Francesco Beghini

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological SciencesMedicineEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

14.7Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Accessible, curated metagenomic data through ExperimentHub

Nature Methods(2017)10.1038/nmeth.4468

Top 2%

7.1DataRank

Top 2%570 citations

Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong +9 more

Papers

Driven by 13 papers — median percentile 93. Top paper: “Accessible, curated metagenomic data through ExperimentHub”.

Accessible, curated metagenomic data through ExperimentHub

Nature Methods(2017)10.1038/nmeth.4468

Top 2%

7.1DataRank

Top 2%570 citations

Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong +9 more

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Indice penale(2023)10.1038/s41587-023-01688-w

Top 4%

5.0DataRank

Top 4%1390 citations

Francesco Beghini, Fabio Cumbo, Lauren J. McIver, Kelsey N. Thompson, Moreno Zolfo +21 more

Accessible, curated metagenomic data through ExperimentHub

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/103085

Top 10%

2.0DataRank

Top 10%65 citations

Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong +9 more

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Nature Medicine(2019)10.1038/s41591-019-0405-7

N/A

1.0DataRank · unranked

1030 citations

Paolo Manghi, Francesco Asnicar, Edoardo Pasolli, Federica Armanini, Moreno Zolfo +36 more

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

Nature Communications(2020)10.1038/s41467-020-16366-7

N/A

1.0DataRank · unranked

855 citations

Andrew Maltez Thomas, Francesco Beghini, Claudia Mengoni, Serena Manara, Paolo Manghi +13 more

Reporting guidelines for human microbiome research: the STORMS checklist

Nature Medicine(2021)10.1038/s41591-021-01552-x

N/A

0.918DataRank · unranked

454 citations

Audrey Renson, Genomic Standards Consortium, Cesare Furlanello, Shaimaa Elsafoury, Ludwig Geistlinger +98 more

Meta-analysis of 22,710 human microbiome metagenomes defines an oral-to-gut microbial enrichment score and associations with host health and disease

Nature Communications(2025)10.1038/s41467-025-66888-1

Top 41%

0.461DataRank

Top 41%17 citations

Giacomo Antonello, Lucas Schiffer, Davide Golzato, Andres Wokaty, Francesco Beghini +32 more

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

(2021)10.52843/cassyni.d7bh25

N/A

0DataRank · unranked

5 citations

Francesco Beghini

Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases

Nature Medicine(2022)10.1038/s41591-022-01964-3

N/A

0DataRank · unranked

354 citations

Michal Punčochář, Nicolai Karcher, Serena Porcari, Federica Armanini, Francesco Asnicar +18 more

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

eLife(2021)10.7554/elife.65088

N/A

0DataRank · unranked

2321 citations

Lauren J. McIver, Aitor Blanco‐Míguez, Léonard Dubois, Francesco Asnicar, Sagun Maharjan +12 more

MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice

Cell Reports(2023)10.1016/j.celrep.2023.112464

N/A

0DataRank · unranked

45 citations

Aitor Blanco‐Míguez, Serena Manara, Amir Nabinejad, Fabio Cumbo, Francesco Beghini +19 more

Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages

Cell Reports(2024)10.1016/j.celrep.2024.114442

N/A

0DataRank · unranked

7 citations

Francesco Beghini, Marcus Alexander, Adarsh Singh, Rigoberto Matute Juárez, Ilana Brito +2 more

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.19.388223

N/A

0DataRank · unranked

145 citations

Lauren J. McIver, Aitor Blanco‐Míguez, Léonard Dubois, Francesco Asnicar, Sagun Maharjan +11 more

Francesco Beghini

Indexed papers

Top data-sharing exemplar

Papers