhongming Zhao, Justin Zhan, JI Chang-rong, Jingchun Chen +1 more

MicroRNA-138 Increases Chemo-Sensitivity of Glioblastoma through Downregulation of Survivin

Biomedicines(2021)10.3390/biomedicines9070780

N/A

0DataRank · unranked

12 citations

Margaret Yeh, Yin‐Ying Wang, Christina S. Oh, Zhongming Zhao, Balveen Kaur +2 more

Comprehensive characterization of tumor immune landscape following oncolytic virotherapy by single-cell RNA sequencing

Cancer Immunology Immunotherapy(2021)10.1007/s00262-021-03084-2

N/A

0DataRank · unranked

9 citations

Guangsheng Pei, Zhongming Zhao, Xiaoliu Zhang, Divya Ravirala

Distinct Murine Pancreatic Transcriptomic Signatures during Chronic Pancreatitis Recovery

Mediators of Inflammation(2021)10.1155/2021/5595464

N/A

0DataRank · unranked

5 citations

Baibing Yang, Joy M. Davis, Madeline Drake, Mamoun Younes, Qiang Shen +4 more

CleftGeneDB: a resource for annotating genes associated with cleft lip and cleft palate

Science Bulletin(2021)10.1016/j.scib.2021.07.008

N/A

0DataRank · unranked

17 citations

Fangfang Yan, Ruifeng Hu, Akiko Suzuki, Chihiro Iwaya, Peilin Jia +3 more

Distinct effect of prenatal and postnatal brain expression across 20 brain disorders and anthropometric social traits: a systematic study of spatiotemporal modularity

Briefings in Bioinformatics(2021)10.1093/bib/bbab214

N/A

0DataRank · unranked

14 citations

Astrid M. Manuel, Brisa S. Fernandes, Yulin Dai, Zhongming Zhao, Peilin Jia

Artificial image objects for classification of breast cancer biomarkers with transcriptome sequencing data and convolutional neural network algorithms

Breast Cancer Research(2021)10.1186/s13058-021-01474-z

N/A

0DataRank · unranked

13 citations

Daniel Chen, Zhongming Zhao, Justin M. Balko, Jingchun Chen, Xiangning Chen

Identification of microRNAs and gene regulatory networks in cleft lip common in humans and mice

Human Molecular Genetics(2021)10.1093/hmg/ddab151

N/A

0DataRank · unranked

11 citations

Aimin Li, Akiko Suzuki, Sai Shankar Ramakrishnan, Zhongming Zhao, Junichi Iwata +1 more

Cell-Type-Specific Profibrotic Scores across Multi-Organ Systems Predict Cancer Prognosis

Cancers(2021)10.3390/cancers13236024

N/A

0DataRank · unranked

3 citations

Peilin Jia, Zhongming Zhao, Huihui Fan

Whole-Genome Differentially Hydroxymethylated DNA Regions among Twins Discordant for Cardiovascular Death

Genes(2021)10.3390/genes12081183

N/A

0DataRank · unranked

3 citations

Ming Leung, Weihua Guan, Han-Tian Guo, Ruth E. Krasnow, Thomas J. Wang +4 more

deCS : A Tool for Systematic Cell Type Annotations of Single-cell RNA Sequencing Data among Human Tissues

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.19.460993

N/A

0DataRank · unranked

6 citations

Fangfang Yan, Lukas M. Simon, Yulin Dai, Peilin Jia, Zhongming Zhao +1 more

WebCSEA: web-based cell-type-specific enrichment analysis of genes

Nucleic Acids Research(2022)10.1093/nar/gkac392

N/A

0DataRank · unranked

151 citations

Ruifeng Hu, Andi Liu, Kyung Serk Cho, Astrid M. Manuel, Xiaoyang Li +4 more

Dimensionality Reduction and Louvain Agglomerative Hierarchical Clustering for Cluster-Specified Frequent Biomarker Discovery in Single-Cell Sequencing Data

Frontiers in Genetics(2022)10.3389/fgene.2022.828479

N/A

0DataRank · unranked

55 citations

Saurav Mallik, Tapas Bhadra, Zhongming Zhao, Soumita Seth

Charting the proteome landscape in major psychiatric disorders: From biomarkers to biological pathways towards drug discovery

European Neuropsychopharmacology(2022)10.1016/j.euroneuro.2022.06.001

N/A

0DataRank · unranked

49 citations

Yulin Dai, Peilin Jia, Zhongming Zhao, Brisa S. Fernandes

Delineating COVID-19 immunological features using single-cell RNA sequencing

The Innovation(2022)10.1016/j.xinn.2022.100289

N/A

0DataRank · unranked

33 citations

Johnathan Jia, Yulin Dai, Wenhao Chen, Guangsheng Pei, Qiheng Yan +2 more

scGWAS: landscape of trait-cell type associations by integrating single-cell transcriptomics-wide and genome-wide association studies

Genome biology(2022)10.1186/s13059-022-02785-w

N/A

0DataRank · unranked

33 citations

Ruifeng Hu, Fangfang Yan, Yulin Dai, Zhongming Zhao, Peilin Jia

Adipose tissue–specific ablation of Ces1d causes metabolic dysregulation in mice

Life Science Alliance(2022)10.26508/lsa.202101209

N/A

0DataRank · unranked

29 citations

Xin Li, Li Yang, Shuyue Wang, Yulin Dai, Baharan Fekry +9 more

deCS : A Tool for Systematic Cell Type Annotations of Single-Cell RNA Sequencing Data Among Human Tissues

Genomics Proteomics & Bioinformatics(2022)10.1016/j.gpb.2022.04.001

N/A

0DataRank · unranked

24 citations

Fangfang Yan, Lukas M. Simon, Yulin Dai, Peilin Jia, Zhongming Zhao +1 more

Innately expressed estrogen‐related receptors in the skeletal muscle are indispensable for exercise fitness

The FASEB Journal(2022)10.1096/fj.202201518r

N/A

0DataRank · unranked

24 citations

Andrea S. Rios, Guangsheng Pei, Anirban Roy, Meiricris Tomaz da Silva, Hao Thi Thu Nguyen +8 more

A gene regulatory network approach harmonizes genetic and epigenetic signals and reveals repurposable drug candidates for multiple sclerosis

Human Molecular Genetics(2022)10.1093/hmg/ddac265

N/A

0DataRank · unranked

19 citations

Yulin Dai, Peilin Jia, Léorah Freeman, Zhongming Zhao, Astrid M. Manuel

Prioritization of risk genes in multiple sclerosis by a refined Bayesian framework followed by tissue-specificity and cell type feature assessment

BMC Genomics(2022)10.1186/s12864-022-08580-y

N/A

0DataRank · unranked

11 citations

Astrid M. Manuel, Yulin Dai, Zhongming Zhao, Andi Liu

Zhongming Zhao

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