Bing Ren

Columbia University Irving Medical Center

Also affiliated with University of California San Diego, La Jolla Institute For Molecular Medicine, New York Genome Center, Columbia University, Epigenomics (Germany)

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

33.2Author DataRank

Indexed papers

19in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 19 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A single-cell atlas of chromatin accessibility in the human genome

Cell(2021)10.1016/j.cell.2021.10.024

Top 4%

4.8DataRank

Top 4%533 citations

James D. Hocker, Michael Miller, Xiaomeng Hou, Joshua Chiou, Olivier Poirion +7 more

Papers

Driven by 103 papers — median percentile 81. Top paper: “PRDI-BF1/Blimp-1 repression is mediated by corepressors of the Groucho family of proteins”.

PRDI-BF1/Blimp-1 repression is mediated by corepressors of the Groucho family of proteins

Genes & Development(1999)10.1101/gad.13.1.125

N/A

12.8DataRank · unranked

255 citations

Kerlen J. Chee, Tae Hoon Kim, Tom Maniatis, Bing Ren

Characterizing cis-regulatory elements using single-cell epigenomics

Nature Reviews Genetics(2023)10.1038/s41576-022-00509-1

N/A

5.0DataRank · unranked

248 citations

Kyle J. Gaulton, Bing Ren, Sebastian Preissl

A single-cell atlas of chromatin accessibility in the human genome

Cell(2021)10.1016/j.cell.2021.10.024

Top 4%

4.8DataRank

Top 4%533 citations

James D. Hocker, Michael Miller, Xiaomeng Hou, Joshua Chiou, Olivier Poirion +7 more

An atlas of dynamic chromatin landscapes in mouse fetal development

Nature(2020)10.1038/s41586-020-2093-3

Top 5%

4.8DataRank

Top 5%441 citations

Iros Barozzi, Yuan Zhao, Yanxiao Zhang, Hui Huang, Ah Young Lee +38 more

The changing mouse embryo transcriptome at whole tissue and single-cell resolution

Nature(2020)10.1038/s41586-020-2536-x

Top 5%

4.6DataRank

Top 5%202 citations

Brian A. Williams, Diane Trout, Georgi K. Marinov, Henry Amrhein, Libera Berghella +11 more

DNA methylation atlas of the mouse brain at single-cell resolution

Nature(2021)10.1038/s41586-020-03182-8

Top 5%

4.3DataRank

Top 5%310 citations

Jingtian Zhou, Wei Tian, Chongyuan Luo, Anna Bartlett, Andrew I. Aldridge +24 more

Spatiotemporal DNA methylome dynamics of the developing mouse fetus

Nature(2020)10.1038/s41586-020-2119-x

N/A

3.6DataRank · unranked

195 citations

Manoj Hariharan, David U. Gorkin, Diane E. Dickel, Chongyuan Luo, Rosa G. Castanon +15 more

A comparative atlas of single-cell chromatin accessibility in the human brain

Science(2023)10.1126/science.adf7044

Top 7%

3.2DataRank

Top 7%159 citations

Sebastian Preissl, Michael Miller, Nicholas D. Johnson, Zihan Wang, Henry Jiao +34 more

Single-cell DNA methylation and 3D genome architecture in the human brain

Science(2023)10.1126/science.adf5357

Top 7%

3.1DataRank

Top 7%158 citations

Jingtian Zhou, Anna Bartlett, Qiurui Zeng, Hanqing Liu, Rosa G. Castanon +34 more

Genome-wide association and multi-omic analyses reveal ACTN2 as a gene linked to heart failure

Nature Communications(2020)10.1038/s41467-020-14843-7

N/A

2.3DataRank · unranked

86 citations

Emmanouil Tampakakis, Yanxiao Zhang, Wei Wang, Adam Auton, Michelle Agee +48 more

Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain

Nature(2023)10.1038/s41586-023-06805-y

Top 10%

2.1DataRank

Top 10%132 citations

Qiurui Zeng, Jingtian Zhou, Anna Bartlett, Bang-An Wang, Peter Berube +29 more

Conserved and divergent gene regulatory programs of the mammalian neocortex

Nature(2023)10.1038/s41586-023-06819-6

N/A

1.9DataRank · unranked

113 citations

Ethan J. Armand, Wenliang Wang, Seo Yeon Lee, Jingtian Zhou, Yang Eric Li +28 more

Single-cell analysis of chromatin accessibility in the adult mouse brain

Nature(2023)10.1038/s41586-023-06824-9

Top 11%

1.9DataRank

Top 11%98 citations

Yang Eric Li, Kangli Wang, Ethan J. Armand, Sainath Mamde, Maria Luisa Amaral +32 more

Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project

Molecular Cell(2023)10.1016/j.molcel.2023.06.018

N/A

1.7DataRank · unranked

97 citations

Frank Alber, Sarah Aufmkolk, Brian J. Beliveau, Benoit G. Bruneau, Andrew S. Belmont +30 more

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models

Cell(2023)10.1016/j.cell.2023.02.018

Top 15%

1.4DataRank

Top 15%82 citations

Jiahao Gao, Beatrice Borsari, Yucheng T. Yang, Timur R. Galeev, Gamze Gürsoy +95 more

Pancreatic progenitor epigenome maps prioritize type 2 diabetes risk genes with roles in development

eLife(2021)10.7554/elife.59067

N/A

0.889DataRank · unranked

27 citations

Allen Wang, Joshua Chiou, Joseph J. Lancman, Nichole Wetton, Samy Kefalopoulou +9 more

A guide to the BRAIN Initiative Cell Census Network data ecosystem

PLoS Biology(2023)10.1371/journal.pbio.3002133

Top 24%

0.845DataRank

Top 24%56 citations

Maryann E. Martone, Giorgio A. Ascoli, Jan G. Bjaalie, Hong‐Wei Dong, Satrajit S. Ghosh +95 more

Type 1 diabetes risk genes mediate pancreatic beta cell survival in response to proinflammatory cytokines

Cell Genomics(2022)10.1016/j.xgen.2022.100214

N/A

0.807DataRank · unranked

32 citations

Han Zhu, Mei-Lin Okino, Jian Yan, Ruth M. Elgamal, Naoki Nariai +18 more

Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2210991120

N/A

0.788DataRank · unranked

28 citations

Anugraha Raman, Sebastian Preissl, Jianfang Ning, Shaoping Wu, Tomoyuki Koga +22 more

Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues

Nature Structural & Molecular Biology(2024)10.1038/s41594-024-01431-2

Top 40%

0.482DataRank

Top 40%7 citations

Nathan R. Zemke, Ziyin Chen, Ivan Jurić, Rong Hu, Ramya Raviram +16 more

Epigenomic complexity of the human brain revealed by single-cell DNA methylomes and 3D genome structures

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.30.518285

Top 41%

0.468DataRank

Top 41%10 citations

Jingtian Zhou, Anna Bartlett, Qiurui Zeng, Hanqing Liu, Rosa G. Castanon +33 more

Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.10.447969

Top 43%

0.435DataRank

Top 43%8 citations

Xingzhao Wen, John Lalith Charles Richard, Zhifei Luo, Tri C. Nguyen, Chien-Ju Chen +14 more

The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.26.513573

Top 54%

0.312DataRank

Top 54%7 citations

Maryann E. Martone, Patrick R. Hof, Ed S. Lein, Aviv Regev, Giorgio A. Ascoli +94 more

Multiscale Spatial Transcriptomic Atlas of Human Basal Ganglia Cell-Type and Cellular Community Organization

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.02.691876

Top 70%

0.165DataRank

Top 70%2 citations

Zhiqun Tan, Ginny Wu, Sujan C. Das, Li Ren, Benjamin Esser +16 more

Cell-type-specific transposable element demethylation and TAD remodeling in the aging mouse brain

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.21.648266

Top 72%

0.110DataRank

Top 72%1 citations

Wei Tian, Amit Klein, Anna Bartlett, Hanqing Liu, Joseph R. Nery +28 more

Single-cell multiomic human brain atlas reveals regulatory drivers of cortical regionality

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.07.667992

Top 78%

0.104DataRank

Top 78%1 citations

Jinghui Song, Bing Yang, Chien-Ju Chen, Dinh Diep, Kimberly Y. Conklin +17 more

Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.25.489471

Top 78%

0.104DataRank

Top 78%1 citations

Nathan R. Zemke, Ziyin Chen, Ivan Jurić, Rong Hu, Ramya Raviram +15 more

Single nucleus multi-omics identifies human cortical cell regulatory genome diversity

Cell Genomics(2022)10.1016/j.xgen.2022.100107

N/A

0DataRank · unranked

163 citations

Hanqing Liu, Fangming Xie, Ethan J. Armand, Kimberly Siletti, Trygve E. Bakken +28 more

Single-cell epigenome analysis reveals age-associated decay of heterochromatin domains in excitatory neurons in the mouse brain

Cell Research(2022)10.1038/s41422-022-00719-6

N/A

0DataRank · unranked

89 citations

Maria Luisa Amaral, Chenxu Zhu, Steven F. Grieco, Xiaomeng Hou, Lin Lin +6 more

Systematic discovery and functional dissection of enhancers needed for cancer cell fitness and proliferation

Cell Reports(2022)10.1016/j.celrep.2022.111630

N/A

0DataRank · unranked

39 citations

Patrick C. Fiaux, Kai Zhang, Bin Li, Naoki Kubo, Shan Jiang +9 more

Age-dependent Lamin changes induce cardiac dysfunction via dysregulation of cardiac transcriptional programs

Nature Aging(2022)10.1038/s43587-022-00323-8

N/A

0DataRank · unranked

25 citations

Scott H. Skalak, Alexander J. Whitehead, James D. Hocker, Pranjali Beri, Georg Vogler +7 more

A spatial genome aligner for multiplexed DNA-FISH

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.25.485845

N/A

0DataRank · unranked

3 citations

Adam Jussila, Colin Kern, Quan Zhu, Bing Ren, Bojing Blair Jia

SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single cell Hi-C data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.05.502991

N/A

0DataRank · unranked

2 citations

Miao Yu, Xiaoqi Li, Chenxu Zhu, Yanxiao Zhang, Hongyu Yu +4 more

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.16.520793

N/A

0DataRank · unranked

0 citations

Hongyu Yu, Bojing Blair Jia, Adam Jussila, Chenxu Zhu, Jiawen Chen +8 more

Topologically associating domain boundaries are required for normal genome function

Communications Biology(2023)10.1038/s42003-023-04819-w

N/A

0DataRank · unranked

156 citations

Iros Barozzi, Yiwen Zhu, Rong Hu, Yanxiao Zhang, Bin Li +24 more

SALL1 enforces microglia-specific DNA binding and function of SMADs to establish microglia identity

Nature Immunology(2023)10.1038/s41590-023-01528-8

N/A

0DataRank · unranked

78 citations

Claudia Z. Han, Yi Zhou, Nathanael J. Spann, Payam A. Saisan, Zeyang Shen +17 more

Interpreting non-coding disease-associated human variants using single-cell epigenomics

Nature Reviews Genetics(2023)10.1038/s41576-023-00598-6

N/A

0DataRank · unranked

73 citations

Sebastian Preissl, Bing Ren, Kyle J. Gaulton

Droplet-based single-cell joint profiling of histone modifications and transcriptomes

Nature Structural & Molecular Biology(2023)10.1038/s41594-023-01060-1

N/A

0DataRank · unranked

65 citations

Chenxu Zhu, Zhaoning Wang, Melodi Tastemel, Lei Chang, Yang Eric Li +2 more

Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells

Nature Communications(2023)10.1038/s41467-023-42274-7

N/A

0DataRank · unranked

58 citations

Xingzhao Wen, John Lalith Charles Richard, Zhifei Luo, Tri C. Nguyen, Chien-Ju Chen +14 more

KDM6A Loss Triggers an Epigenetic Switch That Disrupts Urothelial Differentiation and Drives Cell Proliferation in Bladder Cancer

Cancer Research(2023)10.1158/0008-5472.can-22-1444

N/A

0DataRank · unranked

52 citations

Vladimir Makarov, Jennifer K. Bolzenius, Angela Halstead, Yvonne Parker, Allen Wang +13 more

A spatial genome aligner for resolving chromatin architectures from multiplexed DNA FISH

Nature Biotechnology(2023)10.1038/s41587-022-01568-9

N/A

0DataRank · unranked

38 citations

Adam Jussila, Colin Kern, Quan Zhu, Bing Ren, Bojing Blair Jia

Dynamic changes in P300 enhancers and enhancer-promoter contacts control mouse cardiomyocyte maturation

Developmental Cell(2023)10.1016/j.devcel.2023.03.020

N/A

0DataRank · unranked

29 citations

Nathan J. VanDusen, Yanchun Zhang, Yangpo Cao, Isha Sethi, Rong Hu +16 more

AP-1 signaling modulates cardiac fibroblast stress responses

Journal of Cell Science(2023)10.1242/jcs.261152

N/A

0DataRank · unranked

16 citations

Hamza Atcha, James D. Hocker, Bing Ren, Adam J. Engler, Alexander J. Whitehead

Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes

Cell Genomics(2023)10.1016/j.xgen.2023.100342

N/A

0DataRank · unranked

22 citations

Ethan J. Armand, Zizhen Yao, Hanqing Liu, Anna Bartlett, M. Margarita Behrens +14 more

SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single-cell Hi-C data

Briefings in Bioinformatics(2023)10.1093/bib/bbad315

N/A

0DataRank · unranked

10 citations

Miao Yu, Xiaoqi Li, Chenxu Zhu, Yanxiao Zhang, Hongyu Yu +6 more

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

Nature Communications(2023)10.1038/s41467-023-40658-3

N/A

0DataRank · unranked

10 citations

Hongyu Yu, Bojing Blair Jia, Adam Jussila, Chenxu Zhu, Jiawen Chen +10 more

Cell-type-specific 3D-genome organization and transcription regulation in the brain

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.04.570024

N/A

0DataRank · unranked

12 citations

Pu Zheng, Cosmos Yuqi Wang, Bojing Blair Jia, Nathan R. Zemke, Bing Ren +2 more

Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate neocortex

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.08.536119

N/A

0DataRank · unranked

4 citations

Ethan J. Armand, Wenliang Wang, Seo Yeon Lee, Jingtian Zhou, Yang Eric Li +23 more

Cell Type- and Tissue-specific Enhancers in Craniofacial Development

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.26.546603

N/A

0DataRank · unranked

2 citations

Kitt Paraiso, Maria Luisa Amaral, Michael Kosicki, Laura Cook, Fabrice Darbellay +26 more

Data from KDM6A Loss Triggers an Epigenetic Switch That Disrupts Urothelial Differentiation and Drives Cell Proliferation in Bladder Cancer

(2023)10.1158/0008-5472.c.6514364.v1

N/A

0DataRank · unranked

0 citations

Vladimir Makarov, Jennifer K. Bolzenius, Angela Halstead, Yvonne Parker, Allen Wang +13 more

Spatially organized cellular communities form the developing human heart

Nature(2024)10.1038/s41586-024-07171-z

N/A

0DataRank · unranked

188 citations

Robert Hu, Colin Kern, Qingquan Zhang, Tingyu Lu, Qixuan Ma +15 more

A fast, scalable and versatile tool for analysis of single-cell omics data

Nature Methods(2024)10.1038/s41592-023-02139-9

N/A

0DataRank · unranked

167 citations

Nathan R. Zemke, Ethan J. Armand, Bing Ren, Kai Zhang

H3K4me1 facilitates promoter-enhancer interactions and gene activation during embryonic stem cell differentiation

Molecular Cell(2024)10.1016/j.molcel.2024.02.030

N/A

0DataRank · unranked

90 citations

Poshen B. Chen, Rong Hu, Zhen Ye, Hiroyuki Sasaki, Bing Ren +1 more

Multi-modal analysis of human hepatic stellate cells identifies novel therapeutic targets for metabolic dysfunction-associated steatotic liver disease

Journal of Hepatology(2024)10.1016/j.jhep.2024.10.044

N/A

0DataRank · unranked

61 citations

Sara Brin Rosenthal, Xiao Liu, Charlene Miciano, Xiaomeng Hou, Michael Miller +17 more

Droplet Hi-C enables scalable, single-cell profiling of chromatin architecture in heterogeneous tissues

Nature Biotechnology(2024)10.1038/s41587-024-02447-1

N/A

0DataRank · unranked

55 citations

Yang Xie, Brett M. Taylor, Zhaoning Wang, Jiachen Sun, Ethan J. Armand +13 more

Dynamic enhancer landscapes in human craniofacial development

Nature Communications(2024)10.1038/s41467-024-46396-4

N/A

0DataRank · unranked

27 citations

Kitt Paraiso, Maria Luisa Amaral, Michael Kosicki, Laura Cook, Fabrice Darbellay +26 more

Role of H3K4 monomethylation in gene regulation

Current Opinion in Genetics & Development(2024)10.1016/j.gde.2024.102153

N/A

0DataRank · unranked

19 citations

Bing Ren, Zhaoning Wang

BORIS/CTCFL epigenetically reprograms clustered CTCF binding sites into alternative transcriptional start sites

Genome biology(2024)10.1186/s13059-024-03175-0

N/A

0DataRank · unranked

13 citations

Dharmendra Nath Bhatt, Samuel Rivero-Hinojosa, Md Tajmul, Liron M. Fedida, Emma Price +6 more

RUNX1 C-terminal mutations impair blood cell differentiation by perturbing specific enhancer-promoter networks

Blood Advances(2024)10.1182/bloodadvances.2023011484

N/A

0DataRank · unranked

10 citations

Zhengyu Liang, Do‐Hwan Lim, Poshen B. Chen, Cristina López Díaz, Kei‐ichiro Arimoto +6 more

Emerging Techniques in Spatial Multiomics: Fundamental Principles and Applications to Dermatology

Journal of Investigative Dermatology(2024)10.1016/j.jid.2024.09.006

N/A

0DataRank · unranked

4 citations

Bryan K. Sun, Ernest Y. Lee, Bing Ren, Bojing Blair Jia

First International Conference on Unconventional Animal Models of Alzheimer’s Disease and Aging

Journal of Alzheimer s Disease(2024)10.3233/jad-249004

N/A

0DataRank · unranked

4 citations

B. Maximiliano Garduño, Bing Ren, Xiangmin Xu, Patricia Cogram

Sensory Input, Sex, and Function Shape Hypothalamic Cell Type Development

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.23.576835

N/A

0DataRank · unranked

10 citations

Brandon L. Logeman, Kai Zhang, Celine Santiago, Noor Sohail, Serhiy Naumenko +5 more

Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.21.609075

N/A

0DataRank · unranked

4 citations

Niklas Kempynck, Nathan R. Zemke, Saroja Somasundaram, Seppe De Winter, Marcus Hooper +29 more

Droplet Hi-C for Fast and Scalable Profiling of Chromatin Architecture in Single Cells

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.18.590148

N/A

0DataRank · unranked

3 citations

Yang Xie, Brett M. Taylor, Zhaoning Wang, Jiachen Sun, Tuyet R. Tan +6 more

CRISPR tiling deletion screens reveal functional enhancers of neuropsychiatric risk genes and allelic compensation effects (ACE) on transcription

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.08.616922

N/A

0DataRank · unranked

2 citations

Lina Zheng, Lenka Maliskova, Tsz Wai Tam, Yifan Sun, Hongjiang Liu +6 more

Common DNA sequence variation influences 3-dimensional conformation of the human genome

UNC Libraries(2024)10.17615/kmnm-q097

N/A

0DataRank · unranked

0 citations

Tristin Liu, Bing Ren, Joshua Chiou, Yun Li, Ming Hu +8 more

Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex

Cell Genomics(2025)10.1016/j.xgen.2025.100879

N/A

0DataRank · unranked

16 citations

Niklas Kempynck, Nathan R. Zemke, Saroja Somasundaram, Seppe De Winter, Marcus Hooper +29 more

Specific targeting of brain endothelial cells using enhancer AAV vectors

Neuron(2025)10.1016/j.neuron.2025.03.031

N/A

0DataRank · unranked

7 citations

Oyshi Dey, Nayoon S. Kim, Wenhao Cao, Qiao Ye, Pan Gao +9 more

Multi-layered transcriptional control of glycogen metabolism coordinates thermogenic remodeling of white adipocytes in male mice

Nature Communications(2025)10.1038/s41467-025-67515-9

N/A

0DataRank · unranked

1 citations

Seo Yeon Lee, Nathan R. Zemke, Weiwei Fan, Yunqing Wang, Jorge R. Kawas Garza . +12 more

Efficient, scalable, and near-nucleotide-resolution profiling of protein occupancy in the genome with deaminases

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2425203122

N/A

0DataRank · unranked

1 citations

Bing Ren, Lei Chang

Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.09.632202

N/A

0DataRank · unranked

12 citations

Shuzhen Kuang, Shu Zhang, Abraham J. Horrillo, Kavitha S. Rao, Vasumathi Kameswaran +11 more

Author Correction: Droplet Hi-C enables scalable, single-cell profiling of chromatin architecture in heterogeneous tissues

Nature Biotechnology(2025)10.1038/s41587-025-02697-7

N/A

0DataRank · unranked

3 citations

Yang Xie, Brett M. Taylor, Zhaoning Wang, Jiachen Sun, Ethan J. Armand +13 more

Single-Cell Epigenomics Uncovers Heterochromatin Instability and Transcription Factor Dysfunction during Mouse Brain Aging

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.21.649585

N/A

0DataRank · unranked

2 citations

Sainath Mamde, Michael Miller, Xiaomeng Hou, Jessica Arzavala, Julia K. Osteen +24 more

Single cell multiomics and 3D genome architecture reveal novel pathways of human heart failure

medRxiv(2025)10.1101/2025.05.08.25327176

N/A

0DataRank · unranked

2 citations

Luca Tucciarone, Elie N. Farah, Lei Chang, Qian Yang, Thirupura S. Shankar +32 more

SnapHiC-D: a computational pipeline to identify differential chromatin contacts from single-cell Hi-C data

UNC Libraries(2025)10.17615/0hcp-4r09

N/A

0DataRank · unranked

0 citations

Ziyin Chen, Shreya Mishra, Hongyu Yu, Xiaoqi Li, Miao Yu +6 more

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

UNC Libraries(2025)10.17615/vmcs-0c51

N/A

0DataRank · unranked

0 citations

Caterina Strambio‐De‐Castillia, Lindsay Lee, Shreya Mishra, Bing Ren, Alistair N. Boettiger +10 more

Extensive folding variability between homologous chromosomes in mammalian cells

Molecular Systems Biology(2025)10.1038/s44320-025-00107-3

N/A

0DataRank · unranked

5 citations

Alexander Kukalev, Rieke Kempfer, Christoph J. Thieme, Guido Mastrobuoni, Julia Markowski +12 more

Chromothripsis drives the evolution of gene amplification in cancer

Nature(2020)10.1038/s41586-020-03064-z

N/A

0DataRank · unranked

477 citations

Simon Brunner, Rona Yaeger, Peter Ly, Yael Nechemia‐Arbely, Dong Hyun Kim +10 more

Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution

Nature Biotechnology(2020)10.1038/s41587-020-0643-8

N/A

0DataRank · unranked

51 citations

Anthony Cheng, Xi Gu, Bryan T. Harada, Miao Yu, Tong Wu +4 more

The MUC5B-associated variant rs35705950 resides within an enhancer subject to lineage- and disease-dependent epigenetic remodeling

JCI Insight(2020)10.1172/jci.insight.144294

N/A

0DataRank · unranked

37 citations

Sarah K. Sasse, Jonathan S. Kurche, Margaret Gruca, Jonathan Cardwell, Tsukasa Okamoto +12 more

An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.10.087585

N/A

0DataRank · unranked

28 citations

Sebastian Preissl, Xiaomeng Hou, Ziyang Zhang, Kai Zhang, Rongxin Fang +16 more

CTCF Promotes Long-range Enhancer-promoter Interactions and Lineage-specific Gene Expression in Mammalian Cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.21.001693

N/A

0DataRank · unranked

14 citations

Haruhiko Ishii, Xiong Xiong, Simona Bianco, Franz Meitinger, Rong Hu +11 more

Iterative Refinement of Cellular Identity from Single-Cell Data Using Online Learning

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.16.909861

N/A

0DataRank · unranked

9 citations

Sebastian Preissl, Chongyuan Luo, Rosa G. Castanon, Justin P. Sandoval, Angeline C. Rivkin +6 more

An assessment of histone-modification antibody quality

UNC Libraries(2020)10.17615/g8he-ng31

N/A

0DataRank · unranked

0 citations

Mitzi I. Kuroda, Andrey A. Gorchakov, Andreas Rechtsteiner, Peter V. Kharchenko, Daniel S. Day +27 more

A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome

UNC Libraries(2020)10.17615/rn2d-s510

N/A

0DataRank · unranked

0 citations

Bing Ren, Xu Zheng, Yun Li, Inkyung Jung, Cathy L. Barr +6 more

HUGIn: Hi-C Unifying Genomic Interrogator

UNC Libraries(2020)10.17615/mkb6-1p15

N/A

0DataRank · unranked

0 citations

Karen L. Mohlke, Xu Zheng, Bing Ren, Ming Hu, Joshua S. Martin +3 more

Comprehensive analysis of single cell ATAC-seq data with SnapATAC

Nature Communications(2021)10.1038/s41467-021-21583-9

N/A

0DataRank · unranked

488 citations

Sebastian Preissl, Yang Li, Xiaomeng Hou, Jacinta D. Lucero, Xinxin Wang +11 more

Joint profiling of histone modifications and transcriptome in single cells from mouse brain

Nature Methods(2021)10.1038/s41592-021-01060-3

N/A

0DataRank · unranked

318 citations

Yanxiao Zhang, Yang Eric Li, Jacinta D. Lucero, M. Margarita Behrens, Bing Ren +1 more

An atlas of gene regulatory elements in adult mouse cerebrum

Nature(2021)10.1038/s41586-021-03604-1

N/A

0DataRank · unranked

208 citations

Sebastian Preissl, Xiaomeng Hou, Ziyang Zhang, Kai Zhang, Yunjiang Qiu +23 more

CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains

Nature Genetics(2021)10.1038/s41588-021-00863-6

N/A

0DataRank · unranked

198 citations

Quan Zhu, Adam Jussila, Yuanyuan Han, Bogdan Bintu, Colin Kern +13 more

Cardiac cell type–specific gene regulatory programs and disease risk association

Science Advances(2021)10.1126/sciadv.abf1444

N/A

0DataRank · unranked

146 citations

Olivier Poirion, Fugui Zhu, Justin Buchanan, Kai Zhang, Joshua Chiou +13 more

Cell-autonomous inflammation of BRCA1-deficient ovarian cancers drives both tumor-intrinsic immunoreactivity and immune resistance via STING

Cell Reports(2021)10.1016/j.celrep.2021.109412

N/A

0DataRank · unranked

140 citations

David Barras, Marco Mina, Eleonora Ghisoni, Matteo Morotti, Evripidis Lanitis +30 more

SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data

Nature Methods(2021)10.1038/s41592-021-01231-2

N/A

0DataRank · unranked

96 citations

Armen Abnousi, Yanxiao Zhang, Guoqiang Li, Lindsay Lee, Ziyin Chen +9 more

ZNF143 mediates CTCF-bound promoter–enhancer loops required for murine hematopoietic stem and progenitor cell function

Nature Communications(2021)10.1038/s41467-020-20282-1

N/A

0DataRank · unranked

90 citations

Miao Yu, Roberto Tirado-Magallanes, Bin Li, Lingshi Kong, Mingrui Guo +10 more

Sequence logic at enhancers governs a dual mechanism of endodermal organ fate induction by FOXA pioneer factors

Nature Communications(2021)10.1038/s41467-021-26950-0

N/A

0DataRank · unranked

66 citations

Allen Wang, Dieter K. Lam, Nicholas K. Vinckier, Konstantinos–Dionysios Alysandratos, David A. Roberts +10 more

Parallel characterization of cis-regulatory elements for multiple genes using CRISPRpath

Science Advances(2021)10.1126/sciadv.abi4360

N/A

0DataRank · unranked

29 citations

Mengchi Wang, Bingkun Li, Kirsty Jamieson, Lina Zheng, Ian Jones +16 more

Improved epicardial cardiac fibroblast generation from iPSCs

Journal of Molecular and Cellular Cardiology(2021)10.1016/j.yjmcc.2021.11.011

N/A

0DataRank · unranked

16 citations

James D. Hocker, Bing Ren, Adam J. Engler, Alexander J. Whitehead

KDM1A maintains genome-wide homeostasis of transcriptional enhancers

Genome Research(2021)10.1101/gr.234559.118

N/A

0DataRank · unranked

31 citations

Katherine M. Bonefas, Patricia M. Garay, Emily Brookes, Yumie Murata-Nakamura, Robert S. Porter +4 more

Topologically Associating Domain Boundaries are Commonly Required for Normal Genome Function

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.06.443037

N/A

0DataRank · unranked

10 citations

Iros Barozzi, Yiwen Zhu, Rong Hu, Yanxiao Zhang, Bin Li +20 more

Type 1 diabetes risk genes mediate pancreatic beta cell survival in response to proinflammatory cytokines

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.29.466025

N/A

0DataRank · unranked

7 citations

Han Zhu, Mei-Lin Okino, Jian Yan, Ruth M. Elgamal, Naoki Nariai +15 more

MLL3/MLL4 Histone Methyltranferase Activity Dependent Chromatin Organization at Enhancers during Embryonic Stem Cell Differentiation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.17.435905

N/A

0DataRank · unranked

3 citations

Rong Hu, Zhen Ye, Bing Ren, Naoki Kubo

Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.25.465795

N/A

0DataRank · unranked

2 citations

Ethan J. Armand, Zizhen Yao, Hanqing Liu, Anna Bartlett, M. Margarita Behrens +14 more

Parallel Characterization of cis -Regulatory Elements for Multiple Genes Using CRISPRpath

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.19.431931

N/A

0DataRank · unranked

1 citations

Mengchi Wang, Bingkun Li, Kirsty Jamieson, Lina Zheng, Ian Jones +16 more

Bing Ren

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