Pratul K. Agarwal

Also affiliated with Department of Physiological Sciences, Oklahoma State University Oklahoma City, Computing Center

Biochemistry, Genetics and Molecular BiologyMaterials ScienceComputer ScienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 14 papers. Top paper: “Allosteric communication in class A β-lactamases occurs via cooperative coupling of loop dynamics”.

Allosteric communication in class A β-lactamases occurs via cooperative coupling of loop dynamics

eLife(2021)10.7554/elife.66567

N/A

1.8DataRank · unranked

82 citations

Shen Qu, A. Sofia F. Oliveira, Edgar Olehnovics, Andrew R Mack, María F. Mojica +8 more

APE1 active site residue Asn174 stabilizes the AP site and is essential for catalysis

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110655

N/A

0.241DataRank · unranked

4 citations

Nicole M. Hoitsma, Spencer H. Thompson, Veniamin A. Borin, Pratul K. Agarwal, Bret Freudenthal +1 more

Altered APE1 activity on abasic ribonucleotides is mediated by changes in the nucleoside sugar pucker

Computational and Structural Biotechnology Journal(2021)10.1016/j.csbj.2021.05.035

N/A

0DataRank · unranked

9 citations

Timothy H. Click, Pratul K. Agarwal, Bret Freudenthal, Nicole M. Hoitsma

Allosteric communication in Class A β-lactamases occurs via Cooperative Coupling of Loop Dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2020.12.30.424904

N/A

0DataRank · unranked

0 citations

Shen Qu, Ana Sofia F Oliveria, Edgar Olehnovics, Andrew R Mack, María F. Mojica +8 more

Conformational exchange divergence along the evolutionary pathway of eosinophil-associated ribonucleases

Structure(2023)10.1016/j.str.2022.12.011

N/A

0DataRank · unranked

5 citations

Chitra Narayanan, Tim Hempel, Khushboo Bafna, Purva P. Bhojane, Myriam Létourneau +4 more

Identifying structural and dynamic changes during the Biliverdin Reductase B catalytic cycle

Frontiers in Molecular Biosciences(2023)10.3389/fmolb.2023.1244587

N/A

0DataRank · unranked

5 citations

Matthew J. McLeod, Jasmina S. Redzic, Barbara L. Marcolin, Robert Thorne, Pratul K. Agarwal +2 more

Ancestral sequence reconstruction dissects structural and functional differences among eosinophil ribonucleases

Journal of Biological Chemistry(2024)10.1016/j.jbc.2024.107280

N/A

0DataRank · unranked

7 citations

Chitra Narayanan, Andrea N. Loes, Timothy H. Click, N. T. Hang Pham, Myriam Létourneau +5 more

Exploring CRISPR-Cas9 HNH-Domain-Catalyzed DNA Cleavage Using Accelerated Quantum Mechanical Molecular Mechanical Free Energy Simulation

Biochemistry(2024)10.1021/acs.biochem.4c00651

N/A

0DataRank · unranked

5 citations

Xiaoliang Pan, Saadi Rostami, Jin Liu, Pratul K. Agarwal, Bernard R. Brooks +3 more

Exploring CRISPR-Cas9 HNH-Domain Catalyzed DNA Cleavage Using Accelerated Quantum Mechanical Molecular Mechanical Free Energy Simulation

ChemRxiv(2024)10.26434/chemrxiv-2024-kpr4t

N/A

0DataRank · unranked

0 citations

Xiaoliang Pan, Saadi Rostami, Jin Liu, Pratul K. Agarwal, Bernard R. Brooks +3 more

Dynamical Signatures of Thermotoga maritima Maltose-Binding Proteins Affected by Ligand Binding

ACS Omega(2025)10.1021/acsomega.5c04729

N/A

0DataRank · unranked

1 citations

Laura Stingaciu, Christopher B. Stanley, Pratul K. Agarwal, M.J. Cuneo, Andreas Stadler +2 more

APE1 active site residue Asn174 stabilizes the AP-site and is essential for catalysis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.14.633034

N/A

0DataRank · unranked

0 citations

Nicole M. Hoitsma, Spencer H. Thompson, Veniamin A. Borin, Pratul K. Agarwal, Bret Freudenthal +1 more

AP-endonuclease 1 sculpts DNA through an anchoring tyrosine residue on the DNA intercalating loop

Nucleic Acids Research(2020)10.1093/nar/gkaa496

N/A

0DataRank · unranked

30 citations

Amy M. Whitaker, Emily C. Beckwitt, Sunbok Jang, Pratul K. Agarwal, Bennett Van Houten +2 more

A novel non-catalytic function of PA2803-encoded PcrP contributes to polymyxin B resistance in P. aeruginosa and redefines the functional role of the PA2803 subfamily.

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.13.653872

N/A

0DataRank · unranked

0 citations

Sharmily Khanam, Veniamin A. Borin, Maha Achour, Deok‐Kun Oh, Mert Kanik +8 more

Modulating Enzyme Function via Dynamic Allostery within Biliverdin Reductase B

Frontiers in Molecular Biosciences(2021)10.3389/fmolb.2021.691208

N/A

0DataRank · unranked

9 citations

Michael R. Duff, Ashley Blue, Todd M. Pitts, Pratul K. Agarwal, Elan Eisenmesser +1 more