Alexandra P. Lewis

Agricultural and Biological SciencesBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

233Author DataRank

Indexed papers

88in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 88 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The diploid genome sequence of an Asian individual

Nature(2008)10.1038/nature07484

Top 1%

14.7DataRank

Top 1%964 citations

Wei Wang, Alexandra P. Lewis, Alan Hodgkinson, Geng Tian, Laurie Goodman +75 more

Papers

Driven by 437 papers — median percentile 69. Top paper: “The diploid genome sequence of an Asian individual”.

The diploid genome sequence of an Asian individual

Nature(2008)10.1038/nature07484

Top 1%

14.7DataRank

Top 1%964 citations

Wei Wang, Alexandra P. Lewis, Alan Hodgkinson, Geng Tian, Laurie Goodman +75 more

Search for the Standard Model Higgs Boson in the Diphoton Decay Channel with4.9 fb−1ofppCollision Data ats=7 TeVwith ATLAS

Physical Review Letters(2012)10.1103/physrevlett.108.111803

N/A

12.4DataRank · unranked

218 citations

B. Abbott, J. Abdallah, S. Abdel Khalek, A. A. Abdelalim, A. Abdesselam +3194 more

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

Genome Research(2008)10.1101/gr.073585.107

Top 1%

10.6DataRank

Top 1%1344 citations

Morana Vitezic, Abel Ureta-Vidal, Richard Durbin, Kerstin Lindblad‐Toh, Alexandra P. Lewis +1 more

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

TreeFam: a curated database of phylogenetic trees of animal gene families

Nucleic Acids Research(2006)10.1093/nar/gkj118

Top 1%

9.6DataRank

Top 1%542 citations

Alexandra P. Lewis

A map of human genome variation from population-scale sequencing

Nature(2010)10.1038/nature09534

Top 2%

9.1DataRank

Top 2%8109 citations

Min Hu, Yuan Chen, Matthew N. Bainbridge, Richard M. Durbin, Si Quang Le +319 more

TreeFam: 2008 Update

Nucleic Acids Research(2007)10.1093/nar/gkm1005

Top 2%

9.1DataRank

Top 2%347 citations

Z. Chen, A. Coghlan, P. Gartung, Y. Hu, R. Li +22 more

The Genomes of Oryza sativa: A History of Duplications

PLoS Biology(2005)10.1371/journal.pbio.0030038

Top 2%

9.0DataRank

Top 2%1040 citations

Jun Wang, Wei Lin, Songgang Li, Jun Zhou, Peixiang Ni +115 more

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

Nature(2016)10.1038/nature18964

Top 2%

8.6DataRank

Top 2%1785 citations

Alexandra P. Lewis, Mark Lipson, Iain Mathieson, Madhusudan Gujral, Fernando Racimo +86 more

A Draft Sequence of the Neandertal Genome

Science(2010)10.1126/science.1188021

Top 2%

8.6DataRank

Top 2%4581 citations

Johannes Krause, Adrian W. Briggs, Tomislav Maricic, Udo Stenzel, Martin Kircher +62 more

Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel

Nature Communications(2014)10.1038/ncomms4934

Top 2%

8.3DataRank

Top 2%460 citations

Jonathan Marchini, Peter Donnelly, Gerton Lunter, Jonathan L. Marchini, Simon Myers +364 more

The complete sequence of a human genome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.26.445798

Top 2%

8.2DataRank

Top 2%182 citations

Sergey Koren, Arang Rhie, Allison A. Regier, Andrey V. Bzikadze, Alla Mikheenko +97 more

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

Nature(2004)10.1038/nature03156

Top 2%

8.1DataRank

Top 2%456 citations

Gane Ka‐Shu Wong, Bin Liu, Jun Wang, Yong Zhang, Xu Yang +105 more

A Draft Sequence for the Genome of the Domesticated Silkworm ( Bombyx mori )

Science(2004)10.1126/science.1102210

Top 2%

8.0DataRank

Top 2%1187 citations

Qingyou Xia, Zeyang Zhou, Cheng Lu, Daojun Cheng, Fangyin Dai +94 more

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

Genome Research(2017)10.1101/gr.213611.116

Top 2%

8.0DataRank

Top 2%1305 citations

Thibaut Hourlier, Lon Phan, Hsiu-Chuan Chen, Paul A. Kitts, Terence D. Murphy +37 more

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

Science(2012)10.1126/science.1224344

Top 2%

7.8DataRank

Top 2%2137 citations

Martin Kircher, Marie-Theres Gansauge, Alexandra P. Lewis, Fernando Racimo, Swapan Mallick +31 more

The complete genome sequence of a Neanderthal from the Altai Mountains

Nature(2013)10.1038/nature12886

Top 2%

7.2DataRank

Top 2%2430 citations

Fernando Racimo, Nick Patterson, Flora Jay, Sriram Sankararaman, Susanna Sawyer +45 more

Genome sequence of a 45,000-year-old modern human from western Siberia

Nature(2014)10.1038/nature13810

Top 2%

7.1DataRank

Top 2%1099 citations

Alexandra P. Lewis, Priya Moorjani, Flora Jay, Sergey M. Slepchenko, Aleksei A. Bondarev +33 more

The complete sequence of a human genome

Science(2022)10.1126/science.abj6987

Top 3%

7.0DataRank

Top 3%3361 citations

Sergey Koren, Arang Rhie, Allison A. Regier, Andrey V. Bzikadze, Alla Mikheenko +94 more

Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects

Nature Communications(2018)10.1038/s41467-018-06159-4

Top 3%

6.6DataRank

Top 3%260 citations

Yossi Farjoun, Ilya Shlyakhter, Olga Krasheninina, Hyun Min Kang, Daniel P. Howrigan +16 more

The contribution of rare variation to prostate cancer heritability

Nature Genetics(2015)10.1038/ng.3446

N/A

6.3DataRank · unranked

158 citations

Nicholas Mancuso, Kristin A. Rand, Arti Tandon, Alexander Allen, Swapan Mallick +20 more

Great ape genetic diversity and population history

Nature(2013)10.1038/nature12228

Top 4%

5.8DataRank

Top 4%992 citations

Peter H. Sudmant, Jeffrey M. Kidd, Alexandra P. Lewis, Joanna L. Kelley, Belen Lorente-Galdos +83 more

Haplotype-resolved diverse human genomes and integrated analysis of structural variation

Science(2021)10.1126/science.abf7117

Top 4%

5.7DataRank

Top 4%812 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +60 more

Search for the Standard Model Higgs boson in the decay channel H→ZZ(⁎)→4ℓ with 4.8 fb−1 of pp collision data at s=7 TeV with ATLAS

Physics Letters B(2012)10.1016/j.physletb.2012.03.005

N/A

5.7DataRank · unranked

134 citations

B. Abbott, J. Abdallah, S. Abdel Khalek, A. Abdesselam, J. B. Hansen +3276 more

The Human Pangenome Project: a global resource to map genomic diversity

Nature(2022)10.1038/s41586-022-04601-8

Top 4%

5.6DataRank

Top 4%571 citations

Lucinda Antonacci-Fulton, Thibaut Hourlier, Heather A. Lawson, Julian K. Lucas, Adam M. Phillippy +36 more

Correlations between Immobilizing Ions and Suppressing Hysteresis in Perovskite Solar Cells

ACS Energy Letters(2016)10.1021/acsenergylett.6b00060

N/A

5.4DataRank · unranked

138 citations

Wenke Zhou, Wei Ma, Sheng Meng, Alexandra P. Lewis, Jing Wei +5 more

Chromosome-scale, haplotype-resolved assembly of human genomes

Nature Biotechnology(2020)10.1038/s41587-020-0711-0

N/A

5.3DataRank · unranked

207 citations

Arkarachai Fungtammasan, Mark J. P. Chaisson, Mike Chou, Anthony Schmitt, Xiang Zhou +18 more

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x

Top 4%

5.1DataRank

Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Structural basis of salicylic acid perception by Arabidopsis NPR proteins

Nature(2020)10.1038/s41586-020-2596-y

N/A

5.0DataRank · unranked

170 citations

John Withers, Alexandra P. Lewis, Paul J. Zwack, Domnița-Valeria Rusnac, Hui Shi +7 more

Pangenome graph construction from genome alignments with Minigraph-Cactus

Nature Biotechnology(2023)10.1038/s41587-023-01793-w

N/A

5.0DataRank · unranked

318 citations

Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao +94 more

Segmental duplications and their variation in a complete human genome

Science(2022)10.1126/science.abj6965

Top 5%

4.6DataRank

Top 5%380 citations

Xavi Guitart, Philip C. Dishuck, Ludovica Mercuri, William T. Harvey, Ariel Gershman +15 more

Combined search for the Standard Model Higgs boson inppcollisions ats=7 TeVwith the ATLAS detector

Physical Review D(2012)10.1103/physrevd.86.032003

N/A

4.5DataRank · unranked

150 citations

T. Abajyan, B. Abbott, J. Abdallah, S. Abdel Khalek, A. A. Abdelalim +2932 more

The complete sequence of a human Y chromosome

Nature(2023)10.1038/s41586-023-06457-y

Top 5%

4.1DataRank

Top 5%464 citations

Sergey Nurk, Mark J. P. Chaisson, Savannah J. Hoyt, Dylan J. Taylor, Nicolas Altemose +82 more

Fast alignment and preprocessing of chromatin profiles with Chromap

Nature Communications(2021)10.1038/s41467-021-26865-w

N/A

4.0DataRank · unranked

200 citations

Li Song, Xiaotao Wang, Haoyu Cheng, Chenfei Wang, Clifford A. Meyer +7 more

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/072116

Top 6%

3.8DataRank

Top 6%118 citations

Tina A. Graves-Lindsay, Thibaut Hourlier, Lon Phan, Hsiu-Chuan Chen, Paul A. Kitts +34 more

Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility

Science(2020)10.1126/science.abc6617

Top 6%

3.6DataRank

Top 6%201 citations

R. Alan Harris, Marina Haukness, Ian T. Fiddes, Shwetha C. Murali, Jason D. Fernandes +55 more

Development of a lateral flow fluorescent microsphere immunoassay for the determination of sulfamethazine in milk

Analytical and Bioanalytical Chemistry(2013)10.1007/s00216-013-7150-4

N/A

3.3DataRank · unranked

51 citations

Alexandra P. Lewis, Han Zhang, Suxia Zhang, Weimin Shi, Jianzhong Shen +2 more

Measurement of the inclusive isolated prompt photon cross section inppcollisions ats=7 TeVwith the ATLAS detector

Physical Review D(2011)10.1103/physrevd.83.052005

N/A

3.3DataRank · unranked

196 citations

B. Abbott, J. Abdallah, A. A. Abdelalim, A. Abdesselam, J. B. Hansen +3136 more

Snap: an integrated SNP annotation platform

Nucleic Acids Research(2006)10.1093/nar/gkl969

Top 7%

3.1DataRank

Top 7%54 citations

Christopher A. Bristow, Alexandra P. Lewis, Søren Vang, Yafeng Hu, Lars Bolund +2 more

Phylogeny and Classification of Paris (Melanthiaceae) Inferred from DNA Sequence Data

Annals of Botany(2006)10.1093/aob/mcl095

N/A

3.0DataRank · unranked

76 citations

PETER W. FRITSCH, Alexandra P. Lewis, TIAOJIANG XIAO, ZHEKUN ZHOU, Zhe‐Kun Zhou +1 more

Limits on the production of the standard model Higgs boson in pp collisions at $\sqrt{s} = 7$ TeV with the ATLAS detector

The European Physical Journal C(2011)10.1140/epjc/s10052-011-1728-9

N/A

3.0DataRank · unranked

55 citations

G. Aad, B. Abbott, J. Abdallah, A. A. Abdelalim, A. Abdesselam +3041 more

A Draft Human Pangenome Reference

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.09.499321

Top 8%

2.9DataRank

Top 8%74 citations

Mobin Asri, Daniel Doerr, Eoghan Harrington, Hickey, Glenn, Julian K. Lucas +47 more

Effect of CYP3A4*1G on the fentanyl consumption for intravenous patient-controlled analgesia after total abdominal hysterectomy in Chinese Han population

Journal of Clinical Pharmacy and Therapeutics(2011)10.1111/j.1365-2710.2011.01268.x

N/A

2.7DataRank · unranked

51 citations

Q-X. Chen, Y. Hu, S-J. Wu, L-Y. Tang, W-Y. Gong +7 more

Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags

Genome Biology(2007)10.1186/gb-2007-8-4-r45

Top 8%

2.7DataRank

Top 8%75 citations

Susanna Cirera, Jakob Hedegaard, Michael J. Gilchrist, Claus Jørgensen, Karsten Scheibye-Knudsen +34 more

Comprehensive identification of transposable element insertions using multiple sequencing technologies

Nature Communications(2021)10.1038/s41467-021-24041-8

N/A

2.6DataRank · unranked

109 citations

Rebeca Borges-Monroy, Vinayak V. Viswanadham, Soohyun Lee, Alexandra P. Lewis, Eunjung Alice Lee +2 more

Intramolecular C–F and C–H bond cleavage promoted by butadienyl heavy Grignard reagents

Nature Communications(2014)10.1038/ncomms5508

N/A

2.4DataRank · unranked

58 citations

Baosheng Wei, Ling Xu, Jian Pei, Zhenfeng Xi, Xiaoye Wang +2 more

A high-quality bonobo genome refines the analysis of hominid evolution

Nature(2021)10.1038/s41586-021-03519-x

Top 10%

2.1DataRank

Top 10%92 citations

Claudia Rita Catacchio, LaDeana Hillier, David Porubsky, Ruiyang Li, Arvis Sulovari +34 more

Genome Graphs

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/101378

N/A

2.1DataRank · unranked

44 citations

Hickey, Glenn, Nicholas F. Parrish, Sean Blum, Abram Connelly, Alexander T Dilthey +22 more

Increased mutation and gene conversion within human segmental duplications

Nature(2023)10.1038/s41586-023-05895-y

N/A

2.1DataRank · unranked

114 citations

Philip C. Dishuck, William T. Harvey, William S. DeWitt, Xavi Guitart, Michael E. Goldberg +108 more

Differential DNA methylation of vocal and facial anatomy genes in modern humans

Nature Communications(2020)10.1038/s41467-020-15020-6

N/A

2.1DataRank · unranked

133 citations

Malka Nissim-Rafinia, Lily Agranat-Tamir, Genevieve Housman, Raquel García-Pérez, Esther Lizano +39 more

Antimicrobial Resistance and Virulence Gene Profiles of Methicillin-Resistant and -Susceptible Staphylococcus aureus From Food Products in Denmark

Frontiers in Microbiology(2019)10.3389/fmicb.2019.02681

N/A

2.0DataRank · unranked

42 citations

Paal Skytt Andersen, Marc Stegger, Raphael N. Sieber, Hanne Ingmer, Nicholas Staubrand +3 more

Identifying and correcting repeat-calling errors in nanopore sequencing of telomeres

Genome Biology(2022)10.1186/s13059-022-02751-6

N/A

1.8DataRank · unranked

72 citations

Michael K. Slevin, Patrick D. McGillivray, Alexandra P. Lewis, Kar‐Tong Tan, Kar-Tong Tan

The Sequence Alignment/Map format and SAMtools

Bioinformatics(2009)10.1093/bioinformatics/btp352

N/A

1.7DataRank · unranked

66179 citations

Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Richard Durbin +5 more

Fast and accurate short read alignment with Burrows–Wheeler transform

Bioinformatics(2009)10.1093/bioinformatics/btp324

N/A

1.7DataRank · unranked

62117 citations

Richard Durbin, Alexandra P. Lewis

htsget: a protocol for securely streaming genomic data

Bioinformatics(2018)10.1093/bioinformatics/bty492

N/A

1.5DataRank · unranked

28 citations

Mike Lin, C H Albach, Kerstin Lindblad‐Toh, Marina Gourtovaia, David Glazer +26 more

Minimap2: pairwise alignment for nucleotide sequences

Bioinformatics(2018)10.1093/bioinformatics/bty191

N/A

1.5DataRank · unranked

16325 citations

Alexandra P. Lewis

Twelve years of SAMtools and BCFtools

GigaScience(2021)10.1093/gigascience/giab008

N/A

1.4DataRank · unranked

15177 citations

James K. Bonfield, Jennifer Liddle, John Marshall, Valeriu Ohan, Martin O Pollard +6 more

Demonstration of phycobilisome mobility by the time- and space-correlated fluorescence imaging of a cyanobacterial cell

Biochimica et Biophysica Acta (BBA) - Bioenergetics(2007)10.1016/j.bbabio.2006.11.012

N/A

1.4DataRank · unranked

35 citations

Zuqi Su, Alexandra P. Lewis, Juanjuan Feng, Jie Xie, Andong Xia +3 more

Levels of Metalloproteinase (MMP-3, MMP-9), NF-kB Ligand (RANKL), and Nitric Oxide (NO) in Peripheral Blood of Osteoarthritis (OA) Patients

Clinical Laboratory(2013)10.7754/clin.lab.2011.110823

N/A

1.4DataRank · unranked

18 citations

Liqin Li, Honghang Yang, Xuchun Xu, Yongjian Yuan, Dan Wang +3 more

Fast and accurate long-read alignment with Burrows–Wheeler transform

Bioinformatics(2010)10.1093/bioinformatics/btp698

N/A

1.4DataRank · unranked

12767 citations

Richard Durbin, Alexandra P. Lewis

Structurally divergent and recurrently mutated regions of primate genomes

Cell(2024)10.1016/j.cell.2024.01.052

Top 15%

1.4DataRank

Top 15%72 citations

William T. Harvey, David Porubsky, Katherine M. Munson, Kendra Hoekzema, Alexandra P. Lewis +29 more

Observation of a new particle in the search for the Standard Model Higgs boson with the ATLAS detector at the LHC

Physics Letters B(2012)10.1016/j.physletb.2012.08.020

N/A

1.4DataRank · unranked

10654 citations

T. Abajyan, B. Abbott, J. Abdallah, S. Abdel Khalek, J. B. Hansen +3083 more

Pseudomonas aeruginosa-mannose–sensitive hemagglutinin inhibits epidermal growth factor receptor signaling pathway activation and induces apoptosis in bladder cancer cells in vitro and in vivo

Urologic Oncology: Seminars and Original Investigations(2014)10.1016/j.urolonc.2013.02.013

N/A

1.4DataRank · unranked

20 citations

Wei Xiao, Yang Yang, Alexandra P. Lewis, Ding Xia, Gan Yu +9 more

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

Bioinformatics(2011)10.1093/bioinformatics/btr509

N/A

1.3DataRank · unranked

7294 citations

Alexandra P. Lewis

Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/269316

Top 16%

1.3DataRank

Top 16%34 citations

Yossi Farjoun, David Larson, Olga Krasheninina, Hyun Min Kang, Daniel P. Howrigan +19 more

Identifying centromeric satellites with dna-brnn

Bioinformatics(2019)10.1093/bioinformatics/btz264

N/A

1.3DataRank · unranked

34 citations

Alexandra P. Lewis

Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM

arXiv (Cornell University)(2014)10.6084/m9.figshare.963153.v1

N/A

1.3DataRank · unranked

5775 citations

Alexandra P. Lewis

Complete sequencing of ape genomes

Nature(2025)10.1038/s41586-025-08816-3

Top 16%

1.3DataRank

Top 16%128 citations

Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar +123 more

Measurements of the electron and muon inclusive cross-sections in proton–proton collisions at s=7 TeV with the ATLAS detector

Physics Letters B(2012)10.1016/j.physletb.2011.12.054

N/A

1.3DataRank · unranked

59 citations

B. Abbott, J. Abdallah, A. Abdesselam, J. B. Hansen, B. Abi +3159 more

CRISPAltRations: A validated cloud-based approach for interrogation of double-strand break repair mediated by CRISPR genome editing

Molecular Therapy - Methods & Clinical Development(2021)10.1016/j.omtm.2021.03.024

N/A

1.3DataRank · unranked

37 citations

Rolf Turk, Alexandra P. Lewis, Nathan Roberts, Garrett R. Rettig, Ashley M. Jacobi +9 more

EPGD: a comprehensive web resource for integrating and displaying eukaryotic paralog/paralogon information

Nucleic Acids Research(2007)10.1093/nar/gkm924

Top 17%

1.2DataRank

Top 17%16 citations

Yugang Sun, Z. Wang, H. Fan, C. Wang, D. Yang +10 more

Efficient Architecture-Aware Acceleration of BWA-MEM for Multicore Systems

2019 IEEE International Parallel and Distributed Processing Symposium (IPDPS)(2019)10.1109/ipdps.2019.00041

N/A

1.2DataRank · unranked

2676 citations

Sanchit Misra, Alexandra P. Lewis, Srinivas Aluru, Md. Vasimuddin

Comprehensive Characterizations of Immune Receptor Repertoire in Tumors and Cancer Immunotherapy Studies

Cancer Immunology Research(2022)10.1158/2326-6066.cir-21-0965

Top 17%

1.2DataRank

Top 17%29 citations

Zhangyi Ouyang, David Cohen, Yang Cao, Jennifer Altreuter, Gali Bai +7 more

Evaluating the contribution of rare variants to type 2 diabetes and related traits using pedigrees

Proceedings of the National Academy of Sciences(2017)10.1073/pnas.1705859115

N/A

1.2DataRank · unranked

36 citations

Alisa Manning, Marcio Almeida, Matthew Zawistowski, Katharina Domschke, Tanya M. Teslovich +82 more

Haplotype frequencies in a sub-region of chromosome 19q13.3, related to risk and prognosis of cancer, differ dramatically between ethnic groups

BMC Medical Genetics(2009)10.1186/1471-2350-10-20

N/A

1.2DataRank · unranked

18 citations

Thomas Mailund, Alexandra P. Lewis, Jun Wang, Anne Tjønneland, Ulla Vogel +4 more

AGC: compact representation of assembled genomes with fast queries and updates

Bioinformatics(2023)10.1093/bioinformatics/btad097

N/A

1.1DataRank · unranked

27 citations

Agnieszka Danek, Alexandra P. Lewis, Sebastian Deorowicz

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

Nature Biotechnology(2019)10.1038/s41587-019-0217-9

N/A

1.1DataRank · unranked

1912 citations

Paul Peluso, William J. Rowell, Pi-Chuan Chang, Richard J. Hall, Gregory T. Concepcion +24 more

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

Bioinformatics(2016)10.1093/bioinformatics/btw152

N/A

1.1DataRank · unranked

1705 citations

Alexandra P. Lewis

Pangenome Graph Construction from Genome Alignment with Minigraph-Cactus

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.06.511217

N/A

1.1DataRank · unranked

34 citations

Jean Monlong, Evan E. Eichler, Maria Nattestad, Jordan M. Eizenga, Yan Gao +5 more

Fast and accurate long-read assembly with wtdbg2

Nature Methods(2019)10.1038/s41592-019-0669-3

N/A

1.1DataRank · unranked

1561 citations

Alexandra P. Lewis, Jue Ruan

Complex genetic variation in nearly complete human genomes

Nature(2025)10.1038/s41586-025-09140-6

Top 19%

1.1DataRank

Top 19%83 citations

Peter Ebert, Peter A. Audano, Mark Loftus, David Porubsky, Feyza Yilmaz +62 more

Barium Dibenzopentalenide as a Main‐Group Metal η8 Complex: Facile Synthesis from 1,4‐Dilithio‐1,3‐butadienes and Ba[N(SiMe3)2]2, Structural Characterization, and Reaction Chemistry

Angewandte Chemie(2013)10.1002/ange.201305254

N/A

1.1DataRank · unranked

19 citations

Baosheng Wei, Ling Xu, Wen‐Xiong Zhang, Zhenfeng Xi, Alexandra P. Lewis

New strategies to improve minimap2 alignment accuracy

Bioinformatics(2021)10.1093/bioinformatics/btab705

N/A

1.1DataRank · unranked

1319 citations

Alexandra P. Lewis

A draft human pangenome reference

Yearbook of Paediatric Endocrinology(2023)10.1530/ey.20.12.1

Top 19%

1.1DataRank

Top 19%29 citations

Mobin Asri, Evan E. Eichler, Daniel Doerr, Eoghan Harrington, Hickey, Glenn +12 more

Toward better understanding of artifacts in variant calling from high-coverage samples

Bioinformatics(2014)10.1093/bioinformatics/btu356

N/A

1.0DataRank · unranked

1046 citations

Alexandra P. Lewis

Haplotype-resolved assembly of diploid genomes without parental data

Nature Biotechnology(2022)10.1038/s41587-022-01261-x

N/A

1.0DataRank · unranked

907 citations

Erich D. Jarvis, Olivier Fédrigo, Lara Urban, Neil J. Gemmell, Alexandra P. Lewis +2 more

A survey of sequence alignment algorithms for next-generation sequencing

Briefings in Bioinformatics(2010)10.1093/bib/bbq015

N/A

1.0DataRank · unranked

904 citations

N. Homer, Alexandra P. Lewis, Natalie Homer

A polymer scaffold for self-healing perovskite solar cells

Nature Communications(2016)10.1038/ncomms10228

N/A

0.974DataRank · unranked

660 citations

Jing Wei, Alexandra P. Lewis, Yin Yan, Wenke Zhou, Dapeng Yu +3 more

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

Nature Biotechnology(2008)10.1038/nbt1414

N/A

0.971DataRank · unranked

647 citations

Vardhman K. Rakyan, Daniel J. Turner, David B. Jaffe, Alexandra P. Lewis, Eugene Kulesha +19 more

Dysbiosis of gut microbiome affecting small intestine morphology and immune balance: a rhesus macaque model

Zool. Res.(2020)10.24272/j.issn.2095-8137.2020.004

N/A

0.951DataRank · unranked

25 citations

Li Nan, Wang Jing-Jing, Huang Xing, Zheng Hui-Wen, He Zhan-Long +19 more

Robust haplotype-resolved assembly of diploid individuals without parental data

arXiv (Cornell University)(2021)10.48550/arxiv.2109.04785

N/A

0.945DataRank · unranked

16 citations

Erich D. Jarvis, Olivier Fédrigo, Klaus‐Peter Koepfli, Lara Urban, Neil J. Gemmell +2 more

Three-dimensional genome structures of single diploid human cells

Science(2018)10.1126/science.aat5641

N/A

0.943DataRank · unranked

538 citations

Dong Xing, Chi-Han Chang, Alexandra P. Lewis, X. Sunney Xie, Xiaohui Xie +1 more

The complete sequence of a human Y chromosome

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.01.518724

Top 22%

0.934DataRank

Top 22%42 citations

Sergey Nurk, Savannah J. Hoyt, Dylan J. Taylor, Nicolas Altemose, Paul W. Hook +79 more

The design and construction of reference pangenome graphs with minigraph

Genome Biology(2020)10.1186/s13059-020-02168-z

N/A

0.930DataRank · unranked

493 citations

Xiaowen Feng, Chong Chu, Alexandra P. Lewis

New Variants of Porcine Epidemic Diarrhea Virus, China, 2011

Emerging Infectious Diseases(2012)10.3201/eid1803.120002

N/A

0.930DataRank · unranked

493 citations

Alexandra P. Lewis, Yunbo Liu, Yongfei Pan, Feng Deng, Yanhua Song +3 more

Jet energy measurement with the ATLAS detector in proton-proton collisions at $\sqrt{\mathrm{s}}=7\ \mathrm{TeV}$

The European Physical Journal C(2013)10.1140/epjc/s10052-013-2304-2

N/A

0.912DataRank · unranked

435 citations

G. Aad, B. Abbott, J. Abdallah, A. A. Abdelalim, A. Abdesselam +3086 more

Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI)

Science(2017)10.1126/science.aak9787

N/A

0.907DataRank · unranked

423 citations

Dong Xing, Longzhi Tan, Alexandra P. Lewis, Guangyu Zhou, Lei Huang +3 more

Exploring single-sample SNP and INDEL calling with whole-genomede novoassembly

Bioinformatics(2012)10.1093/bioinformatics/bts280

N/A

0.907DataRank · unranked

421 citations

Alexandra P. Lewis

Electron performance measurements with the ATLAS detector using the 2010 LHC proton-proton collision data

The European Physical Journal C(2012)10.1140/epjc/s10052-012-1909-1

N/A

0.905DataRank · unranked

417 citations

G. Aad, B. Abbott, J. Abdallah, A. A. Abdelalim, A. Abdesselam +3096 more

Exploring gene content with pangene graphs

Bioinformatics(2024)10.1093/bioinformatics/btae456

N/A

0.899DataRank · unranked

30 citations

Maximillian G. Marin, Maha R. Farhat, Alexandra P. Lewis

Complete Genomes Reveal Signatures of Demographic and Genetic Declines in the Woolly Mammoth

Current Biology(2015)10.1016/j.cub.2015.04.007

N/A

0.896DataRank · unranked

392 citations

Swapan Mallick, Pontus Skoglund, Jacob Enk, Nicholas Mancuso, Alexandra P. Lewis +8 more

A direct characterization of human mutation based on microsatellites

Nature Genetics(2012)10.1038/ng.2398

N/A

0.895DataRank · unranked

388 citations

Agnar Helgason, Gisli Masson, Sigríður Sunna Ebenesersdóttir, Alexandra P. Lewis, Swapan Mallick +9 more

Rapid Detection of Mycobacterium tuberculosis and Pyrazinamide Susceptibility Related topncAMutations in Sputum Specimens through an Integrated Gene-to-Protein Function Approach

Journal of Clinical Microbiology(2014)10.1128/jcm.02285-13

N/A

0.884DataRank · unranked

8 citations

Jun Chen, Man Zhou, Xuelei Geng, Junping Yu, Weihua Wang +4 more

Performance of the ATLAS Trigger System in 2010

The European Physical Journal C(2012)10.1140/epjc/s10052-011-1849-1

N/A

0.880DataRank · unranked

352 citations

G. Aad, B. Abbott, J. Abdallah, A. A. Abdelalim, A. Abdesselam +3093 more

compleasm: a faster and more accurate reimplementation of BUSCO

Bioinformatics(2023)10.1093/bioinformatics/btad595

N/A

0.873DataRank · unranked

335 citations

Alexandra P. Lewis, Neng Huang

Performance of missing transverse momentum reconstruction in proton-proton collisions at $\sqrt{s} = 7~\mbox{TeV}$ with ATLAS

The European Physical Journal C(2012)10.1140/epjc/s10052-011-1844-6

N/A

0.869DataRank · unranked

327 citations

G. Aad, B. Abbott, J. Abdallah, A. A. Abdelalim, A. Abdesselam +3105 more

Extremely low-coverage sequencing and imputation increases power for genome-wide association studies

Nature Genetics(2012)10.1038/ng.2283

N/A

0.868DataRank · unranked

326 citations

Nicholas Mancuso, Paul J. McLaren, Kiran Garimella, Noah Zaitlen, Alexandra P. Lewis +23 more

Genome-wide enhancer-gene regulatory maps link causal variants to target genes underlying human cancer risk

Nature Communications(2023)10.1038/s41467-023-41690-z

N/A

0.861DataRank · unranked

32 citations

Can Chen, Zequn Lu, Shuoni Chen, Ming Zhang, Yimin Cai +24 more

HTSlib - C library for reading/writing high-throughput sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.16.423064

N/A

0.860DataRank · unranked

15 citations

John Marshall, Chris O’Sullivan, Alexandra P. Lewis, Valeriu Ohan, Andrew Whitwham +3 more

Lactic Acid: No Longer an Inert and End-Product of Glycolysis

Physiology(2017)10.1152/physiol.00016.2017

N/A

0.856DataRank · unranked

299 citations

Alexandra P. Lewis, Jianghua Chen, Qi Qian, Shiren Sun

Luminosity determination in pp collisions at $\sqrt{s} = 7$ TeV using the ATLAS detector at the LHC

The European Physical Journal C(2011)10.1140/epjc/s10052-011-1630-5

N/A

0.854DataRank · unranked

296 citations

G. Aad, B. Abbott, J. Abdallah, A. A. Abdelalim, A. Abdesselam +3066 more

Targeting a cytokine checkpoint enhances the fitness of armored cord blood CAR-NK cells

Blood(2021)10.1182/blood.2020007748

N/A

0.848DataRank · unranked

284 citations

Rafet Basar, Elif Gokdemir, Natalia Baran, Nadima Uprety, Ana Karen Nunez Cortes +56 more

Evidence for a Particle Produced in Association with Weak Bosons and Decaying to a Bottom-Antibottom Quark Pair in Higgs Boson Searches at the Tevatron

Physical Review Letters(2012)10.1103/physrevlett.109.071804

N/A

0.842DataRank · unranked

273 citations

V. M. Abazov, B. Abbott, B. S. Acharya, M. Adams, T. Adams +929 more

No evidence that selection has been less effective at removing deleterious mutations in Europeans than in Africans

Nature Genetics(2015)10.1038/ng.3186

N/A

0.825DataRank · unranked

244 citations

Daniel Balick, Alexandra P. Lewis, Ankit Malhotra, Shamil R. Sunyaev, David Reich +2 more

Targeted long-read sequencing identifies missing disease-causing variation

The American Journal of Human Genetics(2021)10.1016/j.ajhg.2021.06.006

N/A

0.825DataRank · unranked

243 citations

Arvis Sulovari, Tianyun Wang, Hailey Loucks, Kendra Hoekzema, Katherine M. Munson +45 more

Nitrilases in nitrile biocatalysis: recent progress and forthcoming research

Microbial Cell Factories(2012)10.1186/1475-2859-11-142

N/A

0.806DataRank · unranked

215 citations

Zhen-Ming Lu, Alexandra P. Lewis, Zhe-Min Zhou, Zheng-Hong Xu, Jin‐Song Gong +5 more

Full-resolution HLA and KIR gene annotations for human genome assemblies

Genome Research(2024)10.1101/gr.278985.124

Top 25%

0.804DataRank

Top 25%27 citations

Li Song, Alexandra P. Lewis, Ying Zhou

The design and construction of reference pangenome graphs

arXiv (Cornell University)(2020)10.48550/arxiv.2003.06079

N/A

0.801DataRank · unranked

15 citations

Xiaowen Feng, Chong Chu, Alexandra P. Lewis

pIRS: Profile-based Illumina pair-end reads simulator

Bioinformatics(2012)10.1093/bioinformatics/bts187

N/A

0.801DataRank · unranked

207 citations

Jianying Yuan, Yujian Shi, Jianliang Lu, Anders D. Børglum, Claire Churchhouse +9 more

Metagenome assembly of high-fidelity long reads with hifiasm-meta

Nature Methods(2022)10.1038/s41592-022-01478-3

N/A

0.794DataRank · unranked

198 citations

Haoyu Cheng, Alexandra P. Lewis, Daniel M. Portik, Xiaowen Feng

Genome assembly in the telomere-to-telomere era

Nature Reviews Genetics(2024)10.1038/s41576-024-00718-w

N/A

0.789DataRank · unranked

191 citations

Richard Durbin, Alexandra P. Lewis

Draft Genome Sequence of the Cellulolytic Bacterium Clavibacter sp. CF11, a Strain Producing Cold-Active Cellulase

Genome Announcements(2015)10.1128/genomea.01304-14

Top 26%

0.775DataRank

Top 26%12 citations

Bo Yuan, Yonghui Zeng, Jianyu Meng, Alexandra P. Lewis, Ruigang Wang +4 more

Evaluation of Urban circular economy development: An empirical research of 40 cities in China

Journal of Cleaner Production(2018)10.1016/j.jclepro.2018.01.089

N/A

0.754DataRank · unranked

151 citations

Jason Chi Kin Lee, Jian Zhang, Haitao Chen, Alexandra P. Lewis, Ning Wang

Complex genetic variation in nearly complete human genomes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.24.614721

Top 27%

0.741DataRank

Top 27%27 citations

Peter Ebert, Peter A. Audano, Mark Loftus, David Porubsky, Feyza Yilmaz +62 more

Synthesis, Structural Characterization, and Reactivity of a Fluorene-Based Calcium Oxycyclopentadienide Complex

Organometallics(2015)10.1021/acs.organomet.5b00059

N/A

0.741DataRank · unranked

15 citations

Alexandra P. Lewis, Zhenfeng Xi, Wen‐Xiong Zhang, Baosheng Wei

Cancer-Derived Mutations in KEAP1 Impair NRF2 Degradation but not Ubiquitination

Cancer Research(2014)10.1158/0008-5472.can-13-1655

N/A

0.725DataRank · unranked

125 citations

Erica W. Cloer, Dennis Goldfarb, Alexandra P. Lewis, Priscila F. Siesser, Feng Yan +5 more

Assembly of 43 human Y chromosomes reveals extensive complexity and variation

Nature(2023)10.1038/s41586-023-06425-6

N/A

0.721DataRank · unranked

121 citations

Peter Ebert, Mark Loftus, Feyza Yilmaz, Peter A. Audano, Glennis A. Logsdon +27 more

A Salivary Endo-β-1,4-Glucanase Acts as an Effector That Enables the Brown Planthopper to Feed on Rice

Plant Physiology(2017)10.1104/pp.16.01493

N/A

0.719DataRank · unranked

120 citations

Wenfeng Ye, Hongdan Chen, Jiamei Zeng, Alexandra P. Lewis, Haixin Yu +3 more

Automated assembly of high-quality diploid human reference genomes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.06.483034

Top 28%

0.719DataRank

Top 28%22 citations

Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Jonathan M. D. Wood +77 more

Recombination between heterologous human acrocentric chromosomes

Nature(2023)10.1038/s41586-023-05976-y

N/A

0.710DataRank · unranked

113 citations

Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren +106 more

SOAPindel: Efficient identification of indels from short paired reads

Genome Research(2012)10.1101/gr.132480.111

N/A

0.702DataRank · unranked

107 citations

Alexandra P. Lewis, Jianliang Lu, Alan Hodgkinson, Lars Bolund, Mikkel H. Schierup +3 more

Amplifying fluorescence sensing based on inverse opal photonic crystal toward trace TNT detection

J. Mater. Chem.(2011)10.1039/c0jm02554b

N/A

0.697DataRank · unranked

103 citations

Jingxia Wang, Zelin Pan, Liying Cui, Liang Xu, Rongming Wang +3 more

Fast and accurate long-read assembly with wtdbg2

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/530972

N/A

0.680DataRank · unranked

92 citations

Alexandra P. Lewis, Jue Ruan

Fast alignment and preprocessing of chromatin profiles with Chromap

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.18.448995

N/A

0.679DataRank · unranked

14 citations

Li Song, Xiaotao Wang, Haoyu Cheng, Chenfei Wang, Clifford A. Meyer +7 more

Coordinated Priming of NKG2D Pathway by IL-15 Enhanced Functional Properties of Cytotoxic CD4+CD28− T Cells Expanded in Systemic Lupus Erythematosus

Inflammation(2023)10.1007/s10753-023-01860-z

N/A

0.676DataRank · unranked

17 citations

Laiyou Wei, Shuhui Meng, Wencong Song, Yulan Chen, Alexandra P. Lewis +6 more

The Somatic Mosaicism across Human Tissues Network

Nature(2025)10.1038/s41586-025-09096-7

N/A

0.672DataRank · unranked

43 citations

Ji Won Oh, Yujin Angelina Choi, Nam Seop Lim, Boxun Zhao, Adam Voshall +365 more

Crystal Structure of the COMPASS H3K4 Methyltransferase Catalytic Module

Cell(2018)10.1016/j.cell.2018.06.038

N/A

0.668DataRank · unranked

85 citations

Alexandra P. Lewis, Ho-Tak Lau, Calvin Leonen, Abhinav Dhall, Shao-En Ong +6 more

PigGIS: Pig Genomic Informatics System

Nucleic Acids Research(2007)10.1093/nar/gkl808

Top 30%

0.665DataRank

Top 30%9 citations

P. Gartung, Y. Hu, F. Song, Qingshun Meng, K. Kristiensen +10 more

Human telomere length is chromosome end–specific and conserved across individuals

Science(2024)10.1126/science.ado0431

N/A

0.663DataRank · unranked

82 citations

Aljona Groot, Vienna Huso, Ramin Kahidi, Kar‐Tong Tan, Samantha L. Sholes +7 more

Evaluating and improving the representation of bacterial contents in long-read metagenome assemblies

Genome Biology(2024)10.1186/s13059-024-03234-6

N/A

0.660DataRank · unranked

16 citations

Alexandra P. Lewis, Xiaowen Feng

New Variants of Porcine Epidemic Diarrhea Virus, China, 2011

Emerging Infectious Diseases(2012)10.3201/eid1808.120002

N/A

0.652DataRank · unranked

76 citations

Alexandra P. Lewis, Yunbo Liu, Yongfei Pan, Feng Deng, Yanhua Song +3 more

Fast construction of FM-index for long sequence reads

Bioinformatics(2014)10.1093/bioinformatics/btu541

N/A

0.644DataRank · unranked

72 citations

Alexandra P. Lewis

Allosteric Activation of Ubiquitin-Specific Proteases by β-Propeller Proteins UAF1 and WDR20

Molecular Cell(2016)10.1016/j.molcel.2016.05.031

N/A

0.644DataRank · unranked

72 citations

Kah Suan Lim, Hyungjin Kim, Thomas R. Hinds, Ukhyun Jo, Haibin Mao +6 more

Inhibition of SIRT1 deacetylase suppresses estrogen receptor signaling

Carcinogenesis(2009)10.1093/carcin/bgp308

N/A

0.635DataRank · unranked

68 citations

Y. Gu, Q. Zhou, Yuan Yao, Alexandra P. Lewis, Nancy E. Davidson +2 more

Association of CTLA-4 gene polymorphisms with sporadic breast cancer in Chinese Han population

BMC Cancer(2007)10.1186/1471-2407-7-173

N/A

0.635DataRank · unranked

68 citations

Dalin Li, Zhenkun Fu, Alexandra P. Lewis, Wei Jiang, Dianjun Li +1 more

Real-time mapping of nanopore raw signals

Bioinformatics(2021)10.1093/bioinformatics/btab264

N/A

0.631DataRank · unranked

66 citations

Haoran Li, Chirag Jain, Haoyu Cheng, Kin Fai Au, Alexandra P. Lewis +2 more

The altered gut virome community in rhesus monkeys is correlated with the gut bacterial microbiome and associated metabolites

Virology Journal(2019)10.1186/s12985-019-1211-z

N/A

0.630DataRank · unranked

13 citations

Hongzhe Li, Jingjing Wang, Lei Guo, Haitao Fan, Huiwen Zheng +11 more

Accurate SNV detection in single cells by transposon-based whole-genome amplification of complementary strands

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2013106118

N/A

0.626DataRank · unranked

64 citations

Longzhi Tan, Chi-Han Chang, Alexandra P. Lewis, X. Sunney Xie, Xiaohui Xie +1 more

Metagenomic technology and genome mining: emerging areas for exploring novel nitrilases

Applied Microbiology and Biotechnology(2013)10.1007/s00253-013-4932-8

N/A

0.624DataRank · unranked

63 citations

Zhen-Ming Lu, Alexandra P. Lewis, Zhe-Min Zhou, Zheng-Hong Xu, Jin‐Song Gong +5 more

Structurally divergent and recurrently mutated regions of primate genomes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.07.531415

Top 32%

0.624DataRank

Top 32%14 citations

William T. Harvey, David Porubsky, Katherine M. Munson, Kendra Hoekzema, Alexandra P. Lewis +22 more

Chemosensory protein regulates the behavioural response of Frankliniella intonsa and Frankliniella occidentalis to tomato zonate spot virus–Infected pepper (Capsicum annuum)

PLOS Pathogens(2023)10.1371/journal.ppat.1011380

N/A

0.623DataRank · unranked

18 citations

Yixin Chen, Chengcong Lu, Houjun Tian, Shuo Lin, Liang Wang +6 more

New MicroRNAs in Drosophila—Birth, Death and Cycles of Adaptive Evolution

PLoS Genetics(2014)10.1371/journal.pgen.1004096

N/A

0.606DataRank · unranked

56 citations

Yang Shen, Alexandra P. Lewis, Yuxin Chen, Li Guo, Yixin Zhao +7 more

Intercontinental biogeography of subfamily Orontioideae (Symplocarpus, Lysichiton, and Orontium) of Araceae in eastern Asia and North America

Molecular Phylogenetics and Evolution(2006)10.1016/j.ympev.2006.03.012

N/A

0.601DataRank · unranked

54 citations

Hang Sun, Alexandra P. Lewis, Jun Wen, Ze‐Long Nie, Ze-Long Nie

Near-Infrared Twisted Polycyclic Arene-Fused BisBODIPYs through a Tandem Inter- and Intramolecular Scholl Reaction

Organic Letters(2025)10.1021/acs.orglett.5c00311

N/A

0.594DataRank · unranked

13 citations

Qinghua Wu, Long Wang, Zhengxin Kang, Alexandra P. Lewis, Hua Wang +5 more

Reconstruction of the human amylase locus reveals ancient duplications seeding modern-day variation

Science(2024)10.1126/science.adn0609

N/A

0.590DataRank · unranked

50 citations

Charikleia Karageorgiou, Kwondo Kim, Petar Pajic, Kendra Scheer, Christine R. Beck +18 more

Identifying and correcting repeat-calling errors in nanopore sequencing of telomeres

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.11.475254

N/A

0.583DataRank · unranked

10 citations

Michael K. Slevin, Patrick D. McGillivray, Alexandra P. Lewis, Kar‐Tong Tan

Complete sequencing of ape genomes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.31.605654

Top 34%

0.582DataRank

Top 34%26 citations

Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar +123 more

Analysis of the limited M. tuberculosis accessory genome reveals potential pitfalls of pan-genome analysis approaches

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.21.586149

N/A

0.578DataRank · unranked

18 citations

Christoph Wippel, Natalia Quinones-Olvera, Mahboobeh Behruznia, Brendan M. Jeffrey, Michael Harris +9 more

Neotelomeres and telomere-spanning chromosomal arm fusions in cancer genomes revealed by long-read sequencing

Cell Genomics(2024)10.1016/j.xgen.2024.100588

N/A

0.576DataRank · unranked

16 citations

Michael K. Slevin, Mitchell L. Leibowitz, Max Garrity-Janger, Jidong Shan, Alexandra P. Lewis +2 more

Targeting lactate dehydrogenase A ( LDHA ) exerts antileukemic effects on T‐cell acute lymphoblastic leukemia

Cancer Communications(2020)10.1002/cac2.12080

N/A

0.574DataRank · unranked

45 citations

Yafei Yin, Yifang Yi, Zhao Cheng, Wenyong Kuang, Ruijuan Li +10 more

Mapping the Human Reference Genome’s Missing Sequence by Three-Way Admixture in Latino Genomes

The American Journal of Human Genetics(2013)10.1016/j.ajhg.2013.07.002

N/A

0.574DataRank · unranked

45 citations

Robert E. Handsaker, Alexandra P. Lewis, Eimear E. Kenny, Steven A. McCarroll, Giulio Genovese

OsMKK3, a Stress-Responsive Protein Kinase, Positively Regulates Rice Resistance to Nilaparvata lugens via Phytohormone Dynamics

International Journal of Molecular Sciences(2019)10.3390/ijms20123023

N/A

0.568DataRank · unranked

43 citations

Mengting Chen, Yuebai Zhang, Qing Gao, Ali Noman, Qi Wang +7 more

Thidiazuron-induced de novo shoot organogenesis on seedlings, etiolated hypocotyls and stem segments of Huang-qin

Plant Cell, Tissue and Organ Culture(2000)10.1023/a:1006491408762

N/A

0.568DataRank · unranked

43 citations

S. J. Murch, P. K. Saxena, Alexandra P. Lewis, Susan J. Murch, Praveen K. Saxena

Seed plant phylogenetic diversity and species richness in conservation planning within a global biodiversity hotspot in eastern Asia

Conservation Biology(2015)10.1111/cobi.12586

N/A

0.561DataRank · unranked

41 citations

Nathan J.B. Kraft, Haiying Yu, Alexandra P. Lewis, Nathan J. B. Kraft, Rong Li

Haplotype-resolved germline and somatic alterations in renal medullary carcinomas

Genome Medicine(2021)10.1186/s13073-021-00929-4

N/A

0.560DataRank · unranked

12 citations

Hyunji Kim, Yuxiang Zhang, Won Jun Kim, Guillaume Kugener, Jeremiah A. Wala +15 more

Infrared Spectroscopic Discrimination between the Loop and α-Helices and Determination of the Loop Diffusion Kinetics by Temperature-Jump Time-Resolved Infrared Spectroscopy for Cytochrome c

Biophysical Journal(2007)10.1529/biophysj.107.106799

N/A

0.557DataRank · unranked

40 citations

Qing-Li Zhang, Alexandra P. Lewis, Yu-Xiang Weng, Wei-Chi Wang, Xiang-Gang Qiu +3 more

Reaction of Dilithio Reagents with PhSiH3: Formation of Siloles and 3-Silacyclopentenes

The Journal of Organic Chemistry(2015)10.1021/acs.joc.5b01595

N/A

0.556DataRank · unranked

14 citations

Alexandra P. Lewis, Jianhao Yin, Zhenfeng Xi, Wen‐Xiong Zhang, Baosheng Wei

Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA

Bioinformatics(2009)10.1093/bioinformatics/btp344

N/A

0.553DataRank · unranked

39 citations

E. Shyong Tai, Alexandra P. Lewis, Satheesh Nair, Gordon Dougan, John Wain +3 more

Depolymerized konjac glucomannan: preparation and application in health care

Journal of Zhejiang University-SCIENCE B(2018)10.1631/jzus.b1700310

N/A

0.546DataRank · unranked

37 citations

Alexandra P. Lewis, Jin‐Song Shi, Zheng-Hong Xu, Zhenghong Xu, Min Jiang

De novo reconstruction of satellite repeat units from sequence data

Genome Research(2023)10.1101/gr.278005.123

N/A

0.538DataRank · unranked

35 citations

Justin Chu, Haoyu Cheng, Alexandra P. Lewis, Yujie Zhang

Flexible perovskite solar cells based on the metal–insulator–semiconductor structure

Chemical Communications(2016)10.1039/c6cc04840d

N/A

0.529DataRank · unranked

33 citations

Alexandra P. Lewis, Yicheng Zhao, Wenke Zhou, Rui Fu, Huiyue Pan +2 more

Assembly of 43 diverse human Y chromosomes reveals extensive complexity and variation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.01.518658

Top 37%

0.528DataRank

Top 37%9 citations

Peter Ebert, Mark Loftus, Feyza Yilmaz, Peter A. Audano, Glennis A. Logsdon +27 more

Worldwide genetic variation of the IGHV and TRBV immune receptor gene families in humans

Life Science Alliance(2019)10.26508/lsa.201800221

N/A

0.524DataRank · unranked

32 citations

Jane A. Yu, Alexandra P. Lewis, Yun S. Song, Shishi Luo

Insights into the source, mechanism and biotechnological applications of hyaluronidases

Biotechnology Advances(2022)10.1016/j.biotechadv.2022.108018

N/A

0.524DataRank · unranked

32 citations

Jin-Song Gong, Zhi-Yuan Yao, Jia-Yu Jiang, Chang Su, Alexandra P. Lewis +8 more

Independent expansion, selection, and hypervariability of the TBC1D3 gene family in humans

Genome Research(2024)10.1101/gr.279299.124

N/A

0.522DataRank · unranked

17 citations

David Porubsky, DongAhn Yoo, Max L. Dougherty, Philip C. Dishuck, Katherine M. Munson +7 more

Accuracy of genomic predictions for feed efficiency traits of beef cattle using 50K and imputed HD genotypes1

Journal of Animal Science(2016)10.2527/jas.2015-0126

N/A

0.520DataRank · unranked

31 citations

E. C. Akanno, J. J. Crowley, F. Schenkel, M. De Pauw, S. S. Moore +15 more

Search for the Higgs Boson in theH→WW(*)→l+νl−ν¯Decay Channel inppCollisions ats=7 TeVwith the ATLAS Detector

Physical Review Letters(2012)10.1103/physrevlett.108.111802

N/A

0.520DataRank · unranked

31 citations

B. Abbott, J. Abdallah, A. A. Abdelalim, A. Abdesselam, J. B. Hansen +3154 more

Biosensor-aided high-throughput screening of hyper-producing cells for malonyl-CoA-derived products

Microbial Cell Factories(2017)10.1186/s12934-017-0794-6

N/A

0.510DataRank · unranked

29 citations

Wei Chen, Ruinan Jin, Jian-Ming Jin, Shuang-Yan Tang, Alexandra P. Lewis

The three-way junction DNAzyme based probe for label-free colorimetric detection of DNA

Biosensors and Bioelectronics(2013)10.1016/j.bios.2012.08.056

N/A

0.505DataRank · unranked

28 citations

Ping Tong, Alexandra P. Lewis, Fang Gu, Lan Zhang, Shurong Tang

Gene suppressing therapy for Pelizaeus-Merzbacher disease using artificial microRNA

JCI Insight(2019)10.1172/jci.insight.125052

N/A

0.494DataRank · unranked

26 citations

Hironori Okada, Sadafumi Suzuki, Kazuhisa Sakai, Hitomi Izumi, Yukiko Matsushima +6 more

Quaternion generic Fourier descriptor for color object recognition

Pattern Recognition(2015)10.1016/j.patcog.2015.06.002

N/A

0.494DataRank · unranked

26 citations

Zhiwen Liu, Yali Huang, Yonggang Shi, Alexandra P. Lewis

Prevalence and dynamic characteristics of generalized joint hypermobility in college students

Gait & Posture(2021)10.1016/j.gaitpost.2020.12.002

N/A

0.494DataRank · unranked

26 citations

Xiaolong Zeng, Yu Xie, Junya Lai, Junhan Wu, Huan Xu +8 more

A haplotype-awarede novoassembly of related individuals using pedigree sequence graph

Bioinformatics(2019)10.1093/bioinformatics/btz942

N/A

0.494DataRank · unranked

26 citations

John Aach, Alexandra P. Lewis, Isaac Sebenius, Richard Durbin, George M. Church +1 more

Evidence for opposing selective forces operating on human-specific duplicated TCAF genes in Neanderthals and humans

Nature Communications(2021)10.1038/s41467-021-25435-4

N/A

0.494DataRank · unranked

26 citations

Vy Dang, Mitchell R. Vollger, Yafei Mao, Tzu‐Hsueh Huang, Philip C. Dishuck +9 more

Highly-flexible, low-cost, all stainless steel mesh-based dye-sensitized solar cells

Nanoscale(2014)10.1039/c4nr03999h

N/A

0.489DataRank · unranked

25 citations

Qing Zhao, Hui Dong, Qianli Ma, Wei Wang, Dongsheng Xu +2 more

A new method for the detection of Mycobacterium tuberculosis based on the CRISPR/Cas system

BMC Infectious Diseases(2023)10.1186/s12879-023-08656-4

N/A

0.489DataRank · unranked

25 citations

Xiaoying He, Yubo Zhang, Lei Chen, Zhaobao Pan, Yueying Huang +2 more

Interaction between PVY HC-Pro and the NtCF1β-subunit reduces the amount of chloroplast ATP synthase in virus-infected tobacco

Scientific Reports(2015)10.1038/srep15605

N/A

0.483DataRank · unranked

24 citations

Yongsheng Jin, Dongyuan Ma, Alexandra P. Lewis, Zhenqian Zhang, Jiangli Dong +2 more

The anatomy of successful computational biology software

Nature Biotechnology(2013)10.1038/nbt.2721

N/A

0.483DataRank · unranked

24 citations

Barry Demchak, Richard Durbin, Robert Gentleman, Martin Krzywinski, Alexandra P. Lewis +6 more

Lipid Droplet-Targeted BODIPY–Hemicyanine Hybrid Fluorescent Probes for Real-Time Monitoring of pH and Viscosity

Analytical Chemistry(2025)10.1021/acs.analchem.5c00894

N/A

0.470DataRank · unranked

22 citations

Luying Guo, Qian Li, Xing Guo, Qinghua Wu, Alexandra P. Lewis +6 more

An Epigenetic Mechanism of High Gdnf Transcription in Glioma Cells Revealed by Specific Sequence Methylation

Molecular Neurobiology(2015)10.1007/s12035-015-9365-1

N/A

0.470DataRank · unranked

22 citations

Jie Liu, Yu Lei, Ye Xiong, Alexandra P. Lewis, Xiaoqian Lin +7 more

Improving the soluble expression of difficult-to-express proteins in prokaryotic expression system via protein engineering and synthetic biology strategies

Metabolic Engineering(2023)10.1016/j.ymben.2023.05.007

N/A

0.470DataRank · unranked

22 citations

Jin-Song Gong, Chang Su, Alexandra P. Lewis, Zheng-Hong Xu, Jin‐Ping Chen +4 more

Omics‐based profiling of carcinoma of the breast and matched regional lymph node metastasis

PROTEOMICS(2008)10.1002/pmic.200800303

N/A

0.464DataRank · unranked

21 citations

Pavel Gromov, Irina Gromova, José M. Moreira, Vera Timmermans‐Wielenga, Fritz Rank +10 more

Associations of LBX1 gene and adolescent idiopathic scoliosis susceptibility: a meta-analysis based on 34,626 subjects

BMC Musculoskeletal Disorders(2016)10.1186/s12891-016-1139-z

N/A

0.464DataRank · unranked

21 citations

Ji-Kang Min, Qianghua Zhang, Alexandra P. Lewis, Haidong Li, Yaqin Cao

Potentials and challenges towards application of perovskite solar cells

Science China Materials(2016)10.1007/s40843-016-5082-4

N/A

0.457DataRank · unranked

20 citations

Chenglong Shi, Yicheng Zhao, Wenke Zhou, Alexandra P. Lewis, Rui Fu +3 more

Identification of mimp-associated effector genes in Fusarium oxysporum f. sp. cubense race 1 and race 4 and virulence confirmation of a candidate effector gene

Microbiological Research(2020)10.1016/j.micres.2019.126375

N/A

0.449DataRank · unranked

19 citations

Alexandra P. Lewis, Hanqing Chen, Fan Qiao, Huicai Zeng, Han-Qing Chen +2 more

The role of Gadd45b in neurologic and neuropsychiatric disorders: An overview

Frontiers in Molecular Neuroscience(2022)10.3389/fnmol.2022.1021207

N/A

0.449DataRank · unranked

19 citations

Shu-han Shi, Alexandra P. Lewis, Cong-cong Wang, Yao Zhang, Hui Yu +6 more

Production and characterization of surfactant-stable fungal keratinase from Gibberella intermedia CA3-1 with application potential in detergent industry

Chemical Papers(2016)10.1515/chempap-2016-0086

N/A

0.434DataRank · unranked

17 citations

Jin-Song Gong, Wen-Fang Dou, Dan-Dan Zhang, Yu-Xia Zhang, Alexandra P. Lewis +11 more

A prodrug of the capsid assembly modulator improved druggability and lowing HBsAg and HBeAg for the treatment of chronic hepatitis B

European Journal of Medicinal Chemistry(2023)10.1016/j.ejmech.2023.115485

N/A

0.429DataRank · unranked

7 citations

Ying Gong, Guozhang Long, Xinran Wang, Yurong Yang, Jia Liu +8 more

High expression of HMGA2 predicts poor survival in patients with clear cell renal cell carcinoma

OncoTargets and Therapy(2016)10.2147/ott.s116953

N/A

0.406DataRank · unranked

14 citations

Tujie Si, Zhengyu Huang, Bin Miao, Liangqing Hong, Alexandra P. Lewis +3 more

Identification of a novel transcription factor under long-term drought resistance in highland barley: a DNA affinity purification sequencing-based transcriptomic analysis

Chemical and Biological Technologies in Agriculture(2023)10.1186/s40538-022-00376-2

N/A

0.406DataRank · unranked

14 citations

Alexandra P. Lewis, Chuansen Zhao, Chunbao Yang, Qijun Xu, Hongjun Yuan +3 more

Proton-Assisted Self-Assemblies of Linear Di-Pyridyl Polyaromatic Molecules at Solid/Liquid Interface

The Journal of Physical Chemistry C(2012)10.1021/jp303352h

N/A

0.406DataRank · unranked

14 citations

Xiaoguang Xu, Jian Shang, Jianlong Li, Xinquan Hu, Boon K. Teo +2 more

CoLoRd: compressing long reads

Nature Methods(2022)10.1038/s41592-022-01432-3

N/A

0.406DataRank · unranked

14 citations

Adam Gudyś, Alexandra P. Lewis, Sebastian Deorowicz, Marek Kokot

The structure, function, and evolution of a complete human chromosome 8

Research Square(2020)10.21203/rs.3.rs-72559/v1

Top 45%

0.404DataRank

Top 45%8 citations

Glennis A. Logsdon, Mitchell R. Vollger, PingHsun Hsieh, Yafei Mao, Mikhail Liskovykh +26 more

Evolutionary Transients in the Rice Transcriptome

Genomics, Proteomics & Bioinformatics(2010)10.1016/s1672-0229(10)60023-x

N/A

0.397DataRank · unranked

10 citations

Jianguo Zhang, Alexandra P. Lewis, Hongkun Zheng, Jun Li, Yong Zhang +15 more

T1K: efficient and accurate KIR and HLA genotyping with next-generation sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.26.513955

N/A

0.397DataRank · unranked

6 citations

Gali Bai, X. Shirley Liu, Bo Li, Alexandra P. Lewis, Li Song

SNP calling, haplotype phasing and allele-specific analysis with long RNA-seq reads

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.26.656191

N/A

0.397DataRank · unranked

7 citations

Human Pangenome Reference Consortium, Alexandra P. Lewis, Neng Huang

Bedtk: finding interval overlap with implicit interval tree

Bioinformatics(2020)10.1093/bioinformatics/btaa827

N/A

0.396DataRank · unranked

13 citations

Jiazhen Rong, Alexandra P. Lewis

Expression and functional characterization of chitribrisin, a thrombin-like enzyme, in the venom of the Chinese green pit viper (Trimeresurus albolabris)

Protein Expression and Purification(2009)10.1016/j.pep.2009.03.005

N/A

0.396DataRank · unranked

13 citations

Xiaodong Yu, Qiyi He, Alexandra P. Lewis, Dehua Li, Xixun Song +7 more

SDip: A novel graph-based approach to haplotype-aware assembly based structural variant calling in targeted segmental duplications sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.25.964445

N/A

0.396DataRank · unranked

13 citations

Martin Vingron, Alexandra P. Lewis, Nanibaa’ A. Garrison, David N. Heller, George M. Church

Lipopolysaccharide-induced podocyte injury is regulated by calcineurin/NFAT and TLR4/MyD88/NF-κB signaling pathways through angiopoietin-like protein 4

Genes & Diseases(2022)10.1016/j.gendis.2020.07.005

N/A

0.385DataRank · unranked

12 citations

Chunhua Weng, Yucheng Wang, Cuili Wang, Shi Feng, Xiayu Li +5 more

Forward LASSO analysis for high-order interactions in genome-wide association study

Briefings in Bioinformatics(2013)10.1093/bib/bbt037

N/A

0.385DataRank · unranked

12 citations

Y. Wu, J. Li, R. Yang, Hainv Gao, Yang Wu +4 more

Two new cembrane-type diterpenoids from the xisha soft coral Lemnalia flava

Fitoterapia(2019)10.1016/j.fitote.2019.03.018

N/A

0.385DataRank · unranked

12 citations

Alexandra P. Lewis, Min Yang, Ai-Qun Jia, Wei Tang, Hong Wang +4 more

A comparison of a standard-dose prednisone regimen and mycophenolate mofetil combined with a lower prednisone dose in chinese adults with idiopathic nephrotic syndrome who were carriers of hepatitis B surface antigen: A prospective cohort study

Clinical Therapeutics(2009)10.1016/j.clinthera.2009.04.011

N/A

0.385DataRank · unranked

12 citations

Jiong Tian, Jianyong Wu, Qiang He, Alexandra P. Lewis, Fei Han +5 more

Impact and characterization of serial structural variations across humans and great apes

Nature Communications(2024)10.1038/s41467-024-52027-9

N/A

0.385DataRank · unranked

12 citations

Tobias Rausch, Michael Jendrusch, Hufsah Ashraf, Peter A. Audano, Ola Austine +49 more

Association between TIM-3 polymorphisms and cancer risk: a meta-analysis

Annals of Translational Medicine(2019)10.21037/atm.2019.09.101

N/A

0.373DataRank · unranked

11 citations

Cheng Yuan, Xinsheng Gu, Qiuju Chen, Dong Huang, Alexandra P. Lewis +3 more

Mixed bases mediated synthesis of thioamides in water

Journal of Sulfur Chemistry(2020)10.1080/17415993.2020.1722818

N/A

0.373DataRank · unranked

11 citations

Xuanhe Ren, Ganzhong Li, Helong Liang, Yajie Zhao, Zhiwu Wang +3 more

The contribution of rare variation to prostate cancer heritability

bioRxiv (Cold Spring Harbor Laboratory)(2015)10.1101/023440

N/A

0.365DataRank · unranked

5 citations

Kristin Rand, Arti Tandon, Alexander Allen, Swapan Mallick, Alexandra P. Lewis +20 more

Correction: A Novel Neutralizing Antibody Specific to the DE Loop of VP1 Can Inhibit EV-D68 Infection in Mice

The Journal of Immunology(2019)10.4049/jimmunol.1801658

N/A

0.365DataRank · unranked

3 citations

Jingjing Wang, Bingxiang Li, Lei Guo, Alexandra P. Lewis, Jie Song +21 more

Challenges in structural variant calling in low-complexity regions

GigaScience(2025)10.1093/gigascience/giaf154

N/A

0.361DataRank · unranked

5 citations

Alexandra P. Lewis, Qian Qin

SAM/BAM format v1.5 extensions for de novo assemblies

bioRxiv (Cold Spring Harbor Laboratory)(2015)10.1101/020024

N/A

0.360DataRank · unranked

10 citations

James K. Bonfield, Bastien Chevreux, Alexandra P. Lewis, Peter J. A. Cock

Genomic Analysis Revealed the International and Domestic Transmission of Carbapenem-Resistant Klebsiella pneumoniae in Chinese Pediatric Patients

Microbiology Spectrum(2023)10.1128/spectrum.03213-22

N/A

0.360DataRank · unranked

10 citations

Alexandra P. Lewis, Xiao Liu, Nan Shen, Yuanjie Zhou, Wenting Song +4 more

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100543

Top 50%

0.352DataRank

Top 50%6 citations

Stephanie Greer, Dmitri S. Pavlichin, Bo Zhou, Alexander E. Urban, Tsachy Weissman +94 more

Identification of a novel IRF8 homozygous mutation causing neutrophilia, monocytopenia and fatal infection in a female neonate

Infection, Genetics and Evolution(2021)10.1016/j.meegid.2021.105121

N/A

0.345DataRank · unranked

9 citations

Ying Liu, Qi Zhou, Alexandra P. Lewis, Vishal S. Chandan, Hui Wu +1 more

Genome assembly in the telomere-to-telomere era

PubMed(2023)10.48550/arxiv.2308.07877

N/A

0.345DataRank · unranked

9 citations

Richard Durbin, Alexandra P. Lewis

Comparative population pangenomes reveal unexpected complexity and fitness effects of structural variants

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.11.637762

N/A

0.345DataRank · unranked

9 citations

Bohao Fang, George E. Kolyfetis, Rebecca G. Cheek, Nancy Chen, John W. Fitzpatrick +10 more

New strategies to improve minimap2 alignment accuracy

arXiv (Cornell University)(2021)10.48550/arxiv.2108.03515

N/A

0.345DataRank · unranked

9 citations

Alexandra P. Lewis

Characteristics of population structure, antimicrobial resistance, virulence factors, and morphology of methicillin-resistant Macrococcus caseolyticus in global clades

BMC Microbiology(2022)10.1186/s12866-022-02679-8

N/A

0.345DataRank · unranked

9 citations

Shengyi Min, Yuxuan Sun, Jiaquan Ye, Zhemin Zhou, Alexandra P. Lewis +1 more

Neotelomeres and Telomere-Spanning Chromosomal Arm Fusions in Cancer Genomes Revealed by Long-Read Sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.30.569101

N/A

0.343DataRank · unranked

4 citations

Michael K. Slevin, Mitchell L. Leibowitz, Max Garrity-Janger, Alexandra P. Lewis, Patrick D. McGillivray +1 more

Larkinella soli sp. nov., isolated from biological soil crusts

International Journal of Systematic and Evolutionary Microbiology(2017)10.1099/ijsem.0.002431

N/A

0.330DataRank · unranked

8 citations

Yu Tao, Alexandra P. Lewis, Jianyu Meng, Ziyi Zhang, Fuying Feng +4 more

Increased mutation rate and interlocus gene conversion within human segmental duplications

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.06.498021

N/A

0.330DataRank · unranked

8 citations

William S. DeWitt, Philip C. Dishuck, William T. Harvey, Xavi Guitart, Michael E. Goldberg +13 more

Linezolid combined with trimethoprim–sulfamethoxazole therapy for the treatment of disseminated nocardiosis

Journal of Medical Microbiology(2011)10.1099/jmm.0.018549-0

N/A

0.330DataRank · unranked

8 citations

Hua Zhou, Alexandra P. Lewis, Jianying Zhou, Qian Shen

De novo assembly of 64 haplotype-resolved human genomes of diverse ancestry and integrated analysis of structural variation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.16.423102

Top 53%

0.322DataRank

Top 53%5 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +58 more

Apoptosis and pyroptosis in the nasal mucosa of Syrian hamster during SARS-CoV-2 infection and reinfection

Apoptosis(2024)10.1007/s10495-024-01940-x

N/A

0.321DataRank · unranked

5 citations

Xin Zhao, Xinglong Zhang, Huiwen Zheng, Yibin Wang, Jinghan Hou +11 more

Multispecies pangenomes reveal a pervasive influence of population size on structural variation

Science(2025)10.1126/science.adw1931

N/A

0.312DataRank · unranked

7 citations

Bohao Fang, Danielle E. Khost, George E. Kolyfetis, Rebecca G. Cheek, Devon A. DeRaad +10 more

Correcting Illumina sequencing errors for human data

arXiv (Cornell University)(2015)10.48550/arxiv.1502.03744

N/A

0.312DataRank · unranked

7 citations

Alexandra P. Lewis

A Cytological Study on three Species of Colocasia (Araceae) from Yunnan

Caryologia(2003)10.1080/00087114.2003.10589341

N/A

0.312DataRank · unranked

7 citations

Tingshuang Yi, Alexandra P. Lewis, Xun Gong, Ting‐Shuang Yi, Zhiyun Yang

Structural polymorphism and diversity of human segmental duplications

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.04.597452

N/A

0.312DataRank · unranked

7 citations

Philip C. Dishuck, DongAhn Yoo, William T. Harvey, Katherine M. Munson, Alexandra P. Lewis +8 more

Infestation by the Piercing–Sucking Herbivore Nilaparvata lugens Systemically Triggers JA- and SA-Dependent Defense Responses in Rice

Biology(2023)10.3390/biology12060820

N/A

0.312DataRank · unranked

7 citations

Liping Xu, Weiping Wu, Weizheng Peng, Yonggen Lou, Jing Lu +2 more

Sample graphs and sequences for testing sequence-to-graph alignment

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6617246

Top 55%

0.301DataRank

Top 55%3 citations

Alexandra P. Lewis

Full resolution HLA and KIR genes annotation for human genome assemblies

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.20.576452

Top 56%

0.293DataRank

Top 56%4 citations

Li Song, Alexandra P. Lewis, Ying Zhou

Structure and function of rhizosphere soil microbial communities associated with root rot of Knoxia roxburghii

Frontiers in Microbiology(2024)10.3389/fmicb.2024.1424633

N/A

0.292DataRank · unranked

6 citations

Alexandra P. Lewis, Jiahong Dong, Xiahong He, Lei Zhang, Bin Qiu +1 more

Fast sequence to graph alignment using the graph wavefront algorithm

arXiv (Cornell University)(2022)10.48550/arxiv.2206.13574

N/A

0.292DataRank · unranked

6 citations

Shiqi Wu, Srinivas Aluru, Alexandra P. Lewis, Haowen Zhang

Program structure aware fault localization

Proceedings of the International Workshop on Innovative Software Development Methodologies and Practices(2014)10.1145/2666581.2666593

N/A

0.292DataRank · unranked

6 citations

Yuzhen Liu, Zhenyu Zhang, Jian Liu, Alexandra P. Lewis

Profiling the Cross Reactivity of Ubiquitin with the Nedd8 Activating Enzyme by Phage Display

PLoS ONE(2013)10.1371/journal.pone.0070312

N/A

0.291DataRank · unranked

5 citations

Keya Zhang, Karan Bhuripanyo, Chan Hee J. Choi, Eric B. Villhauer, Alexandra P. Lewis +5 more

A General Strategy to Develop Intramolecular Spirocyclic Boron Dipyrromethene Fluorophores for Self‐Blinking Super‐Resolution Imaging

Angewandte Chemie International Edition(2025)10.1002/anie.202518973

N/A

0.286DataRank · unranked

5 citations

Yiran Liu, Long Wang, Ruotong Li, Xing Guo, Luying Guo +7 more

Correction: Cisplatin-induced epigenetic activation of miR-34a sensitizes bladder cancer cells to chemotherapy

Molecular Cancer(2022)10.1186/s12943-022-01614-9

N/A

0.284DataRank · unranked

4 citations

Gan Yu, Runlin Shi, Bin Lang, Xianguo Chen, Ding Xia +9 more

A novel phthalazinone derivative as a capsid assembly modulator inhibits hepatitis B virus expression

Antiviral Research(2024)10.1016/j.antiviral.2023.105763

N/A

0.269DataRank · unranked

5 citations

Ying Gong, Feifei Liu, Wuhong Chen, Xinran Wang, Guozhang Long +7 more

Diversity and phylogenetic analysis of planktonic bacteria in eutrophic zone of Lake Wuliangsuhai

Biodiversity Science(2009)10.3724/sp.j.1003.2009.09101

N/A

0.269DataRank · unranked

5 citations

Liu Hui-rong, Feng Fu-ying, Meng Jian-yu, lina Ma, Meng JianYu +2 more

A synopsis and a new species of the E Asian genus Pinellia (Araceae)

Willdenowia(2007)10.3372/wi.37.37209

N/A

0.269DataRank · unranked

5 citations

Alexandra P. Lewis, Rong Li, Guanghua Zhu

Transcriptome Analysis and Microsatellite Markers Development of a Traditional Chinese Medicinal Herb Halenia elliptica D. Don (Gentianaceae)

Evolutionary Bioinformatics(2018)10.1177/1176934318790263

N/A

0.269DataRank · unranked

5 citations

Nanyu Han, Alexandra P. Lewis, Lihua Meng, Li‐Hua Meng, Mingliu Yang

Z-DNA-induced super-transport of energy within genomes

Physica A: Statistical Mechanics and its Applications(2007)10.1016/j.physa.2007.06.023

N/A

0.269DataRank · unranked

5 citations

Peter Dröge, Vladimír Kulish, Alexandra P. Lewis, Vladimir V. Kulish

Typhonium jinpingense, a New Species from Yunnan, China, with the Lowest Diploid Chromosome Number in Araceae

Novon(2002)10.2307/3392969

N/A

0.269DataRank · unranked

5 citations

Bian Fuhua, Zhonglang Wang, Alexandra P. Lewis, Bian Fu-hua, Wang Zhonglang

Serum IgE Levels Are Associated With the Prognosis of Minimal Change Disease

Frontiers in Immunology(2022)10.3389/fimmu.2022.840857

N/A

0.269DataRank · unranked

5 citations

Lefeng Wang, Xiayu Li, Wenqing Chen, Ying Zhang, Jianghua Chen +1 more

Minigraph pangenome graphs for HPRC year-1 samples

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6499594

Top 60%

0.251DataRank

Top 60%1 citations

Alexandra P. Lewis

Mechanism study of 5-alkylresorcinols-induced colon cancer cell apoptosis in vitro

World Chinese Journal of Digestology(2017)10.11569/wcjd.v25.i29.2621

N/A

0.243DataRank · unranked

2 citations

Alexandra P. Lewis, Hai Li, Yu-Feng Wang, Ling Meng, Yin-Xue Yang +3 more

Human telomere length is chromosome specific and conserved across individuals

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.21.572870

N/A

0.241DataRank · unranked

4 citations

Aljona Groot, Vienna Huso, Ramin Kahidi, Kar-Tong Tan, Rebecca Keener +8 more

A New Species of Cymbidium (Orchidaceae) from Tibet (Xizang), China

Novon(2003)10.2307/3393520

N/A

0.241DataRank · unranked

4 citations

Zhiling Dao, Alexandra P. Lewis, Chunlin Long

Long-read sequencing of trios reveals increased germline and postzygotic mutation rates in repetitive DNA

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.18.665621

N/A

0.241DataRank · unranked

4 citations

Yang Sui, Young-Jun Kwon, Nidhi Koundinya, Isaac Wong, Katherine M. Munson +7 more

The date of interbreeding between Neandertals and modern humans

arXiv (Cornell University)(2012)10.48550/arxiv.1208.2238

N/A

0.241DataRank · unranked

4 citations

Nick Patterson, Alexandra P. Lewis, Svante Pääbo, David Reich, Sriram Sankararaman

LISA: A Case For Learned Index based Acceleration of Biological Sequence Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.22.423964

N/A

0.241DataRank · unranked

4 citations

Saurabh Kalikar, Sanchit Misra, Jialin Ding, Vasimuddin Md, Nesime Tatbul +3 more

A cross-species alignment tool (CAT)

BMC Bioinformatics(2007)10.1186/1471-2105-8-349

N/A

0.241DataRank · unranked

4 citations

Liang Guan, Tao Liu, Yiran Guo, International Chicken Polymorphism Map Consortium, Jun Wang +3 more

A Low Data Complexity Attack on the GMR-2 Cipher Used in the Satellite Phones

Lecture Notes in Computer Science(2014)10.1007/978-3-662-43933-3_25

N/A

0.241DataRank · unranked

4 citations

Alexandra P. Lewis, Chao Li, Bing Sun, Ruilin Li

HSPA12A was identified as a key driver in colorectal cancer GWAS loci 10q26.12 and modulated by an enhancer–promoter interaction

Archives of Toxicology(2023)10.1007/s00204-023-03494-4

N/A

0.230DataRank · unranked

3 citations

Linyun Fan, Fuwei Zhang, Chaoqun Huang, Yimin Cai, Can Chen +24 more

CIS checkpoint deletion enhances the fitness of cord blood derived natural killer cells transduced with a chimeric antigen receptor

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.29.014472

N/A

0.224DataRank · unranked

2 citations

Rafet Basar, Elif Gokdemir, Natalia Baran, Nadima Uprety, Ana Karen Nunez Cortes +55 more

Irregular shaping of polystyrene nanosphere array by plasma etching

Materials Science-Poland(2013)10.2478/s13536-013-0109-5

N/A

0.219DataRank · unranked

2 citations

Tingting Liu, Jun Ma, Wei Wang, Alexandra P. Lewis, Pengwei Wang +3 more

The floristic structure of the xizang part of the Qinghai-Xizang plateau plant subkingdom

Chinese Geographical Science(1991)10.1007/bf02664517

N/A

0.208DataRank · unranked

3 citations

Sugong Wu, Alexandra P. Lewis

TA-2, a thrombin-like enzyme from the Chinese white-lipped green pitviper (Trimeresurus albolabris)

Blood Coagulation & Fibrinolysis(2012)10.1097/mbc.0b013e32835496b2

N/A

0.208DataRank · unranked

3 citations

Alexandra P. Lewis, Bin Zhou, Haoping Wen, Jingbo Li, Bin Xiao +4 more

Plasma D-dimer as a potential predictor of progression in IgA nephropathy: a cohort study

Renal Failure(2023)10.1080/0886022x.2023.2251587

N/A

0.208DataRank · unranked

3 citations

Yan Jiang, Zishu Xu, Jun Cheng, Alexandra P. Lewis, Xiayu Li +3 more

SARS-CoV-2 subgenomic RNA: formation process and rapid molecular diagnostic methods

Clinical Chemistry and Laboratory Medicine (CCLM)(2023)10.1515/cclm-2023-0846

N/A

0.208DataRank · unranked

3 citations

Huizi Zhou, Fangyuan Shen, Guimao Yang, Yubo Zhang, Xiaoyu Zhang +2 more

Texture-Based Segmentation of SEM Images of Shale Rocks and Estimation of Meso-Scale Elastic Modulus by 2D FEM

Rock Mechanics and Rock Engineering(2025)10.1007/s00603-025-04442-7

N/A

0.208DataRank · unranked

3 citations

Yansong Liu, Longsheng Li, Zihang Wang, Alexandra P. Lewis, Yan‐Song Liu +1 more

Reappraisal of Fosbergia shweliensis (Rubiaceae), a species endemic to the Gaoligong Mountains,Western Yunnan, China

Acta Phytotaxonomica Sinica(2006)10.1360/aps050067

N/A

0.208DataRank · unranked

3 citations

Alexandra P. Lewis

Research on Semantic Networks Based Online Learning Knowledge Management

International Journal of Digital Content Technology and its Applications(2012)10.4156/jdcta.vol6.issue8.15

N/A

0.208DataRank · unranked

3 citations

Guoyin Zhang, Alexandra P. Lewis, Zhang GuoYin -

Evaluation of haplotype-aware long-read error correction with hifieval

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.05.543788

N/A

0.208DataRank · unranked

3 citations

Xiaowen Feng, Alexandra P. Lewis, Yujie Guo

Using the linear references from the pangenome to discover missing autism variants

Nature Communications(2026)10.1038/s41467-026-68378-4

Top 65%

0.208DataRank

Top 65%3 citations

Jiadong Lin, Michelle D. Noyes, Young-Jun Kwon, Isaac Wong, Nidhi Koundinya +252 more

Undifferentiated sinonasal malignant melanoma: A case report

Oncology Letters(2018)10.3892/ol.2018.8662

N/A

0.208DataRank · unranked

3 citations

Liang‑Liang Huang, Ao Xu, An‑Li Zhang, Xue Kong, Min Ding +16 more

Human assemblies evaluated in the hifiasm paper

Zenodo (CERN European Organization for Nuclear Research)(2020)10.5281/zenodo.4393631

Top 66%

0.185DataRank

Top 66%1 citations

Gregory T. Concepcion, Xiaowen Feng, Haowen Zhang, Alexandra P. Lewis, Haoyu Cheng

Improving long-read somatic structural variant calling with pangenome and de novo personal genome assembly

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.28.685154

N/A

0.172DataRank · unranked

2 citations

Jakob Heinz, Alexandra P. Lewis, Qian Qin

Paris xuefengshanensis (Melanthiaceae) sp. nov. from central China with a distinctive phylogenetic placement in Paris

Plant Systematics and Evolution(2024)10.1007/s00606-024-01916-z

N/A

0.165DataRank · unranked

2 citations

JUN YANG, Qi Tang, Shuai Peng, Jing Tian, Alexandra P. Lewis +2 more

The application of proteomics and phosphoproteomics to reveal the molecular mechanism of salidroside in ameliorating myocardial hypoxia

Heliyon(2024)10.1016/j.heliyon.2024.e30433

N/A

0.165DataRank · unranked

2 citations

Kaiyuan Fan, Alexandra P. Lewis, Lulu Wang, Wenqing Zhu, Shuang Zou +8 more

First report of root rot caused by Fusarium oxysporum on Knoxia valerianoides in China

Journal of Plant Pathology(2023)10.1007/s42161-023-01409-x

N/A

0.165DataRank · unranked

2 citations

Bin Qiu, Lei Zhang, Alexandra P. Lewis, Jiahong Dong, Xiahong He +1 more

Exploration on the Reform of Practice Teaching System of Applied Undergraduate “Data Structure and Algorithm” Based on Outcome-Based Education

Advances in Social Science, Education and Humanities Research(2021)10.2991/assehr.k.210527.056

N/A

0.165DataRank · unranked

2 citations

Juan Peng, Ya-hong Leng, Hong-shi Zhang, Yahong Leng, Alexandra P. Lewis

A new Amorphophallus species (Araceae) from Vietnam

Bangladesh Journal of Plant Taxonomy(2012)10.3329/bjpt.v19i2.13136

N/A

0.165DataRank · unranked

2 citations

Alexandra P. Lewis, Xun Gong

Prolonged Exposure to Plant Volatiles does not Significantly Affect Pban Expression and Mating Behavior in Diamondback Moth [Plutella Xylostella (Lepidoptera: Plutellidae)]

Journal of Chemical Ecology(2023)10.1007/s10886-023-01462-x

N/A

0.165DataRank · unranked

2 citations

Ruibin Xu, Alexandra P. Lewis, Shuo Lin, Yixin Chen, Yong Chen +3 more

Insight into the natural regulatory mechanisms and clinical applications of the CRISPR-Cas system

Heliyon(2024)10.1016/j.heliyon.2024.e39538

N/A

0.165DataRank · unranked

2 citations

Haoyue Deng, Dongdao Ma, Mengyuan Gao, Zhihan Zhou, Alexandra P. Lewis +3 more

Companion data deposit of manuscript: Evaluating and improving the representation of bacterial contents in long-read metagenome assemblies

arXiv (Cornell University)(2022)10.48550/arxiv.2210.00098

N/A

0.165DataRank · unranked

2 citations

Alexandra P. Lewis, Xiaowen Feng

Long-range somatic structural variation calling from matched tumor-normal co-assembly graphs

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.29.605160

N/A

0.165DataRank · unranked

2 citations

Qian Qin, Alexandra P. Lewis, Megan K. Le

Likelihood-based quadratic analyses for diallel cross and other experiments involving data collected on ordered pairs of sampling units

Statistics & Probability Letters(2002)10.1016/s0167-7152(02)00116-5

N/A

0.165DataRank · unranked

2 citations

Alexandra P. Lewis

New cembrane-type diterpenoids with anti-inflammatory activity from the South China Sea soft coral Sinularia sp.

Beilstein Journal of Organic Chemistry(2022)10.3762/bjoc.18.180

N/A

0.165DataRank · unranked

2 citations

Alexandra P. Lewis, Quan Xu, Wei Tang, Zai-Yong Zhang, Ming-Zhi Su +8 more

Regulation of soil physical environment and erosion characteristics of farmland by amendments in the black soil region of Northeast China

Soil and Tillage Research(2026)10.1016/j.still.2025.106810

N/A

0.165DataRank · unranked

2 citations

Alexandra P. Lewis, Qiang Fu, Tianxiao Li, Renjie Hou, Mo Li +6 more

CoLoRd: Compressing long reads

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.17.452767

N/A

0.165DataRank · unranked

2 citations

Adam Gudyś, Alexandra P. Lewis, Sebastian Deorowicz, Marek Kokot

Comprehensive bioinformatics analysis for MEF2 family genes in gastric cancer

Translational Cancer Research(2022)10.21037/tcr-22-373

N/A

0.165DataRank · unranked

2 citations

Ming Luo, Peilong Wang, Hongling Peng, Zhao Cheng, Alexandra P. Lewis +1 more

Computational Analysis of Cell Dynamics in Videos with Hierarchical-Pooled Deep-Convolutional Features

Journal of Computational Biology(2018)10.1089/cmb.2018.0023

N/A

0.165DataRank · unranked

2 citations

Alexandra P. Lewis, Yonggang Shi, Zhiwen Liu, Fengqian Pang

Elaeocarpus gaoligongshanensisandE. dianxiensis(Elaeocarpaceae), Two New Species from Yunnan, China

Annales Botanici Fennici(2011)10.5735/085.048.0212

N/A

0.165DataRank · unranked

2 citations

Alexandra P. Lewis, Tang Ya, Zhiling Dao, Ya Tang

Rediscovery and supplemental description of Paris birmanica (Melanthiaceae), a species endemic to Myanmar

Phytotaxa(2019)10.11646/phytotaxa.391.3.8

N/A

0.165DataRank · unranked

2 citations

XUE-FEI YANG, THAUNG-NAING OO, YUE-HU WANG, Alexandra P. Lewis, Xuefei Yang +2 more

Bile acid receptors regulate the role of intestinal macrophages in inflammatory bowel disease

Frontiers in Immunology(2025)10.3389/fimmu.2025.1577000

N/A

0.165DataRank · unranked

2 citations

Xianhong Shi, Beibei Wang, Alexandra P. Lewis, Bin Li, Tianqi Zhou +5 more

A haplotype-aware de novo assembly of related individuals using pedigree graph

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/580159

N/A

0.165DataRank · unranked

2 citations

John Aach, Alexandra P. Lewis, Richard Durbin, George M. Church, Nanibaa’ A. Garrison

Innenrücktitelbild: Barium Dibenzopentalenide as a Main‐Group Metal η8 Complex: Facile Synthesis from 1,4‐Dilithio‐1,3‐butadienes and Ba[N(SiMe3)2]2, Structural Characterization, and Reaction Chemistry (Angew. Chem. 41/2013)

Angewandte Chemie(2013)10.1002/ange.201307184

N/A

0.152DataRank · unranked

1 citations

Baosheng Wei, Ling Xu, Wen‐Xiong Zhang, Zhenfeng Xi, Alexandra P. Lewis

Minigraph pangenome graphs for HPRC year-1 samples

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6983934

Top 71%

0.136DataRank

Top 71%1 citations

Alexandra P. Lewis

AGC archives of human and SARS-CoV-2 genomes

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.5826274

Top 71%

0.126DataRank

Top 71%1 citations

Agnieszka Danek, Alexandra P. Lewis, Sebastian Deorowicz

Search for decays of the Higgs boson into scalar particles decaying into four or six b quarks using pp collisions at s=13 TeV with the ATLAS detector

Physical Review D(2025)10.1103/mzld-ldlt

N/A

0.119DataRank · unranked

1 citations

Erlend Aakvaag, B. Abbott, Sara Abdelhameed, K. Abeling, Nils Julius Abicht +2912 more

Search for a new pseudoscalar decaying into a pair of bottom and antibottom quarks in top-associated production in $$\sqrt{s}=13$$ TeV proton–proton collisions with the ATLAS detector

The European Physical Journal C(2025)10.1140/epjc/s10052-025-14507-0

N/A

0.119DataRank · unranked

1 citations

G. Aad, Erlend Aakvaag, B. Abbott, Sara Abdelhameed, K. Abeling +2908 more

CRISPAltRations: a validated cloud-based approach for interrogation of double-strand break repair mediated by CRISPR genome editing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.13.382283

N/A

0.118DataRank · unranked

1 citations

Rolf Turk, Alexandra P. Lewis, Nathan Roberts, Garrett R. Rettig, Ashley M. Jacobi +8 more

The Application of Proteomics and Phosphoproteomics to Reveal the Molecular Mechanism of Salidroside in Ameliorating Myocardial Hypoxia

SSRN Electronic Journal(2023)10.2139/ssrn.4495466

N/A

0.115DataRank · unranked

1 citations

Kaiyuan Fan, Alexandra P. Lewis, Wenqing Zhu, Lulu Wang, Shuang Zou +8 more

Diploid donor-specific assembly enhances somatic structural variant detection in cancer genomes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.28.685155

N/A

0.111DataRank · unranked

1 citations

Han Qu, Qian Qin, Alexandra P. Lewis, Peter J. Park, Yuwei Zhang

Structural and transduction patterns of human-specific polymorphic SVA insertions

Mobile DNA(2025)10.1186/s13100-025-00373-w

N/A

0.104DataRank · unranked

1 citations

Mark Loftus, Emily C. Golba, Haley Abel, Hufsah Ashraf, Peter A. Audano +64 more

A new species of Calanthe (Orchidaceae) from Yunnan, China

Nordic Journal of Botany(2007)10.1111/j.0107-055x.2007.00022_22.x

N/A

0.104DataRank · unranked

1 citations

Xiaohua Jin, Alexandra P. Lewis, Jin Xiaohua

A New Formula for the Energy Functionals Ek and its Applications

International Mathematics Research Notices(2010)10.1093/imrn/rnm033

N/A

0.104DataRank · unranked

1 citations

Alexandra P. Lewis

ntsm: an alignment-free, ultra low coverage, sequencing technology agnostic, intraspecies sample comparison tool for sample swap detection

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.01.565041

N/A

0.104DataRank · unranked

1 citations

Jiazhen Rong, Xiaowen Feng, Alexandra P. Lewis, Justin Chu

A new Arisaema species from Guangxi and first report of A. austroyunnanense from Hainan, China

Journal of Systematics and Evolution(2012)10.1111/j.1759-6831.2012.00229_5.x

N/A

0.104DataRank · unranked

1 citations

Alexandra P. Lewis, Melina Claussnitzer, Ying TAN, Chunlin Long, Guang‐Wan HU

Mule or hinny might be a natural model for studying the role of parent genomes in carcinogenesis

Medical Hypotheses(2008)10.1016/j.mehy.2008.07.001

N/A

0.104DataRank · unranked

1 citations

Jianrong Lu, Alexandra P. Lewis, Jing Ye, Fucheng Ma, Yangmei Wang +3 more

Micro-scale hierarchical photoanode for quantum-dot-sensitized solar cells based on TiO2 nanowires

Frontiers of Optoelectronics(2016)10.1007/s12200-016-0565-8

N/A

0.104DataRank · unranked

1 citations

Dapeng Yu, Qing Zhao, Jing Wei, Alexandra P. Lewis

Constraining off-shell Higgs boson production and the Higgs boson total width using WW → ℓνℓν final states with the ATLAS detector

Physics Letters B(2025)10.1016/j.physletb.2025.139898

N/A

0.104DataRank · unranked

1 citations

Erlend Aakvaag, B. Abbott, Sara Abdelhameed, K. Abeling, Nils Julius Abicht +2842 more

AGC: Compact representation of assembled genomes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.07.487441

N/A

0.104DataRank · unranked

1 citations

Agnieszka Danek, Alexandra P. Lewis, Sebastian Deorowicz

FTO rs1121980 polymorphism contributes to coronary artery disease susceptibility in a Chinese Han population

Lipids in Health and Disease(2025)10.1186/s12944-024-02417-1

N/A

0.104DataRank · unranked

1 citations

Yu-Lan Zhou, Yun-Fei Qu, Zhao-Fu Liao, Alexandra P. Lewis, Jie Cheng +12 more

Urinary Sodium Excretion and Kidney Disease Progression in IgA Nephropathy: A Cohort Study

American Journal of Nephrology(2024)10.1159/000540270

N/A

0.104DataRank · unranked

1 citations

Xuliang Wang, Yijie Cheng, Suhan Zhou, Yan Yang, Jun Cheng +7 more

The “Real Images” of Engineering Ethics Education: An Analysis Based on Systematic Literature Review(SLR)

2021 IEEE Global Engineering Education Conference (EDUCON)(2021)10.1109/educon46332.2021.9454004

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0.104DataRank · unranked

1 citations

Alexandra P. Lewis, Jinlu Shen

devider: long-read reconstruction of many diverse haplotypes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.05.621838

N/A

0.104DataRank · unranked

1 citations

Christina Boucher, Yun William Yu, Noelle Noyes, Alexandra P. Lewis, Jim Shaw

The manipulation of cell suspensions from zebrafish intestinal mucosa contributes to understanding enteritis

Frontiers in Immunology(2023)10.3389/fimmu.2023.1193977

N/A

0.104DataRank · unranked

1 citations

Yuhang Liu, Jiayuan Xie, Lei Zhang, Qingsong Zhu, Lian Su +9 more

Bedtk: Finding Interval Overlap with Implicit Interval Tree

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.07.190744

N/A

0.104DataRank · unranked

1 citations

Jiazhen Rong, Alexandra P. Lewis

De novo reconstruction of satellite repeat units from sequence data

arXiv (Cornell University)(2023)10.48550/arxiv.2304.09729

N/A

0.104DataRank · unranked

1 citations

Justin Jang Hann Chu, Haoyu Cheng, Alexandra P. Lewis, Yujie Zhang

Protein Structure Prediction and Bioinfamatic Analysis of Novel Fusion Gene IKZF1/Pfas in BPDCN

Blood(2021)10.1182/blood-2021-148251

N/A

0.104DataRank · unranked

1 citations

Qian Yu, Hongkai Zhu, Yi Jiang, Zhihua Wang, Ruijuan Li +7 more

Compositional and phylogenetic beta diversity reveal different patterns of aquatic plant assemblages in lakes along the Changjiang River

Aquatic Botany(2023)10.1016/j.aquabot.2023.103630

N/A

0.104DataRank · unranked

1 citations

Wang Dandan, Dandan Wang, Alexandra P. Lewis, Li Xinhui

Two New Species ofMahonia(Berberidaceae) from Yunnan, China

Annales Botanici Fennici(2009)10.5735/085.046.0518

N/A

0.104DataRank · unranked

1 citations

Alexandra P. Lewis, Jun-Sheng Ying, Zhe Chen

Crystallization and preliminary crystallographic analysis of the second RRM of Pub1 fromSaccharomyces cerevisiae

Acta Crystallographica Section F Structural Biology and Crystallization Communications(2009)10.1107/s1744309108040682

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0.104DataRank · unranked

1 citations

Alexandra P. Lewis, Xu Li, Yang Li, Huihao Zhou, Liwen Niu +2 more

IL-15 enhances functional properties and responses of cytotoxic CD4 + CD28 − T cells expanded in Systemic lupus erythematosus

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.04.522682

N/A

0.104DataRank · unranked

1 citations

Laiyou Wei, Shuihui Meng, Wencong Song, Yulan Chen, Alexandra P. Lewis +6 more

The Expression Pattern of the Splice Variants of Coxsackievirus and Adenovirus Receptor Impacts CV-B3-Induced Encephalitis and Myocarditis in Neonatal Mice

International Journal of Molecular Sciences(2025)10.3390/ijms26157163

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0.104DataRank · unranked

1 citations

Xin Zhang, Yifan Zhang, Alexandra P. Lewis, Huiwen Zheng, Jingjing Wang +9 more

Research progress on endovascular treatment of Stanford Type A aortic dissection

Frontiers in Cardiovascular Medicine(2025)10.3389/fcvm.2025.1641559

N/A

0.104DataRank · unranked

1 citations

Yang Zhang, Alexandra P. Lewis, Yuanyuan Guo, Yue Xiao

LogLSHD: Fast Log Parsing with Locality-Sensitive Hashing and Dynamic Time Warping

arXiv (Cornell University)(2025)10.48550/arxiv.2504.02172

N/A

0.104DataRank · unranked

1 citations

Xia Wu, Alexandra P. Lewis, Shu-Wei Huang

Optimization of Resistance Performance for Inland Twin-Skeg Ship Based on CFD and Surrogate Modeling

Volume 8: CFD and FSI(2021)10.1115/omae2021-63075

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0.104DataRank · unranked

1 citations

Baiwei Feng, Qiang Zheng, Alexandra P. Lewis, Helei Yan

Treatment of Fourth Metatarsal Brachymetatarsia Using Distraction Osteogenesis with External Fixator: Surgical Techniques, Outcomes and Complications

Orthopaedic Surgery(2024)10.1111/os.14204

N/A

0.104DataRank · unranked

1 citations

Jianming Gu, Yong Wu, Yan Wang, Xiaofeng Gong, Ning Sun +8 more

Parallel computing in biomedical research and the search for peta-scale biomedical applications

Advances in Parallel Computing(2004)10.1016/s0927-5452(04)80088-1

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0.104DataRank · unranked

1 citations

D. Hart, R.W. Sheppard, R. Cruise, V. Moskvin, L. Papiez +6 more

A new method for the detection of Mycobacterium tuberculosis based on the CRISPR/Cas system

Research Square(2023)10.21203/rs.3.rs-2588529/v1

N/A

0.104DataRank · unranked

1 citations

Xiaoying He, Yubo Zhang, Lei Chen, Zhaobao Pan, Yueying Huang +2 more

Association between RFC1 A80G polymorphism and the susceptibility to nonsyndromic cleft lip with or without cleft palate: a meta-analysis

Annals of Translational Medicine(2019)10.21037/atm.2019.12.30

N/A

0.104DataRank · unranked

1 citations

Cheng Yuan, Jiarong Chen, Xinsheng Gu, Mengyu Du, Jin Zha +4 more

Non-human assemblies evaluated in the hifiasm paper

Zenodo (CERN European Organization for Nuclear Research)(2020)10.5281/zenodo.4393749

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0DataRank

Top 100%0 citations

Gregory T. Concepcion, Xiaowen Feng, Haowen Zhang, Alexandra P. Lewis, Haoyu Cheng

PGP1 hifiasm assembly

Zenodo (CERN European Organization for Nuclear Research)(2021)10.5281/zenodo.5150756

N/A

0DataRank · unranked

0 citations

Alexandra P. Lewis, Haoyu Cheng

Minigraph pangenome graphs for HPRC year-1 samples

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6286522

Top 100%

0DataRank

Top 100%0 citations

Alexandra P. Lewis

A nomogram to predict the risk of relapse in patients with minimal change disease: a retrospective cohort study

Renal Failure(2024)10.1080/0886022x.2024.2423007

N/A

0DataRank · unranked

0 citations

Qinfan Yao, Ying Zhang, Xuan Zhang, Mengjie Hu, Jianpeng Chen +4 more

Data from Aberrant RNA Splicing Is a Primary Link between Genetic Variation and Pancreatic Cancer Risk

(2023)10.1158/0008-5472.c.6513904

N/A

0DataRank · unranked

0 citations

Can Chen, Meilin Rao, Ming Zhang, Zequn Lu, Yimin Cai +23 more

Yak k-mer dumps for partition human chrX/Y in de novo assemblies

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.7882299

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0DataRank

Top 100%0 citations

Alexandra P. Lewis

Human reference genome analysis sets

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.8045373

Top 100%

0DataRank

Top 100%0 citations

Alexandra P. Lewis

AGC archives of human and SARS-CoV-2 genomes

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.7694116

Top 100%

0DataRank

Top 100%0 citations

Agnieszka Danek, Alexandra P. Lewis, Sebastian Deorowicz

HLA and KIR allele genotyping for HPRC and CPC-p1 haplotype assemblies

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.8372992

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0DataRank

Top 100%0 citations

Alexandra P. Lewis, Ying Zhou

Lloydia nana, a new species of Liliaceae from China

Bangladesh Journal of Plant Taxonomy(2012)10.3329/bjpt.v19i1.10939

N/A

0DataRank · unranked

0 citations

Alexandra P. Lewis, Rong Li

A General Strategy to Develop Intramolecular Spirocyclic Boron Dipyrromethene Fluorophores for Self‐Blinking Super‐Resolution Imaging

Angewandte Chemie(2025)10.1002/ange.202518973

N/A

0DataRank · unranked

0 citations

Yiran Liu, Long Wang, Ruotong Li, Xing Guo, Luying Guo +7 more

The UPF3B Splice Variant Modulated by HnRNPR Promotes Invasion and Metastasis of Hepatocellular Carcinoma via Inhibiting the CDH1/Hippo Pathway

SSRN Electronic Journal(2023)10.2139/ssrn.4401714

N/A

0DataRank · unranked

0 citations

Wenguang Luo, Hongyan Zhang, Jingjing Cheng, Alexandra P. Lewis, Wu yang +12 more

Framing the US-China trade war : a content analysis of news frames used in the United States and Chinese media

MOspace Institutional Repository (University of Missouri)(2019)10.32469/10355/72252

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0DataRank · unranked

0 citations

Alexandra P. Lewis

DNA Methylation is Involved in Sex Determination in Spinach

Biochemical Genetics(2023)10.1007/s10528-023-10524-4

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0DataRank · unranked

0 citations

Jiaming Duan, Guangqian Cheng, Alexandra P. Lewis, Shufen Li, Miao Hu +1 more

Supplementary Table 1 from Cancer-Derived Mutations in KEAP1 Impair NRF2 Degradation but not Ubiquitination

(2023)10.1158/0008-5472.22402104

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0DataRank

Top 100%0 citations

Erica W. Cloer, Dennis Goldfarb, Alexandra P. Lewis, Priscila F. Siesser, Feng Yan +5 more

Immune repertoires of de-identified TCGA tumor samples assembled by TRUST4

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6326136

Top 100%

0DataRank

Top 100%0 citations

Zhangyi Ouyang, David Cohen, Yang Cao, Jennifer Altreuter, Gali Bai +7 more

The Complete Genome of a Songbird

SSRN Electronic Journal(2025)10.2139/ssrn.5649439

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Nafiseh Jafarzadeh, Jack A. Medico, Marco Sollitto, Dmitry Antipov, Suzianne Barcellos +56 more

The rs34416841 polymorphism in the Alu element of the circSirt1 flanking intron is associated with an increased risk of myocardial infarction

BMC Medical Genomics(2025)10.1186/s12920-025-02291-5

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0DataRank · unranked

0 citations

Wen-cong Yang, Zhao-Fu Liao, Shu-Rou Zheng, Yun-Fei Qu, Alexandra P. Lewis +13 more

Generating non-jumps from a known one

Science China Mathematics(2024)10.1007/s11425-023-2196-x

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0DataRank · unranked

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Alexandra P. Lewis, Caihong Yang, Yixiao Zhang, Jianfeng Hou

Accurate SNV detection in single cells by transposon-based whole-genome amplification of complementary strands

Zenodo (CERN European Organization for Nuclear Research)(2021)10.5281/zenodo.4495991

N/A

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Longzhi Tan, Chi-Han Chang, Alexandra P. Lewis, Xiaoliang Xie, Dong Xing

Type II Glycoengineered Anti-CD20 Antibody MIL62 or Cyclosporine in Chinese Primary Membranous Nephropathy: A Multicenter, Randomized, Open-Label Phase 1b/2 Trial

Journal of the American Society of Nephrology(2024)10.1681/asn.2024yaqz098x

N/A

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Alexandra P. Lewis, Hua Zhou, Hong Li Lin, Guangqun Xing, Wei Chen +22 more

Accurate SNV detection in single cells by transposon-based whole-genome amplification of complementary strands

Zenodo (CERN European Organization for Nuclear Research)(2021)10.5281/zenodo.4495992

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Longzhi Tan, Chi-Han Chang, Alexandra P. Lewis, Xiaoliang Xie, Dong Xing

Supplementary Table 2 from Cancer-Derived Mutations in KEAP1 Impair NRF2 Degradation but not Ubiquitination

(2023)10.1158/0008-5472.22402101

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Erica W. Cloer, Dennis Goldfarb, Alexandra P. Lewis, Priscila F. Siesser, Feng Yan +5 more

Pangene graphs

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.8118577

N/A

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Alexandra P. Lewis

Supplementary Figure 1 from Cancer-Derived Mutations in KEAP1 Impair NRF2 Degradation but not Ubiquitination

INDIGO (University of Illinois at Chicago)(2023)10.1158/0008-5472.22402116.v1

N/A

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Erica W. Cloer, Dennis Goldfarb, Alexandra P. Lewis, Priscila F. Siesser, Feng Yan +5 more

Bibliometric analysis combined with visualization on universal trends and hot topics of LOX family in human diseases: 1995 to 2025

Frontiers in Oncology(2025)10.3389/fonc.2025.1601261

N/A

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Alexandra P. Lewis, Wenxuan Zhou, Ning Zhang, Zhenyu Tian, Heming Wang +4 more

Human assemblies evaluated in the hifiasm (Hi-C) paper

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.5948486

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Erich D. Jarvis, Olivier Fédrigo, Klaus‐Peter Koepfli, Lara Urban, Neil J. Gemmell +2 more

Cancer-Derived Mutations in KEAP1 Impair NRF2 Degradation but not Ubiquitination

UNC Libraries(2020)10.17615/pxah-bp58

N/A

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Erica W. Cloer, Dennis Goldfarb, Alexandra P. Lewis, Priscila F. Siesser, Feng Yan +5 more

HPRC Y1 assemblies (HiFi + UL) evaluated in the hifiasm (UL) paper

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.7996422

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Mobin Asri, Julian K. Lucas, Sergey Koren, Alexandra P. Lewis, Haoyu Cheng

Medical Devices

Encyclopedia of Biostatistics(2005)10.1002/0470011815.b2a01033

N/A

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Telba Z. Irony, Chang S. Lao, Alexandra P. Lewis, Gene Pennello, R. Lakshmi Vishnuvajjala +3 more

Exploratory analysis and error modeling of a sequencing technology

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/043042

N/A

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Kerrin S. Small, E. Shyong Tai, Alexandra P. Lewis, Nava Whiteford, Tom Skelly +10 more

Application of DH-PSF three-dimensional dynamic multi-particle tracking method in living cell imaging

Journal of Shenzhen University Science and Engineering(2017)10.3724/sp.j.1249.2017.05526

N/A

0DataRank · unranked

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Danni Chen, Bin Yu, Hanben Niu, Baoping Guo, Alexandra P. Lewis

The AP-1 Sigma Subunit Gene PsAP1 Acts as a Key Pathogenicity Factor by Regulating Metabolic Reprogramming in Puccinia striiformis f. sp. tritici

Journal of Fungi(2026)10.3390/jof12010057

N/A

0DataRank · unranked

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Jianing Wu, Guoshuai Zhang, Jianghua Chen, Guangkuo Li, Xintong Wang +8 more

Identifying centromeric satellites with dna-brnn

arXiv (Cornell University)(2019)10.48550/arxiv.1901.07327

N/A

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Alexandra P. Lewis

Higher rates of processed pseudogene acquisition in humans and three great apes revealed by long read assemblies

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.07.139212

N/A

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Alexandra P. Lewis, Xiaowen Feng

FM-index of ~400k SARS-CoV-2 genomes

OPAL (Open@LaTrobe) (La Trobe University)(2021)10.5281/zenodo.4771282

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Alexandra P. Lewis

PGP1 hifiasm assembly

Zenodo (CERN European Organization for Nuclear Research)(2021)10.5281/zenodo.5150755

N/A

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Alexandra P. Lewis, Haoyu Cheng

Additional file 2 of Identifying and correcting repeat-calling errors in nanopore sequencing of telomeres

Open MIND(2022)10.6084/m9.figshare.20677928

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Michael K. Slevin, Patrick D. McGillivray, Alexandra P. Lewis, Kar‐Tong Tan

Deinococcus rhizophilus sp.nov., isolated from rhizosphere soil

International Journal of Systematic and Evolutionary Microbiology(2024)10.1099/ijsem.0.006232

N/A

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Alexandra P. Lewis, Kai Tang, Tingting Zhang, Runze Bao, Fuying Feng +1 more

Supplementary Figure 3 from Cancer-Derived Mutations in KEAP1 Impair NRF2 Degradation but not Ubiquitination

(2023)10.1158/0008-5472.22402110

N/A

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Erica W. Cloer, Dennis Goldfarb, Alexandra P. Lewis, Priscila F. Siesser, Feng Yan +5 more

Protein-to-genome alignment with miniprot

arXiv (Cornell University)(2022)10.48550/arxiv.2210.08052

N/A

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Alexandra P. Lewis

Deciphering Mechanism of Buyang Huanwu Decoction in Regulating Macrophage Polarization to Alleviate Atherosclerosis Via Virtual Screening and Experimental Verification

SSRN Electronic Journal(2024)10.2139/ssrn.4993024

N/A

0DataRank · unranked

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Xiangyang Cao, Yuhan Zhang, Yisa Cai, Alexandra P. Lewis, Yicheng Ma +9 more

Pangene graphs

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.10038994

N/A

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0 citations

Alexandra P. Lewis

Pangene graphs

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.8170344

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Alexandra P. Lewis

Association of Serum Calcium Levels With Renal Impairment and All-cause Death in Chinese Patients With Newly Diagnosed Multiple Myeloma: A Cross-sectional, Longitudinal Study

Research Square (Research Square)(2020)10.21203/rs.3.rs-34677/v1

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Wen Zhang, Yi Zhao, Xiayu Li, Rong Lv, Alexandra P. Lewis +2 more

DLX1 acts as a novel prognostic biomarker involved in immune cell infiltration and tumor progression in lung adenocarcinoma

PeerJ(2024)10.7717/peerj.16823

N/A

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Alexandra P. Lewis, Yan Wang, Yunyan He, Gaofeng Li, Yu Du

Data from Comprehensive Characterizations of Immune Receptor Repertoire in Tumors and Cancer Immunotherapy Studies

(2023)10.1158/2326-6066.c.6550716.v1

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Zhangyi Ouyang, David Cohen, Yang Cao, Jennifer Altreuter, Gali Bai +7 more

Exploring gene content with pangene graphs

PubMed(2024)10.48550/arxiv.2402.16185

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Maximillian G. Marin, Maha R. Farhat, Alexandra P. Lewis

Pangene graphs

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.8194667

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Alexandra P. Lewis

Hysteresis study and self-healing behavior of novel perovskite solar cells

International Photonics and OptoElectronics(2015)10.1364/pfe.2015.pt4a.2

N/A

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Yicheng Zhao, Alexandra P. Lewis, Yin Yan, Jing Wei, Dapeng Yu +2 more

Complete plastid genome of Holcoglossum tsii (Orchidaceae, Aeridinae) and phylogenetic analysis

Mitochondrial DNA Part B(2019)10.1080/23802359.2019.1700838

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Ming Xie, Sheng-Ting Guo, Xiao-Yong Zheng, Alexandra P. Lewis, Yongbin Chen

Machine learning-based evaluation of risk factors for carbapenem-resistant Klebsiella pneumoniae dissemination in neonatal units

mSystems(2025)10.1128/msystems.00909-25

N/A

0DataRank · unranked

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Muxiu Jiang, Jinzhi Zhang, Alexandra P. Lewis, Yina Liu, Jiaqi Zhang +8 more

Human assemblies evaluated in the hifiasm (Hi-C) paper

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.5948487

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Erich D. Jarvis, Olivier Fédrigo, Klaus‐Peter Koepfli, Lara Urban, Neil J. Gemmell +2 more

A new species of Rubia (Rubiaceae) from western Yunnan, China

Phytotaxa(2013)10.11646/phytotaxa.140.1.5

N/A

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Alexandra P. Lewis, Rong Li

Dynamic Routing Strategies based on Hierarchical Kautz Graph

Journal of Convergence Information Technology(2012)10.4156/jcit.vol7.issue11.1

N/A

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Guoyin Zhang, Alexandra P. Lewis, Zhang GuoYin -

Supplementary Figure from Comprehensive Characterizations of Immune Receptor Repertoire in Tumors and Cancer Immunotherapy Studies

(2023)10.1158/2326-6066.22544670

N/A

0DataRank · unranked

0 citations

Zhangyi Ouyang, David Cohen, Yang Cao, Jennifer Altreuter, Gali Bai +7 more

The Type II Glycoengineered Anti-CD20 Antibody MIL62 or Cyclosporine in Chinese Primary Membranous Nephropathy: Updated Results of an Ongoing, Multicenter, Randomized, Open-Label Phase 1b/2 Trial

Journal of the American Society of Nephrology(2023)10.1681/asn.20233411s1988a

N/A

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Zhao Cui, Alexandra P. Lewis, Hua Zhou, Hong L. Lin, Guangqun Xing +23 more

Deficiency of DSP, An IPF Susceptibility Gene, Promotes Pulmonary Fibrosis

C28. MORE THAN MEET THE EYE: NOVEL INSIGHTS IN IPF PATHOGENESIS(2024)10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a5198

N/A

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Y. Yu, J. Wang, A.X. Zhou, Alexandra P. Lewis, Yang Yu +1 more

CCDC 2144691: Experimental Crystal Structure Determination

The Cambridge Structural Database(2022)10.5517/ccdc.csd.cc29zqlm

N/A

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Alexandra P. Lewis

Data from Comprehensive Characterizations of Immune Receptor Repertoire in Tumors and Cancer Immunotherapy Studies

(2023)10.1158/2326-6066.c.6550716

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Zhangyi Ouyang, David Cohen, Yang Cao, Jennifer Altreuter, Gali Bai +7 more

PCR and mapping duplicate rate in NGS

OPAL (Open@LaTrobe) (La Trobe University)(2014)10.6084/m9.figshare.1198456.v1

N/A

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Alexandra P. Lewis

Supplementary Figure 2 from Cancer-Derived Mutations in KEAP1 Impair NRF2 Degradation but not Ubiquitination

INDIGO (University of Illinois at Chicago)(2023)10.1158/0008-5472.22402113.v1

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Erica W. Cloer, Dennis Goldfarb, Alexandra P. Lewis, Priscila F. Siesser, Feng Yan +5 more

DMF-mediated synthesis of N,S-co-doped carbon quantum dots and their fluorescence quenching mechanism toward Hg 2+ via surface complexation

RSC Advances(2026)10.1039/d5ra08448b

N/A

0DataRank · unranked

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Shancai Guo, Teng Wang, Jianyuan Lin, Zhijian Jia, Fuhang Xu +6 more

Sample graphs and sequences for testing sequence-to-graph alignment

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6056061

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Alexandra P. Lewis

Sample graphs and sequences for testing sequence-to-graph alignment

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.5976062

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Alexandra P. Lewis

Supplementary Figure 2 from Cancer-Derived Mutations in KEAP1 Impair NRF2 Degradation but not Ubiquitination

(2023)10.1158/0008-5472.22402113

N/A

0DataRank · unranked

0 citations

Erica W. Cloer, Dennis Goldfarb, Alexandra P. Lewis, Priscila F. Siesser, Feng Yan +5 more

FermiKit: assembly-based variant calling for Illumina resequencing data

arXiv (Cornell University)(2015)10.48550/arxiv.1504.06574

N/A

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Alexandra P. Lewis

AGC archives of human and SARS-CoV-2 genomes

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.5826273

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Agnieszka Danek, Alexandra P. Lewis, Sebastian Deorowicz

Human assemblies evaluated in the hifiasm paper

Zenodo (CERN European Organization for Nuclear Research)(2020)10.5281/zenodo.4393630

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Gregory T. Concepcion, Xiaowen Feng, Haowen Zhang, Alexandra P. Lewis, Haoyu Cheng

[Retracted] MicroRNA‑936 inhibits the malignant phenotype of retinoblastoma by directly targeting HDAC9 and deactivating the PI3K/AKT pathway

Oncology Reports(2022)10.3892/or.2022.8389

N/A

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Weidong Li, Qian Shi, Minfeng Wang, Alexandra P. Lewis, Xiaoli Yang +2 more

Ligusticum gongshanense sp. nov. (Umbelliferae) from western Yunnan, China

Nordic Journal of Botany(2012)10.1111/j.1756-1051.2011.01338.x

N/A

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Fa‐Ding Pu, Alexandra P. Lewis, Rong Li

Devider: Long-Read Reconstruction of Many Diverse Haplotypes

Lecture Notes in Computer Science(2025)10.1007/978-3-031-90252-9_24

N/A

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Christina Boucher, Yun William Yu, Noelle Noyes, Alexandra P. Lewis, Jim Shaw

Supplementary Table 1 from Cancer-Derived Mutations in KEAP1 Impair NRF2 Degradation but not Ubiquitination

INDIGO (University of Illinois at Chicago)(2023)10.1158/0008-5472.22402104.v1

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Erica W. Cloer, Dennis Goldfarb, Alexandra P. Lewis, Priscila F. Siesser, Feng Yan +5 more

Yak k-mer dumps for partition human chrX/Y in de novo assemblies

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.7882298

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Alexandra P. Lewis

Assemblies evaluated in the wtdbg2 paper

Zenodo (CERN European Organization for Nuclear Research)(2021)10.5281/zenodo.4419950

N/A

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Alexandra P. Lewis, Jue Ruan

Extremely low-coverage sequencing and imputation increases power for genome-wide association studies

UNC Libraries(2020)10.17615/haws-ma91

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Nicholas Mancuso, Paul J. McLaren, Kiran Garimella, Noah Zaitlen, Alexandra P. Lewis +19 more

Additional file 5: of The altered gut virome community in rhesus monkeys is correlated with the gut bacterial microbiome and associated metabolites

Figshare(2019)10.6084/m9.figshare.9692027

N/A

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Hongzhe Li, Jingjing Wang, Lei Guo, Haitao Fan, Huiwen Zheng +11 more

Medical Devices

Wiley StatsRef: Statistics Reference Online(2018)10.1002/9781118445112.stat04944.pub2

N/A

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Alexandra P. Lewis, Gene Pennello, Lilly Q. Yue, Gregory Campbell

TDeLTA: A Light-weight and Robust Table Detection Method based on Learning Text Arrangement

arXiv (Cornell University)(2023)10.48550/arxiv.2312.11043

N/A

0DataRank · unranked

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Xiangping Wu, Qingcai Chen, Alexandra P. Lewis, Yan Huang, Zhixiang Cai +2 more

Supplementary Table 2 from Cancer-Derived Mutations in KEAP1 Impair NRF2 Degradation but not Ubiquitination

INDIGO (University of Illinois at Chicago)(2023)10.1158/0008-5472.22402101.v1

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Erica W. Cloer, Dennis Goldfarb, Alexandra P. Lewis, Priscila F. Siesser, Feng Yan +5 more

Additional file 8: of The altered gut virome community in rhesus monkeys is correlated with the gut bacterial microbiome and associated metabolites

Figshare(2019)10.6084/m9.figshare.9692051

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Hongzhe Li, Jingjing Wang, Lei Guo, Haitao Fan, Huiwen Zheng +11 more

Non-human assemblies evaluated in the hifiasm (Hi-C) paper

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.5953248

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Erich D. Jarvis, Olivier Fédrigo, Klaus‐Peter Koepfli, Lara Urban, Neil J. Gemmell +2 more

ChemInform Abstract: Iterative Dianion Relay Along the Ring: Formation of gem‐Bis(trimethylsilyl) Cyclopentenones from 2,5‐Bis(trimethylsilyl) Oxycyclopentadienyl Dianions and Acid Chlorides.

ChemInform(2011)10.1002/chin.201145174

N/A

0DataRank · unranked

0 citations

Lantao Liu, Zitao Wang, Fei Zhao, Shaoguang Zhang, Wen‐Xiong Zhang +2 more

PCR and mapping duplicate rate in NGS

Figshare(2014)10.6084/m9.figshare.1198456

N/A

0DataRank · unranked

0 citations

Alexandra P. Lewis

Supplementary Figure 1 from Cancer-Derived Mutations in KEAP1 Impair NRF2 Degradation but not Ubiquitination

(2023)10.1158/0008-5472.22402116

N/A

0DataRank · unranked

0 citations

Erica W. Cloer, Dennis Goldfarb, Alexandra P. Lewis, Priscila F. Siesser, Feng Yan +5 more

hifiasm-meta manuscript companion data: assemblies, binning and evaluations

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6330282

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Haoyu Zhang, Daniel M. Portik, Alexandra P. Lewis, Xiaowen Feng

Arisaema lushuiense sp. nov. (Araceae) from Gaoligong Mountains in Yunnan, China

Nordic Journal of Botany(2012)10.1111/j.1756-1051.2012.01492.x

N/A

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0 citations

Alexandra P. Lewis, Chunlin Long, Guang‐Wan HU

Minigraph pangenome graphs for HPRC samples

Zenodo (CERN European Organization for Nuclear Research)(2025)10.5281/zenodo.6286521

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Hickey, Glenn, Alexandra P. Lewis

The Causal Association Between Gestational Diabetes Mellitus and Arthritis: A Bidirectional Two-Sample Mendelian Randomization Analysis

Research Square(2023)10.21203/rs.3.rs-2958612/v1

N/A

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Jiewen Zhang, Xudong Duan, Ruomu Cao, Ning Kong, Yiyang Li +8 more

RETRACTED: Corrigendum to “Lipopolysaccharide-induced podocyte injury is regulated by calcineurin/NFAT and TLR4/MyD88/NF-κB signaling pathways through Angiopoietin-like protein 4” [Genes Dis DOI: 10.1016/j.gendis.2020.07.005]

Genes & Diseases(2022)10.1016/j.gendis.2021.09.001

N/A

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0 citations

Chunhua Weng, Yucheng Wang, Cuili Wang, Shi Feng, Xiayu Li +5 more

Supplementary Figure Legend from Cancer-Derived Mutations in KEAP1 Impair NRF2 Degradation but not Ubiquitination

INDIGO (University of Illinois at Chicago)(2023)10.1158/0008-5472.22402107.v1

N/A

0DataRank · unranked

0 citations

Erica W. Cloer, Dennis Goldfarb, Alexandra P. Lewis, Priscila F. Siesser, Feng Yan +5 more

Pangene graphs

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.8126999

N/A

0DataRank · unranked

0 citations

Alexandra P. Lewis

FM-index of ~400k SARS-CoV-2 genomes

Zenodo (CERN European Organization for Nuclear Research)(2021)10.5281/zenodo.4771281

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Alexandra P. Lewis

Immune repertoires of de-identified TCGA tumor samples assembled by TRUST4

Zenodo (CERN European Organization for Nuclear Research)(2024)10.5281/zenodo.6326135

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Zhangyi Ouyang, David Cohen, Yang Cao, Jennifer Altreuter, Gali Bai +7 more

#3776 THE TYPE Ⅱ ANTI-CD20 MONOCLONAL ANTIBODY MIL62 OR CYCLOSPORINE IN CHINESE PRIMARY MEMBRANOUS NEPHROPATHY: PRELIMINARY RESULTS OF A PHASE ⅠB/Ⅱ TRIAL

Nephrology Dialysis Transplantation(2023)10.1093/ndt/gfad063c_3776

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Yimiao Zhang, Alexandra P. Lewis, Hua Zhou, Hongli Lin, Guangqun Xing +21 more

Targeted long-read sequencing resolves complex structural variants and identifies missing disease-causing variants

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.03.365395

N/A

0DataRank · unranked

10 citations

Arvis Sulovari, Tianyun Wang, Hailey Loucks, Kendra Hoekzema, Katherine M. Munson +32 more

Opposing selective forces operating on human-specific duplicated TCAF genes in Neanderthals and humans

Research Square(2020)10.21203/rs.3.rs-77798/v1

N/A

0DataRank · unranked

2 citations

Vy Dang, Mitchell R. Vollger, Yafei Mao, Tzu‐Hsueh Huang, Philip C. Dishuck +9 more

Non-Invasive Fetal Genome Sequencing: Opportunities and Challenges

(2020)10.4324/9781003074984-13

N/A

0DataRank · unranked

0 citations

Jeffrey C. Murray, Hilary S. Gammill, Jacob O. Kitzman, Matthew W. Snyder, Mario Ventura +10 more

Exome Sequencing Identifies Mutations in CCDC114 as a Cause of Primary Ciliary Dyskinesia

UNC Libraries(2021)10.17615/c3t0-gh30

N/A

0DataRank · unranked

0 citations

Maimoona A. Zariwala, Johnny L. Carson, Margaret Rosenfeld, Stephanie D. Davis, Margaret W. Leigh +16 more

The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.30.569198

N/A

0DataRank · unranked

24 citations

Brandon D. Pickett, Robert S. Harris, Gabrielle A. Hartley, Monika Čechová, Karol Pal +78 more

Independent expansion, selection and hypervariability of the TBC1D3 gene family in humans

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.12.584650

N/A

0DataRank · unranked

2 citations

David Porubsky, DongAhn Yoo, Max L. Dougherty, Philip C. Dishuck, Katherine M. Munson +7 more

Structural polymorphism and diversity of human segmental duplications

Nature Genetics(2025)10.1038/s41588-024-02051-8

N/A

0DataRank · unranked

35 citations

Philip C. Dishuck, DongAhn Yoo, William T. Harvey, Katherine M. Munson, Alexandra P. Lewis +8 more

Structural variation, selection, and diversification of the NPIP gene family from the human pangenome

Cell Genomics(2025)10.1016/j.xgen.2025.100977

N/A

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7 citations

Katherine M. Munson, Alexandra P. Lewis, Max L. Dougherty, Jason G. Underwood, William T. Harvey +4 more

Structural variation, selection, and diversification of the NPIP gene family from the human pangenome

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.04.636496

N/A

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3 citations

Katherine M. Munson, Alexandra P. Lewis, Max L. Dougherty, Jason G. Underwood, William T. Harvey +4 more

Alexandra P. Lewis

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