Jacob Rose

ChemistryMedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 41 papers. Top paper: “OXR1 maintains the retromer to delay brain aging under dietary restriction”.

OXR1 maintains the retromer to delay brain aging under dietary restriction

Nature Communications(2024)10.1038/s41467-023-44343-3

N/A

0.622DataRank · unranked

17 citations

Sudipta Bar, Eric B. Dammer, Enrique M. Carrera, Brian A. Hodge, Tyler Hilsabeck +19 more

Molecular and Cellular Crosstalk between Bone and Brain: Accessing Bidirectional Neural and Musculoskeletal Signaling during Aging and Disease

Journal of Bone Metabolism(2023)10.11005/jbm.2023.30.1.1

N/A

0.529DataRank · unranked

33 citations

Jordan B. Burton, Jacob Rose, Lisa Ellerby, Tamara Alliston, Birgit Schilling +1 more

Substrate stiffness dictates unique doxorubicin-induced senescence-associated secretory phenotypes and transcriptomic signatures in human pulmonary fibroblasts

GeroScience(2025)10.1007/s11357-025-01507-x

N/A

0.409DataRank · unranked

11 citations

Jacob Rose, Joanna Bons, Guo Li, Taylor R. Valentino, Fei Wu +13 more

Regulation of Chondrocyte Metabolism and Osteoarthritis Development by Sirt5 Through Protein Lysine Malonylation

Arthritis & Rheumatology(2025)10.1002/art.43164

N/A

0.396DataRank · unranked

13 citations

Anupama Binoy, Siqi Ren, T. Martino, Anna E. Miller, Craig R. G. Willis +7 more

Concerted changes in Epithelium and Stroma: a multi-scale, multi-omics analysis of progression from Barrett’s Esophagus to adenocarcinoma

Developmental Cell(2025)10.1016/j.devcel.2025.06.034

N/A

0.345DataRank · unranked

9 citations

David L. Gibbs, Philippe Gascard, Joanna Bons, John W. Hickey, Deng Pan +37 more

Deep Coverage and Quantification of the Bone Proteome Provides Enhanced Opportunities for New Discoveries in Skeletal Biology and Disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.20.517228

N/A

0.241DataRank · unranked

4 citations

Charles A. Schurman, Christina D. King, Joanna Bons, Jordan B. Burton, Sandip Kumar Patel +4 more

Protocol for mass spectrometric profiling of lysine malonylation by lysine acetyltransferase in CRISPRi K562 cell lines

STAR Protocols(2024)10.1016/j.xpro.2024.103074

N/A

0.104DataRank · unranked

1 citations

Joanna Bons, Jacob Rose, Birgit Schilling, Eric Verdin, Ran Zhang

Histone malonylation is regulated by SIRT5 and KAT2A

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.07.495150

N/A

0DataRank · unranked

6 citations

Joanna Bons, Olga Bielska, Chris Carrico, Jacob Rose, Indra Heckenbach +4 more

Data-Independent Acquisition and Quantification of Extracellular Matrix from Human Lung in Chronic Inflammation-Associated Carcinomas

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.05.503012

N/A

0DataRank · unranked

2 citations

Deng Pan, Samah Shah, Rosemary Bai, Chira Chen‐Tanyolac, Xianhong Wang +12 more

Regulation of urea cycle by reversible high stoichiometry lysine succinylation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.24.497535

N/A

0DataRank · unranked

1 citations

Xueshu Xie, Chris Carrico, Jesse G. Meyer, Lei Wei, Joanna Bons +11 more

OXR1 maintains the retromer to delay brain aging under dietary restriction

Research Square(2022)10.21203/rs.3.rs-1455343/v1

N/A

0DataRank · unranked

0 citations

Kenneth A. Wilson, Sudipta Bar, Eric B. Dammer, Brian A. Hodge, Enrique M. Carrera +16 more

Ketohexokinase-C regulates global protein acetylation to decrease carnitine palmitoyltransferase 1a-mediated fatty acid oxidation

Journal of Hepatology(2023)10.1016/j.jhep.2023.02.010

N/A

0DataRank · unranked

57 citations

Sehyung Park, Hemendra J. Vekaria, Patrick G. Sullivan, Lindsey R. Conroy, Ramon C. Sun +10 more

Histone malonylation is regulated by SIRT5 and KAT2A

iScience(2023)10.1016/j.isci.2023.106193

N/A

0DataRank · unranked

34 citations

Joanna Bons, Grace Scheidemantle, Xiaojing Liu, Olga Bielska, Chris Carrico +6 more

Proteomic quantification of native and ECM-enriched mouse ovaries reveals an age-dependent fibro-inflammatory signature

Aging(2023)10.18632/aging.205190

N/A

0DataRank · unranked

33 citations

Christina D. King, Jacob Rose, Joanna E. Burdette, Judith Campisi, Birgit Schilling +2 more

Proteomic Analysis of Huntington’s Disease Medium Spiny Neurons Identifies Alterations in Lipid Droplets

Molecular & Cellular Proteomics(2023)10.1016/j.mcpro.2023.100534

N/A

0DataRank · unranked

35 citations

Carlos Galicia Aguirre, Joanna Bons, Akos A. Gerencser, Nathan Basisty, Sicheng Song +13 more

Fructose induced KHK-C can increase ER stress independent of its effect on lipogenesis to drive liver disease in diet-induced and genetic models of NAFLD

Metabolism(2023)10.1016/j.metabol.2023.155591

N/A

0DataRank · unranked

29 citations

Robert N. Helsley, Taghreed Fadhul, Jennifer L. S. Willoughby, Leila Noetzli, Ho-Chou Tu +18 more

Dicarboxylic Acid Dietary Supplementation Protects against AKI

Journal of the American Society of Nephrology(2023)10.1681/asn.0000000000000266

N/A

0DataRank · unranked

21 citations

Katherine Pfister, Takuto Chiba, Joanna Bons, Jacob Rose, Jordan B. Burton +12 more

Substantial downregulation of mitochondrial and peroxisomal proteins during acute kidney injury revealed by data‐independent acquisition proteomics

PROTEOMICS(2023)10.1002/pmic.202300162

N/A

0DataRank · unranked

19 citations

Anne C. Silva Barbosa, Joanna Bons, Jacob Rose, Katherine Pfister, Fabia Simona +8 more

Deep coverage and quantification of the bone proteome provides enhanced opportunities for new discoveries in skeletal biology and disease

PLoS ONE(2023)10.1371/journal.pone.0292268

N/A

0DataRank · unranked

17 citations

Charles A. Schurman, Christina D. King, Joanna Bons, Sandip Kumar Patel, Jordan B. Burton +4 more

Proteomic analysis of X-linked dystonia parkinsonism disease striatal neurons reveals altered RNA metabolism and splicing

Neurobiology of Disease(2023)10.1016/j.nbd.2023.106367

N/A

0DataRank · unranked

9 citations

Joanna Bons, Carlos Galicia Aguirre, Cristian Gerónimo‐Olvera, Samah Shah, Jacob Rose +7 more

Role of the Senescence-Associated Factor Dipeptidyl Peptidase 4 in the Pathogenesis of SARS-CoV-2 Infection

Aging and Disease(2023)10.14336/ad.2023.0812

N/A

0DataRank · unranked

10 citations

Sharvari Deshpande, Koji Kitazawa, Allison B. Herman, Joanna Bons, Jacob Rose +16 more

Substantial Downregulation of Mitochondrial and Peroxisomal Proteins during Acute Kidney Injury revealed by Data-Independent Acquisition Proteomics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.26.530107

N/A

0DataRank · unranked

3 citations

Anne C. Silva Barbosa, Joanna Bons, Jacob Rose, Katherine Pfister, Fabia Simona +8 more

Dicarboxylic acid supplementation protects from acute kidney injury via stimulation of renal peroxisomal activity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.31.543068

N/A

0DataRank · unranked

0 citations

Katherine Pfister, Takuto Chiba, Joanna Bons, Jacob Rose, Jordan B. Burton +11 more

Aging impairs the osteocytic regulation of collagen integrity and bone quality

Bone Research(2024)10.1038/s41413-023-00303-7

N/A

0DataRank · unranked

31 citations

Serra Kaya, Neha S. Dole, Nadja M. Maldonado Luna, Natalia Castillo, Ryan Potter +10 more

Dietary dicarboxylic acids provide a nonstorable alternative fat source that protects mice against obesity

Journal of Clinical Investigation(2024)10.1172/jci174186

N/A

0DataRank · unranked

26 citations

Bob B. Zhang, Yuxun Zhang, Sivakama S. Bharathi, Joanna Bons, Jacob Rose +14 more

Regulation of urea cycle by reversible high-stoichiometry lysine succinylation

Nature Metabolism(2024)10.1038/s42255-024-01005-y

N/A

0DataRank · unranked

21 citations

Jingqi Fang, Xueshu Xie, Chris Carrico, Jesse G. Meyer, Lei Wei +13 more

Sirt2 Regulates Liver Metabolism in a Sex-Specific Manner

Biomolecules(2024)10.3390/biom14091160

N/A

0DataRank · unranked

10 citations

Sivakama S. Bharathi, Keaton J. Solo, Joanna Bons, Jacob Rose, Birgit Schilling +2 more

Sirtuin-5 Is Recruited to Hepatic Peroxisomes in Mice Fed Dodecanedioic Acid but Has Little Impact on the Peroxisomal Succinylome

Biomolecules(2024)10.3390/biom14121508

N/A

0DataRank · unranked

2 citations

Bob B. Zhang, Sivakama S. Bharathi, Joanna Bons, Jacob Rose, Samah Shah +5 more

Sirt5 regulates chondrocyte metabolism and osteoarthritis development through protein lysine malonylation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.23.604872

N/A

0DataRank · unranked

3 citations

Anupama Binoy, Siqi Ren, T. Martino, Anna E. Miller, Craig R. G. Willis +8 more

Substrate Stiffness Dictates Unique Doxorubicin-induced Senescence-associated Secretory Phenotypes and Transcriptomic Signatures in Human Pulmonary Fibroblasts

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.18.623471

N/A

0DataRank · unranked

2 citations

Jacob Rose, Joanna Bons, Guo Li, Taylor R. Valentino, Fei Wu +13 more

Sirtuin‐5 Is Recruited to Hepatic Peroxisomes in Mice Fed Dodecanedioic Acid but Has Little Impact on the Peroxisomal Succinylome

Preprints.org(2024)10.20944/preprints202410.2196.v1

N/A

0DataRank · unranked

1 citations

Bob B. Zhang, Sivakama S. Bharathi, Joanna Bons, Jacob Rose, Samah Shah +5 more

A Comprehensive Multiomics Signature of Doxorubicin‐Induced Cellular Senescence in the Postmenopausal Human Ovary

Aging Cell(2025)10.1111/acel.70111

N/A

0DataRank · unranked

9 citations

Mark A. Watson, Bikem Soygur, Fei Wu, Joanna Bons, Hannah Anvari +14 more

Exosomes released from senescent cells and circulatory exosomes isolated from human plasma reveal aging-associated proteomic and lipid signatures

Aging(2025)10.18632/aging.206292

N/A

0DataRank · unranked

5 citations

Joanna Bons, Jacob Rose, Jessie R. Chappel, Rebecca L. Beres, Mark A. Watson +9 more

Simultaneous Affinity Enrichment of Two Post-Translational Modifications for Quantification and Site Localization

Journal of Visualized Experiments(2020)10.3791/60780

N/A

0DataRank · unranked

9 citations

Samah Shah, Anja Holtz, Jacob Rose, Nathan Basisty, Birgit Schilling +1 more

A multi-omics analysis of human fibroblasts overexpressing an Alu transposon reveals widespread disruptions in aging-associated pathways

GeroScience(2025)10.1007/s11357-025-02033-6

N/A

0DataRank · unranked

0 citations

Eyael Tewelde, Christina D. King, Joanna Bons, Samah Shah, Jacob Rose +4 more

Simultaneous Affinity Enrichment of Two Post-Translational Modifications for Quantification and Site Localization

Journal of Visualized Experiments(2020)10.3791/60780-v

N/A

0DataRank · unranked

4 citations

Samah Shah, Anja Holtz, Jacob Rose, Nathan Basisty, Birgit Schilling +1 more

Data‐independent acquisition and quantification of extracellular matrix from human lung in chronic inflammation‐associated carcinomas

PROTEOMICS(2022)10.1002/pmic.202200021

N/A

0DataRank · unranked

18 citations

Deng Pan, Samah Shah, Rosemary Bai, Chira Chen‐Tanyolac, Xianhong Wang +13 more

In‐depth analysis of the Sirtuin 5‐regulated mouse brain malonylome and succinylome using library‐free data‐independent acquisitions

PROTEOMICS(2022)10.1002/pmic.202100371

N/A

0DataRank · unranked

11 citations

Jacob Rose, Ran Zhang, Jordan B. Burton, Christopher Carrico, Eric Verdin +2 more

TurnoveR: A Skyline External Tool for Analysis of Protein Turnover in Metabolic Labeling Studies

Journal of Proteome Research(2022)10.1021/acs.jproteome.2c00173

N/A

0DataRank · unranked

8 citations

Nicholas Shulman, Cameron Wehrfritz, Alexandra N. Marsh, Samah Shah, Jacob Rose +9 more

Comprehensive proteomic quantification of bladder stone progression in a cystinuric mouse model using data-independent acquisitions

PLoS ONE(2022)10.1371/journal.pone.0250137

N/A

0DataRank · unranked

5 citations

Nathan Basisty, Tiffany Zee, Cameron Wehrfritz, Neelanjan Bose, Pierre‐Yves Desprez +4 more

Ketone body metabolism declines with age in mice in a sex-dependent manner

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.05.511032

N/A

0DataRank · unranked

16 citations

Mitsunori Nomura, Oishika Panda, Thelma Y. Garcia, Christina D. King, Jacob Rose +5 more