Orr Ashenberg

Also affiliated with Klarman Cell Observatory

Biochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

15.7Author DataRank

Indexed papers

7in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

Cell(2020)10.1016/j.cell.2020.03.053

Top 4%

5.6DataRank

Top 4%609 citations

Aviv Regev, Philipp Oberdoerffer, Tal Nawy, Anna Hupalowska, Jennifer E. Rood +92 more

Papers

Driven by 43 papers — median percentile 84. Top paper: “Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics”.

Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics

Nature Medicine(2021)10.1038/s41591-020-01227-z

N/A

8.2DataRank · unranked

378 citations

Malte D. Luecken, Gökcen Eraslan, Lisa Sikkema, Avinash Waghray, Graham Heimberg +95 more

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

Cell(2020)10.1016/j.cell.2020.03.053

Top 4%

5.6DataRank

Top 4%609 citations

Aviv Regev, Philipp Oberdoerffer, Tal Nawy, Anna Hupalowska, Jennifer E. Rood +92 more

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

Nature Medicine(2020)10.1038/s41591-020-0844-1

Top 4%

5.6DataRank

Top 4%819 citations

Caroline B. M. Porter, Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro +45 more

B-cell-specific checkpoint molecules that regulate anti-tumour immunity

Nature(2023)10.1038/s41586-023-06231-0

N/A

4.1DataRank · unranked

171 citations

Yoon-Chul Kye, Jingwen Shi, Elena Torlai Triglia, Alexandra Schnell, Johannes Fessler +22 more

Single-Cell RNA-Seq Reveals Cellular Hierarchies and Impaired Developmental Trajectories in Pediatric Ependymoma

Cancer Cell(2020)10.1016/j.ccell.2020.06.004

N/A

3.8DataRank · unranked

165 citations

Bernhard Englinger, Li Jiang, Jens M Hübner, Olivia A. Hack, Sibylle Madlener +38 more

A Distinct Transcriptional Program in Human CAR T Cells Bearing the 4-1BB Signaling Domain Revealed by scRNA-Seq

Molecular Therapy(2020)10.1016/j.ymthe.2020.07.023

N/A

3.3DataRank · unranked

111 citations

Rebecca C. Larson, Nemanja Despot Marjanovic, Kirk Gosik, Ana P. Castano, Selena J. Lorrey +17 more

Blood and immune development in human fetal bone marrow and Down syndrome

Nature(2021)10.1038/s41586-021-03929-x

N/A

3.2DataRank · unranked

160 citations

Simone Webb, Issac Goh, Mariana Quiroga Londoño, Gary Reynolds, Michael Mather +60 more

A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/761429

N/A

2.5DataRank · unranked

68 citations

Orr Ashenberg, Julia Waldman, Eugene Drokhlyansky, Isaac Wakiro, Indresh Singh +44 more

A single cell atlas of human and mouse white adipose tissue

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.09.466968

N/A

2.0DataRank · unranked

57 citations

Christopher Jacobs, Adam L. Essene, Deepti Pant, Danielle Tenen, Georgia Colleluori +38 more

MITI minimum information guidelines for highly multiplexed tissue images

Nature Methods(2022)10.1038/s41592-022-01415-4

N/A

1.7DataRank · unranked

88 citations

Clarence Yapp, Artem Sokolov, Sheila M. Reynolds, Yu-An Chen, Damir Sudar +95 more

Single-nucleus and spatial transcriptomics of archival pancreatic cancer reveals multi-compartment reprogramming after neoadjuvant treatment

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.25.267336

N/A

1.6DataRank · unranked

35 citations

Karthik A. Jagadeesh, Jimmy A. Guo, Hannah I. Hoffman, Payman Yadollahpour, Rahul Mohan +46 more

A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

Nature Medicine(2024)10.1038/s41591-024-03215-z

Top 15%

1.3DataRank

Top 15%91 citations

Daniel L. Abravanel, Åsa Segerstolpe, Timothy R. Blosser, Yury Goltsev, Yi Cui +57 more

Single-nucleus cross-tissue molecular reference maps to decipher disease gene function

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.19.452954

Top 16%

1.3DataRank

Top 16%27 citations

Eugene Drokhlyansky, Shankara Anand, Ayshwarya Subramanian, Evgenij Fiskin, Michal Slyper +19 more

An esophagus cell atlas reveals dynamic rewiring during active eosinophilic esophagitis and remission

Nature Communications(2024)10.1038/s41467-024-47647-0

N/A

1.3DataRank · unranked

57 citations

John J. Garber, Amiko Uchida, Ariel Lefkovith, Grace T. Carter, Praveen Vimalathas +14 more

Neuropeptide signalling orchestrates T cell differentiation

Nature(2024)10.1038/s41586-024-08049-w

N/A

1.2DataRank · unranked

64 citations

Lin-Yu Sun, Martin W. LaFleur, Linglin Huang, Conner Lambden, Pratiksha I. Thakore +20 more

A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia

Cell(2019)10.1016/j.cell.2019.04.040

N/A

1.0DataRank · unranked

905 citations

Dariusz Przybylski, Monika S. Kowalczyk, Youmna Kfoury, Nicolas Severe, Karin Gustafsson +16 more

A single-cell landscape of high-grade serous ovarian cancer

Nature Medicine(2020)10.1038/s41591-020-0926-0

N/A

0.938DataRank · unranked

518 citations

Itay Tirosh, Elizabeth H. Stover, Isaac Wakiro, Michael S. Cuoco, Idan Alter +30 more

A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.07.574538

Top 22%

0.898DataRank

Top 22%34 citations

Orr Ashenberg, Natalie B. Collins, Åsa Segerstolpe, Sizun Jiang, Michal Slyper +53 more

Inhibitory CD161 receptor identified in glioma-infiltrating T cells by single-cell analysis

Cell(2021)10.1016/j.cell.2021.01.022

N/A

0.897DataRank · unranked

394 citations

Orr Ashenberg, Itay Tirosh, Simon Gritsch, Elizabeth M. Perez, Sascha Marx +38 more

Emergence of a High-Plasticity Cell State during Lung Cancer Evolution

Cancer Cell(2020)10.1016/j.ccell.2020.06.012

N/A

0.896DataRank · unranked

393 citations

Matan Hofree, Jason E. Chan, David A. Canner, Katherine Wu, Marianna Trakala +33 more

Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq

Nature Methods(2020)10.1038/s41592-020-0905-x

N/A

0.837DataRank · unranked

264 citations

Joshua Gould, Yiming Yang, Siranush Sarkizova, Marcin Tabaka, Orr Ashenberg +9 more

Mouse fetal growth restriction through parental and fetal immune gene variation and intercellular communications cascade

Nature Communications(2022)10.1038/s41467-022-32171-w

N/A

0.813DataRank · unranked

23 citations

Orr Ashenberg, Jack Lee, Samantha J. Riesenfeld, Matan Hofree, Maria Aggelakopoulou +21 more

A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.27.514070

N/A

0.677DataRank · unranked

16 citations

Dimitra Karagkouni, Nikolaos Kalavros, Johannes C. Melms, Sebastian Niezen, Toni Marie Delorey +63 more

Author Correction: A single-cell atlas of human and mouse white adipose tissue

Nature(2023)10.1038/s41586-023-06445-2

Top 34%

0.569DataRank

Top 34%13 citations

Christopher Jacobs, Adam L. Essene, Deepti Pant, Danielle Tenen, Georgia Colleluori +38 more

Rapid CLIP dissociation from MHC II promotes an unusual antigen presentation pathway in autoimmunity

Journal of Experimental Medicine(2018)10.1084/jem.20180300

N/A

0.489DataRank · unranked

25 citations

Orr Ashenberg, Jason Pyrdol, Adrienne M. Luoma, Matan Hofree, Elena Christian +10 more

A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients

Genome Biology(2025)10.1186/s13059-025-03499-5

N/A

0.363DataRank · unranked

7 citations

Dimitra Karagkouni, Nikolaos Kalavros, Johannes C. Melms, Sebastian Niezen, Toni Marie Delorey +70 more

A cellular and spatial atlas of TP53-associated tissue remodeling defines a multicellular tumor ecosystem in lung adenocarcinoma

Nature Cancer(2025)10.1038/s43018-025-01053-7

N/A

0.351DataRank · unranked

9 citations

Thinh T. Nguyen, Atharva Bhagwat, Akhil Kumar, Bruno Giotti, Benjamin Kepecs +29 more

A cellular and spatial atlas of TP53 -associated tissue remodeling in lung adenocarcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.28.546977

Top 50%

0.349DataRank

Top 50%5 citations

Benjamin Kepecs, Navin R. Mahadevan, Jason L. Weirather, Naomi R. Besson, Bruno Giotti +19 more

Parental-fetal interplay of immune genes leads to intrauterine growth restriction

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.26.437292

N/A

0.126DataRank · unranked

1 citations

Orr Ashenberg, Jack Lee, Samantha J. Riesenfeld, Matan Hofree, Maria Aggelakopoulou +20 more

SlideCNA: spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data

Genome Biology(2025)10.1186/s13059-025-03573-y

N/A

0.107DataRank · unranked

1 citations

Åsa Segerstolpe, Michal Slyper, Julia Waldman, Evan Murray, Robert Strasser +16 more

Author Correction: A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

Nature Medicine(2025)10.1038/s41591-025-03665-z

N/A

0.104DataRank · unranked

1 citations

Daniel L. Abravanel, Åsa Segerstolpe, Timothy R. Blosser, Yury Goltsev, Yi Cui +57 more

Correction of age-associated defects in dendritic cells enables CD4+ T cells to eradicate tumors

Cell(2024)10.1016/j.cell.2024.05.026

N/A

0DataRank · unranked

84 citations

Stephanie N. Kennedy, J. Park, Francesco Boriello, Pascal Devant, Anh Cao +10 more

Identification of specific microbiota members that induce beige fat biogenesis in response to dietary cues

Research Square(2024)10.21203/rs.3.rs-5454144/v1

N/A

0DataRank · unranked

0 citations

Takeshi Tanoue, Manabu Nagayama, Ayumi Roochana, Samuel Zimmerman, Orr Ashenberg +25 more

Prevalent cross-cell type QTL trans -regulatory genetic effects impacting innate lymphoid cells in the small intestine

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.16.649031

N/A

0DataRank · unranked

0 citations

Kirk Gosik, Yang Zang, Orr Ashenberg, Chenhao Li, Hongjun Li +14 more

Nuclear receptor coregulator NRIP1 R448G modulates T cell gut homing to control intestinal inflammation

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2508269122

N/A

0DataRank · unranked

0 citations

Hee Seung Hwang, Bihua Li, Yanhua Zhao, Koushik Ghosh, Lei Deng +5 more

Single-nucleus RNA-seq of frozen archival primary pancreatic ductal adenocarcinoma uncovers multi-compartment intratumoral heterogeneity associated with neoadjuvant treatment.

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.15_suppl.4633

N/A

0DataRank · unranked

0 citations

Hannah I. Hoffman, Orr Ashenberg, Eugene Drokhlyansky, Nicholas Van Wittenberghe, Samouil Farhi +18 more

Author Correction: B-cell-specific checkpoint molecules that regulate anti-tumour immunity

Nature(2025)10.1038/s41586-025-08858-7

N/A

0DataRank · unranked

0 citations

Yoon-Chul Kye, Jingwen Shi, Elena Torlai Triglia, Alexandra Schnell, Johannes Fessler +22 more

HTAPP_Designing gene panels for neuroblastoma targeted spatial transcriptomics assays v1

(2021)10.17504/protocols.io.bw86phze

N/A

0DataRank · unranked

0 citations

Orr Ashenberg, Anand G. Patel, Natalie Collins, Xiaowei Zhuang, Orit Rozenblatt–Rosen +6 more

EPEN-21. IMPAIRED NEURONAL-GLIAL FATE SPECIFICATION IN PEDIATRIC EPENDYMOMA REVEALED BY SINGLE-CELL RNA-SEQ

Neuro-Oncology(2020)10.1093/neuonc/noaa222.158

N/A

0DataRank · unranked

0 citations

Johannes Gojo, Li Jiang, Jens M Hübner, Olivia A. Hack, Sibylle Madlener +35 more

OTME-8. Inhibitory CD161 receptor identified in glioma-infiltrating T cells by single-cell analysis

Neuro-Oncology Advances(2021)10.1093/noajnl/vdab070.059

N/A

0DataRank · unranked

0 citations

Orr Ashenberg, Elizabeth Perez, Sascha Marx, Prisca Liberali, Nathan D. Mathewson +5 more

SlideCNA: Spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.25.517982

N/A

0DataRank · unranked

0 citations

Åsa Segerstolpe, Michal Slyper, Julia Waldman, Evan Murray, Ofir Cohen +13 more

The landscape of immune dysregulation in Crohn’s disease revealed through single-cell transcriptomic profiling in the ileum and colon

Immunity(2023)10.1016/j.immuni.2023.01.002

N/A

0DataRank · unranked

269 citations

Vladislav Pokatayev, Ariel Lefkovith, Grace T. Carter, Elizabeth A. Creasey, Chirag Krishna +9 more

EPCO-35. SINGLE-CELL RNA-SEQ OF PEDIATRIC EPENDYMOMA REVEALS PROGNOSTIC IMPACT OF IMPAIRED NEURONAL-GLIAL FATE SPECIFICATION

Neuro-Oncology(2020)10.1093/neuonc/noaa215.314

N/A

0DataRank · unranked

0 citations

Johannes Gojo, Li Jiang, Jens M Hübner, McKenzie Shaw, Ilon Liu +38 more

Orr Ashenberg

Indexed papers

Top data-sharing exemplar

Papers