Vineet Bafna

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

32.4Author DataRank

Indexed papers

8in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Sequence of the Human Genome

Science(2001)10.1126/science.1058040

Top 1%

11.2DataRank

Top 1%13680 citations

Mark D. Adams, Eugene W. Myers, Peter W. Li, Richard J. Mural, Granger G. Sutton +340 more

Papers

Driven by 60 papers — median percentile 93. Top paper: “The Sequence of the Human Genome”.

The Sequence of the Human Genome

Science(2001)10.1126/science.1058040

Top 1%

11.2DataRank

Top 1%13680 citations

Mark D. Adams, Eugene W. Myers, Peter W. Li, Richard J. Mural, Granger G. Sutton +340 more

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers

Nature Genetics(2020)10.1038/s41588-020-0678-2

N/A

9.9DataRank · unranked

641 citations

Nam Nguyen, Kristen M. Turner, Sihan Wu, Amit D. Gujar, Jens Luebeck +15 more

Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel

Nature Communications(2014)10.1038/ncomms4934

Top 2%

8.3DataRank

Top 2%460 citations

Jonathan Marchini, Peter Donnelly, Gerton Lunter, Jonathan L. Marchini, Simon Myers +364 more

Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation

Genome Research(2007)10.1101/gr.6427907

N/A

6.8DataRank · unranked

192 citations

Stephen Tanner, Navdeep Jaitly, Joshua N. Adkins, Mary Lipton, Robert Edwards +6 more

Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes

Genome Research(2008)10.1101/gr.074344.107

N/A

4.4DataRank · unranked

105 citations

Jamal Benhamida, Vipul Bhargava, Daniel Goodman, Elisabeth Kain, Ian Kerman +10 more

AmpliconReconstructor integrates NGS and optical mapping to resolve the complex structures of focal amplifications

Nature Communications(2020)10.1038/s41467-020-18099-z

N/A

2.3DataRank · unranked

98 citations

Ceyda Çoruh, Siavash R. Dehkordi, Joshua T. Lange, Kristen M. Turner, Viraj Deshpande +7 more

A deep population reference panel of tandem repeat variation

Nature Communications(2023)10.1038/s41467-023-42278-3

Top 13%

1.7DataRank

Top 13%76 citations

Yang Li, Ross DeVito, Nima Mousavi, Nichole Ma, Ibra Lujumba +17 more

Exploring the landscape of focal amplifications in cancer using AmpliconArchitect

Nature Communications(2019)10.1038/s41467-018-08200-y

N/A

0.889DataRank · unranked

374 citations

Jens Luebeck, Nam-Phuong D. Nguyen, Mehrdad Bakhtiari, Kristen M. Turner, Richard B. Schwab +4 more

ecDNA hubs drive cooperative intermolecular oncogene expression

Nature(2021)10.1038/s41586-021-04116-8

N/A

0.878DataRank · unranked

347 citations

Kathryn E. Yost, Liangqi Xie, Quanming Shi, Konstantin Helmsauer, Jens Luebeck +29 more

The evolutionary dynamics of extrachromosomal DNA in human cancers

Nature Genetics(2022)10.1038/s41588-022-01177-x

N/A

0.795DataRank · unranked

200 citations

John C. Rose, Celine Chen, Yuriy Pichugin, Liangqi Xie, Jun Tang +17 more

Extrachromosomal DNA in the cancerous transformation of Barrett’s oesophagus

Nature(2023)10.1038/s41586-023-05937-5

N/A

0.789DataRank · unranked

192 citations

Alvin Wei Tian Ng, Patricia C. Galipeau, Xiaohong Li, Carissa A. Sanchez, Annalise Katz‐Summercorn +15 more

Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2210991120

N/A

0.788DataRank · unranked

28 citations

Anugraha Raman, Sebastian Preissl, Jianfang Ning, Shaoping Wu, Tomoyuki Koga +22 more

CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing

Genome Research(2024)10.1101/gr.279131.124

N/A

0.768DataRank · unranked

34 citations

Matthew G. Jones, Jens Luebeck, Xinxin Bu, Hyerim Yi, King L. Hung +6 more

ARID1B, a molecular suppressor of erythropoiesis, is essential for the prevention of Monge’s disease

Experimental & Molecular Medicine(2022)10.1038/s12276-022-00769-1

N/A

0.752DataRank · unranked

20 citations

Andrew B. Caldwell, Srinivasan Ramachandran, Nathanael J. Spann, Ali Akbari, Francisco C. Villafuerte +8 more

Targeted profiling of human extrachromosomal DNA by CRISPR-CATCH

Nature Genetics(2022)10.1038/s41588-022-01190-0

N/A

0.725DataRank · unranked

125 citations

Jens Luebeck, Siavash R. Dehkordi, Caterina I. Colón, Rui Li, Ivy Tsz-Lo Wong +21 more

A deep population reference panel of tandem repeat variation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.09.531600

Top 29%

0.698DataRank

Top 29%12 citations

Yang Li, Ross DeVito, Nima Mousavi, Nichole Ma, Ibra Lujumba +17 more

Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastoma

Nature Genetics(2023)10.1038/s41588-023-01551-3

N/A

0.631DataRank · unranked

66 citations

Jens Luebeck, Sunita Sridhar, Ivy Tsz-Lo Wong, Deobrat Dixit, Shanqing Wang +43 more

Estimating repeat spectra and genome length from low-coverage genome skims with RESPECT

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009449

N/A

0.550DataRank · unranked

38 citations

Metin Balaban, Eleonora Rachtman, Behrouz Touri, Siavash Mirarab, Vineet Bafna +1 more

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer

Cell(2025)10.1016/j.cell.2025.10.043

N/A

0.529DataRank · unranked

33 citations

Tao Liu, Zhen Zhang, Bai Zhang, Vladislav A. Petyuk, Li Chen +55 more

Principles of ecDNA random inheritance drive rapid genome change and therapy resistance in human cancers

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.11.447968

N/A

0.425DataRank · unranked

16 citations

Celine Chen, Yuriy Pichugin, Liangqi Xie, Jun Tang, King L. Hung +14 more

The landscape of extrachromosomal circular DNA in medulloblastoma

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.18.464907

N/A

0.396DataRank · unranked

13 citations

Jens Luebeck, Sameena Wani, Ashutosh Tiwari, Meghana S. Pagadala, Shanqing Wang +26 more

Targeted profiling of human extrachromosomal DNA by CRISPR-CATCH

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.28.470285

N/A

0.396DataRank · unranked

13 citations

Jens Luebeck, Siavash R. Dehkordi, Ceyda Çoruh, Julie A. Law, William J. Greenleaf +4 more

Breakage fusion bridge cycles drive high oncogene copy number, but not intratumoral genetic heterogeneity or rapid cancer genome change

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.12.571349

N/A

0.300DataRank · unranked

4 citations

Ivy Tsz-Lo Wong, Jing Ni, Jens Luebeck, Kaiyuan Zhu, Gino Prasad +23 more

Extrachromosomal DNA associates with poor survival across a broad spectrum of childhood solid tumors

medRxiv(2025)10.1101/2025.07.22.24308163

N/A

0.208DataRank · unranked

3 citations

Sunita Sridhar, Eugene Yui‐Ching Chow, Rishaan Kenkre, Jonathan Kirkland, Aditi Dutta +23 more

Transcriptional immune suppression and upregulation of double stranded DNA damage and repair repertoires in ecDNA-containing tumors

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.24.537925

N/A

0.208DataRank · unranked

3 citations

Se‐Young Jo, Jens Luebeck, Howard Y. Chang, Sihan Wu, Paul S. Mischel +2 more

OMKar automates genome karyotyping using optical maps to identify constitutional abnormalities

Genome Research(2025)10.1101/gr.280536.125

N/A

0.169DataRank · unranked

2 citations

Zhaoyang Jia, Joey Estabrook, Jen Hauenstein, Neil R. Miller, Naz Güleray-Lafci +7 more

Rampant transcription replication conflict creates therapeutic vulnerability in extrachromosomal DNA containing cancers

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.29.586681

N/A

0DataRank · unranked

2 citations

Natasha E. Weiser, Guiping Wang, Sudhir Chowdhry, Ellis J. Curtis, Yanding Zhao +20 more

Reviewer #2 (Public Review): Transcriptional immune suppression and upregulation of double stranded DNA damage and repair repertoires in ecDNA-containing tumors

(2024)10.7554/elife.88895.2.sa1

N/A

0DataRank · unranked

0 citations

Se‐Young Jo, Jens Luebeck, Howard Y. Chang, Sihan Wu, Paul S. Mischel +2 more

Breakage fusion bridge cycles drive high oncogene number with moderate intratumoural heterogeneity

Nature Communications(2025)10.1038/s41467-025-56670-8

N/A

0DataRank · unranked

22 citations

Ivy Tsz-Lo Wong, Jing Ni, Jens Luebeck, Kaiyuan Zhu, Gino Prasad +25 more

Inhibition of human-HPV hybrid ecDNA enhancers reduces oncogene expression and tumor growth in oropharyngeal cancer

Nature Communications(2025)10.1038/s41467-025-57447-9

N/A

0DataRank · unranked

11 citations

Jens Luebeck, Kaiyuan Zhu, Joshua T. Lange, Roman Šášik, Chad Phillips +13 more

Extrachromosomal DNA micronucleation constrains tumour fitness and improves patient survival

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.15.648906

N/A

0DataRank · unranked

5 citations

Robin Xu, Jun Tang, Aditi Gnanasekar, Alexander M. Herrmann, Ivy Tsz-Lo Wong +56 more

OMKar automates genome karyotyping using optical maps to identify constitutional abnormalities

medRxiv(2025)10.1101/2025.02.13.25322211

N/A

0DataRank · unranked

0 citations

Zhaoyang Jia, Joey Estabrook, Jen Hauenstein, Neil R. Miller, Naz Güleray-Lafci +7 more

Enhancer activation from transposable elements in extrachromosomal DNA

Nature Cell Biology(2025)10.1038/s41556-025-01788-6

N/A

0DataRank · unranked

13 citations

Sedona E. Murphy, Matthew G. Jones, Quanming Shi, Aarohi Bhargava-Shah, Christy Luong +14 more

Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells

Nature Communications(2020)10.1038/s41467-020-14312-1

N/A

0DataRank · unranked

60 citations

Isaac A. Chaim, Jorge A. Benítez, Sebastian Markmiller, Alison D. Parisian, Robert F. Hevner +16 more

EcDNA hubs drive cooperative intermolecular oncogene expression

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.19.390278

N/A

0DataRank · unranked

15 citations

Kathryn E. Yost, Liangqi Xie, Sihan Wu, Joshua T. Lange, Connor V. Duffy +14 more

Variable Number Tandem Repeats mediate the expression of proximal genes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.25.114082

N/A

0DataRank · unranked

14 citations

Jonghun Park, Yuan-Chun Ding, Sharona Shleizer-Burko, Susan L. Neuhausen, Bjarni V. Halldórsson +4 more

Variable number tandem repeats mediate the expression of proximal genes

Nature Communications(2021)10.1038/s41467-021-22206-z

N/A

0DataRank · unranked

107 citations

Jonghun Park, Yuan-Chun Ding, Sharona Shleizer-Burko, Susan L. Neuhausen, Bjarni V. Halldórsson +4 more

Plasticity of Extrachromosomal and Intrachromosomal BRAF Amplifications in Overcoming Targeted Therapy Dosage Challenges

Cancer Discovery(2021)10.1158/2159-8290.cd-20-0936

N/A

0DataRank · unranked

78 citations

Jenna K. Minami, Arthur Huang, Siavash R. Dehkordi, Shirley H. Lomeli, Jens Luebeck +26 more

Extrachromosomal DNA in HPV-Mediated Oropharyngeal Cancer Drives Diverse Oncogene Transcription

Clinical Cancer Research(2021)10.1158/1078-0432.ccr-21-2484

N/A

0DataRank · unranked

45 citations

Nam Nguyen, Jens Luebeck, Laurel Ball, Andrey Finegersh, Shuling Ren +12 more

FaNDOM: Fast nested distance-based seeding of optical maps

Patterns(2021)10.1016/j.patter.2021.100248

N/A

0DataRank · unranked

16 citations

Jens Luebeck, Vineet Bafna, Siavash R. Dehkordi

Multiple mechanisms drive genomic adaptation to extreme O2 levels in Drosophila melanogaster

Nature Communications(2021)10.1038/s41467-021-21281-6

N/A

0DataRank · unranked

7 citations

Tsering Stobdan, Dan Zhou, Huiwen W. Zhao, Sergey Kryazhimskiy, Vineet Bafna +2 more

Heterozygous Tropomodulin 3 mice have improved lung vascularization after chronic hypoxia

Human Molecular Genetics(2021)10.1093/hmg/ddab291

N/A

0DataRank · unranked

3 citations

Pritesh Jain, Mingmei Xiong, Vineet Bafna, Jason X.‐J. Yuan, Gabriel G. Haddad +1 more

Comprehensive analysis of clustered mutations in cancer reveals recurrent APOBEC3 mutagenesis of ecDNA

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.27.445689

N/A

0DataRank · unranked

4 citations

Jens Luebeck, Mia Petljak, Vineet Bafna, Paul S. Mischel, Reuben S. Harris +2 more

Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA

Nature(2022)10.1038/s41586-022-04398-6

N/A

0DataRank · unranked

168 citations

Jens Luebeck, Mia Petljak, Azhar Khandekar, Mark Barnes, Tongwu Zhang +8 more

Extrachromosomal DNA in Cancer

Annual Review of Genomics and Human Genetics(2022)10.1146/annurev-genom-120821-100535

N/A

0DataRank · unranked

50 citations

Paul S. Mischel, Vineet Bafna

Detecting tandem repeat variants in coding regions using code-adVNTR

iScience(2022)10.1016/j.isci.2022.104785

N/A

0DataRank · unranked

29 citations

Mehrdad Bakhtiari, Bernt Popp, Michael S. Wiesener, Vineet Bafna, Jonghun Park

Variable number tandem repeats (VNTRs) as modifiers of breast cancer risk in carriers of BRCA1 185delAG

European Journal of Human Genetics(2022)10.1038/s41431-022-01238-z

N/A

0DataRank · unranked

5 citations

Aaron W. Adamson, Mehrdad Bakhtiari, Carmina S. Patrick, Jonghun Park, Yael Laitman +5 more

Quantifying the uncertainty of assembly-free genome-wide distance estimates and phylogenetic relationships using subsampling

Cell Systems(2022)10.1016/j.cels.2022.06.007

N/A

0DataRank · unranked

12 citations

Shahab Sarmashghi, Vineet Bafna, Siavash Mirarab, Eleonora Rachtman

FastViFi: Fast and accurate detection of (Hybrid) Viral DNA and RNA

NAR Genomics and Bioinformatics(2022)10.1093/nargab/lqac032

N/A

0DataRank · unranked

5 citations

Utkrisht Rajkumar, Nam Nguyen, Shahab Sarmashghi, Jens Luebeck, Jingbo Shang +2 more

Variable Number Tandem Repeats (VNTRs) as modifiers of breast cancer risk in carriers of BRCA1 185delAG

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.01.494371

N/A

0DataRank · unranked

0 citations

Aaron W. Adamson, Mehrdad Bakhtiari, Carmina S. Patrick, Jonghun Park, Yael Laitman +5 more

Epigenetic dysregulation from chromosomal transit in micronuclei

Nature(2023)10.1038/s41586-023-06084-7

N/A

0DataRank · unranked

118 citations

Duaa H. Al-Rawi, Bhargavi Dameracharla, Ramya Raviram, Bailey S.C.L. Jones, Stephanie Stransky +27 more

Transcriptional immune suppression and up-regulation of double-stranded DNA damage and repair repertoires in ecDNA-containing tumors

eLife(2023)10.7554/elife.88895

N/A

0DataRank · unranked

29 citations

Se‐Young Jo, Jens Luebeck, Howard Y. Chang, Sihan Wu, Paul S. Mischel +2 more

TRviz: a Python library for decomposing and visualizing tandem repeat sequences

Bioinformatics Advances(2023)10.1093/bioadv/vbad058

N/A

0DataRank · unranked

13 citations

Eli J. Kaufman, Paul N. Valdmanis, Vineet Bafna, Jonghun Park

Immortalization and transformation of primary cells mediated by engineered ecDNAs

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.25.546239

N/A

0DataRank · unranked

11 citations

Minsi Zhang, Rui Gao, Melissa A. Yao, Katarzyna M. Głuchowska, Y. Cendón Flórez +14 more

Coordinated inheritance of extrachromosomal DNA species in human cancer cells

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.18.549597

N/A

0DataRank · unranked

6 citations

Matthew G. Jones, Ivy Tsz-Lo Wong, Joshua T. Lange, Jens Luebeck, Elisa Scanu +14 more

Data from Extrachromosomal DNA in HPV-Mediated Oropharyngeal Cancer Drives Diverse Oncogene Transcription

(2023)10.1158/1078-0432.c.6531387.v1

Top 100%

0DataRank

Top 100%0 citations

Nam Nguyen, Jens Luebeck, Laurel Ball, Andrey Finegersh, Shuling Ren +12 more

Oncogenic extrachromosomal DNA identification using whole-genome sequencing from formalin-fixed glioblastomas

Annals of Oncology(2024)10.1016/j.annonc.2024.03.008

N/A

0DataRank · unranked

7 citations

Jens Luebeck, Andrew Rowan, Eva Grönroos, Valérie Barbe, Mark Fabian +6 more

Transcriptional immune suppression and up-regulation of double-stranded DNA damage and repair repertoires in ecDNA-containing tumors

eLife(2024)10.7554/elife.88895.3

N/A

0DataRank · unranked

4 citations

Se‐Young Jo, Jens Luebeck, Howard Y. Chang, Sihan Wu, Paul S. Mischel +2 more

CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.15.580594

N/A

0DataRank · unranked

3 citations

Matthew G. Jones, Jens Luebeck, Xinxin Bu, Hyerim Yi, King L. Hung +6 more

Vineet Bafna

Indexed papers

Top data-sharing exemplar

Papers