David D. Thomas

ORCID: 0000-0002-8822-2040

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 71 papers. Top paper: “The functional significance of redox-mediated intersubunit cross-linking in regulation of human type 2 ryanodine receptor”.

The functional significance of redox-mediated intersubunit cross-linking in regulation of human type 2 ryanodine receptor

Redox Biology(2020)10.1016/j.redox.2020.101729

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15 citations

Elisa Bovo, Robyn T. Rebbeck, Daniel Kahn, David D. Thomas, Rǎzvan L. Cornea +2 more

Sarcomere integrated biosensor detects myofilament-activating ligands in real time during twitch contractions in live cardiac muscle

Journal of Molecular and Cellular Cardiology(2020)10.1016/j.yjmcc.2020.07.012

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13 citations

Ashley A. Martin, Brian R. Thompson, David D. Thomas, Joseph M. Metzger, Anthony D. Vetter

Novel drug discovery platform for spinocerebellar ataxia, using fluorescence technology targeting β-III-spectrin

Journal of Biological Chemistry(2020)10.1074/jbc.ra120.015417

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11 citations

Anna Andrick, Sarah A. Denha, Bengt Svensson, Piyali Guhathakurta, David D. Thomas +3 more

Resolved Structural States of Calmodulin in Regulation of Skeletal Muscle Calcium Release

Biophysical Journal(2020)10.1016/j.bpj.2020.01.010

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12 citations

Yahor Savich, Rǎzvan L. Cornea, David D. Thomas, Megan R. McCarthy

Mechanical factors tune the sensitivity of mdx muscle to eccentric strength loss and its protection by antioxidant and calcium modulators

Skeletal Muscle(2020)10.1186/s13395-020-0221-2

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44 citations

Cory W. Baumann, Robyn T. Rebbeck, Samantha L. Yuen, William M. Southern, James S. Hodges +5 more

RyR1-targeted drug discovery pipeline integrating FRET-based high-throughput screening and human myofiber dynamic Ca2+ assays

Scientific Reports(2020)10.1038/s41598-020-58461-1

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37 citations

Daniel P. Singh, Kevyn A. Janicek, Donald M. Bers, David D. Thomas, Bradley S. Launikonis +2 more

Discovery of Small Molecule Inhibitors of Huntingtin Exon 1 Aggregation by FRET-Based High-Throughput Screening in Living Cells

ACS Chemical Neuroscience(2020)10.1021/acschemneuro.0c00226

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32 citations

Nitin Pandey, Colin Kin‐Wye Lim, Zhipeng Ding, Meixin Tao, David D. Thomas +3 more

Live-Cell Cardiac-Specific High-Throughput Screening Platform for Drug-Like Molecules That Enhance Ca2+ Transport

Cells(2020)10.3390/cells9051170

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28 citations

Evan Kleinboehl, Samantha L. Yuen, Lauren N. Roelike, Bengt Svensson, Andrew R. Thompson +3 more

Super-relaxed state of myosin in human skeletal muscle is fiber-type dependent

American Journal of Physiology-Cell Physiology(2020)10.1152/ajpcell.00396.2020

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28 citations

Aurora D. Foster, Mark S. Miller, Dawn A. Lowe, David D. Thomas, Lien A. Phung

Actin-binding compounds, previously discovered by FRET-based high-throughput screening, differentially affect skeletal and cardiac muscle

Journal of Biological Chemistry(2020)10.1074/jbc.ra120.014445

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8 citations

Lien A. Phung, Ewa Próchniewicz, Sarah Lichtenberger, Anna Wilson, David D. Thomas +1 more

Purification of sarcoplasmic reticulum vesicles from horse gluteal muscle

Analytical Biochemistry(2020)10.1016/j.ab.2020.113965

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4 citations

Christine B. Karim, Mariana Cocco, Samuel F. Carlson, David D. Thomas, Stephanie J. Valberg +1 more

Sarcolipin Exhibits Abundant RNA Transcription and Minimal Protein Expression in Horse Gluteal Muscle

Veterinary Sciences(2020)10.3390/vetsci7040178

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4 citations

Christine B. Karim, Sudeep Perumbakkam, Carrie J. Finno, Erica C. McKenzie, David D. Thomas +2 more

Met125 is essential for maintaining the structural integrity of calmodulin’s C-terminal domain

Scientific Reports(2020)10.1038/s41598-020-78270-w

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2 citations

Daniel K. Weber, Robyn T. Rebbeck, Rǎzvan L. Cornea, Gianluigi Veglia, David D. Thomas +1 more

Potent inhibitors of toxic alpha-synuclein oligomers identified via cellular time-resolved FRET biosensor

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.09.900845

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3 citations

Elly E. Liao, Mian Horvath, Malaney C. Young, Chih Hung Lo, Roland Brown +5 more

Actin-binding compounds, discovered by FRET-based high-throughput screening, differentially affect skeletal and cardiac muscle

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.19.104257

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1 citations

Lien A. Phung, Ewa Próchniewicz, Sarah Lichtenberger, Anna Wilson, David D. Thomas +1 more

Single-Polypeptide SERCA-Phospholamban Fused FRET Biosensor for High-throughput Cardiac-specific Drug Discovery

Biophysical Journal(2020)10.1016/j.bpj.2019.11.1771

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0 citations

Tory Schaaf, Samantha L. Yuen, Lauren N. Roelike, Bengt Svensson, Andrew R. Thompson +3 more

Actin-Binding Compounds, Discovered from Fret-Based High-Throughput Screening, Differentially Affect Skeletal and Cardiac Muscle

Biophysical Journal(2020)10.1016/j.bpj.2019.11.3213

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0 citations

Lien A. Phung, Sarah Lichtenberger, Ewa Próchniewicz, David D. Thomas, Piyali Guhathakurta

Actin-binding compounds that affect the kinetics of the interaction of cardiac myosin with actin

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.16.300517

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0 citations

David D. Thomas, Osha Roopnarine

The transmembrane domain of DWORF activates SERCA directly; P15 and W22 residues are essential

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.18.303644

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0 citations

Daniel R. Stroik, Samantha L. Yuen, Evan Kleinboehl, Rǎzvan L. Cornea, David D. Thomas +1 more

Super-relaxed state of myosin in human skeletal muscle is fiber-type dependent

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.24.311795

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0 citations

Aurora D. Foster, Mark S. Miller, Dawn A. Lowe, David D. Thomas, Lien A. Phung

High-Throughput Screening Yields Allosteric Inhibitors of Leaky RyRs for Therapeutic Development

Biophysical Journal(2020)10.1016/j.bpj.2019.11.3095

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0 citations

Gabrielle M. Evans, Kaja Rožman, Jacob Schwarz, Michael C. Wold, Marzena Baran +5 more

Allostery governs Cdk2 activation and differential recognition of CDK inhibitors

Nature Chemical Biology(2021)10.1038/s41589-020-00725-y

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72 citations

David J. Burban, Joseph M. Muretta, Andrew R. Thompson, Tiffany A. Engel, Damien M. Rasmussen +5 more

Direct detection of the myosin super-relaxed state and interacting-heads motif in solution

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.101157

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57 citations

Joseph M. Muretta, David D. Thomas, Sami Chu

Structural basis for allosteric control of the SERCA-Phospholamban membrane complex by Ca2+ and phosphorylation

eLife(2021)10.7554/elife.66226

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44 citations

U. Venkateswara Reddy, Songlin Wang, Erik K. Larsen, Tata Gopinath, Martin Gustavsson +5 more

Potent inhibitors of toxic alpha-synuclein identified via cellular time-resolved FRET biosensors

npj Parkinson s Disease(2021)10.1038/s41531-021-00195-6

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40 citations

Elly E. Liao, Mian Horvath, Prakriti Kalra, Karen Acosta, Malaney C. Young +11 more

The transmembrane peptide DWORF activates SERCA2a via dual mechanisms

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100412

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37 citations

Samantha L. Yuen, Daniel R. Stroik, Evan Kleinboehl, Rǎzvan L. Cornea, David D. Thomas +1 more

Defective internal allosteric network imparts dysfunctional ATP/substrate-binding cooperativity in oncogenic chimera of protein kinase A

Communications Biology(2021)10.1038/s42003-021-01819-6

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30 citations

Caitlin Walker, Adak Karamafrooz, Yingjie Wang, V. S. Manu, Fernando Porcelli +7 more

Cardiac myosin-binding protein C interaction with actin is inhibited by compounds identified in a high-throughput fluorescence lifetime screen

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100840

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15 citations

Piyali Guhathakurta, Victoria C. Lepak, Andrew R. Thompson, Rhye‐Samuel Kanassatega, Anna Wilson +3 more

Mechanistic analysis of actin-binding compounds that affect the kinetics of cardiac myosin–actin interaction

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100471

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5 citations

David D. Thomas, Osha Roopnarine

Sarcoplasmic Reticulum from Horse Gluteal Muscle Is Poised for Enhanced Calcium Transport

Veterinary Sciences(2021)10.3390/vetsci8120289

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6 citations

Bengt Svensson, Samuel F. Carlson, Zhenhui Chen, Rǎzvan L. Cornea, David D. Thomas +2 more

Integrated Phosphoproteomics for Identifying Substrates of Human Protein Kinase A (PRKACA) and Its Oncogenic Mutant DNAJB1–PRKACA

Journal of Proteome Research(2021)10.1021/acs.jproteome.1c00500

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8 citations

Jack Brennan, David D. Thomas, Laurie L. Parker, Adak Karamafrooz

Cardiac ryanodine receptor N-terminal region biosensors identify novel inhibitors via FRET-based high-throughput screening

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.101412

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4 citations

Daniel P. Singh, Christopher Y. Ko, Roman Nikolaienko, Siobhan M. Wong King Yuen, Jacob Schwarz +12 more

Direct detection of the myosin super-relaxed state and interacting heads motif in solution

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.29.450383

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1 citations

Joseph M. Muretta, David D. Thomas, Sami Chu

Cardiac RyR N-terminal region biosensors for FRET-based high-throughput screening

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.07.430153

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0 citations

Siobhan M. Wong King Yuen, Jacob Schwarz, Levy M. Treinen, Ching‐Chieh Tung, Robyn T. Rebbeck +7 more

15N Bifunctional Spin Label: Pushing the Limits of Angular Resolution of Muscle Myosin

Biophysical Journal(2021)10.1016/j.bpj.2020.11.678

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0 citations

Megan R. McCarthy, Stefan Stoll, David D. Thomas, Yahor Savich

High-Throughput Screening and Drug Development to Fix RyR Pathology

Biophysical Journal(2021)10.1016/j.bpj.2020.11.1089

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0 citations

Kaja Rožman, Gabrielle M. Evans, Jacob Schwarz, Marzena Baran, Courtney C. Aldrich +4 more

High-throughput screen using fluorescence lifetime detects compounds that modulate myosin-binding protein C interactions with actin

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.24.436879

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0 citations

Piyali Guhathakurta, Victoria C. Lepak, Andrew R. Thompson, Rhye‐Samuel Kanassatega, Anna Wilson +3 more

A rare human centenarian variant of SIRT6 enhances genome stability and interaction with Lamin A

The EMBO Journal(2022)10.15252/embj.2021110393

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66 citations

Jiping Yang, Jonathan Gigas, Eric J. Earley, Eric Hillpot, Lei Zhang +27 more

Synergistic FRET assays for drug discovery targeting RyR2 channels

Journal of Molecular and Cellular Cardiology(2022)10.1016/j.yjmcc.2022.04.002

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14 citations

Kenneth S. Ginsburg, Christopher Y. Ko, Anna Fasoli, Katherine Rusch, George F. Cai +5 more

New N-aryl-N-alkyl-thiophene-2-carboxamide compound enhances intracellular Ca2+ dynamics by increasing SERCA2a Ca2+ pumping

Biophysical Journal(2022)10.1016/j.bpj.2022.12.002

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9 citations

Elisa Bovo, Samantha L. Yuen, Levy M. Treinen, Kaja Berg, Courtney C. Aldrich +4 more

FRET-based trilateration resolves distinct structural states and transitions of calmodulin bound to ryanodine receptors

Biophysical Journal(2022)10.1016/j.bpj.2021.11.864

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0 citations

Robyn T. Rebbeck, Jingyan Zhang, Donald M. Bers, David D. Thomas, Rǎzvan L. Cornea +1 more

FRET assays for RyR-targeted drug discovery platforms

Biophysical Journal(2022)10.1016/j.bpj.2021.11.1857

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0 citations

Kaja Berg, Gabrielle M. Evans, Jacob Schwarz, Jake R. Trask, Lindsey M. McGurran +5 more

Identification of β-III-spectrin actin-binding modulators for treatment of spinocerebellar ataxia

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.08.515660

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0 citations

Robyn T. Rebbeck, Sarah A. Denha, Amanda R. Keller, Anna L. Carter, Alexandra E. Atang +5 more

Cardiac calcium regulation in human induced pluripotent stem cell cardiomyocytes: Implications for disease modeling and maturation

Frontiers in Cell and Developmental Biology(2023)10.3389/fcell.2022.986107

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26 citations

Philip A. Bidwell, Michaela Dora, David D. Thomas, Forum Kamdar, Patrick Erñst

Nimesulide, a COX-2 inhibitor, sensitizes pancreatic cancer cells to TRAIL-induced apoptosis by promoting DR5 clustering †

Cancer Biology & Therapy(2023)10.1080/15384047.2023.2176692

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25 citations

Malaney C. Young, Elly E. Liao, Chih Hung Lo, Evan Huber, MaryJane Been +3 more

Fluorescence lifetime FRET assay for live-cell high-throughput screening of the cardiac SERCA pump yields multiple classes of small-molecule allosteric modulators

Scientific Reports(2023)10.1038/s41598-023-37704-x

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18 citations

Samantha L. Yuen, Andrew R. Thompson, Lauren N. Roelike, Robyn T. Rebbeck, Philip A. Bidwell +4 more

Regulation of cardiac calcium signaling by newly identified calcium pump modulators

Biochemical and Biophysical Research Communications(2023)10.1016/j.bbrc.2023.149136

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7 citations

Robyn T. Rebbeck, Osha Roopnarine, Rǎzvan L. Cornea, David D. Thomas, Aleksey V. Zima +1 more

Interaction of DWORF with SERCA and PLB as determined by EPR spectroscopy

Biochemical and Biophysical Research Communications(2023)10.1016/j.bbrc.2023.01.041

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13 citations

Osha Roopnarine, Rǎzvan L. Cornea, David D. Thomas, Mark Rustad

Drug discovery for heart failure targeting myosin-binding protein C

Journal of Biological Chemistry(2023)10.1016/j.jbc.2023.105369

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10 citations

Piyali Guhathakurta, Andrew R. Thompson, Victoria C. Lepak, Anna L. Carter, Jennifer J. Thomas +3 more

Early-phase drug discovery of β-III-spectrin actin-binding modulators for treatment of spinocerebellar ataxia type 5

Journal of Biological Chemistry(2023)10.1016/j.jbc.2023.102956

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7 citations

Robyn T. Rebbeck, Sarah A. Denha, Amanda R. Keller, Anna L. Carter, Alexandra E. Atang +5 more

Structural Dynamics of Protein Interactions Using Site-Directed Spin Labeling of Cysteines to Measure Distances and Rotational Dynamics with EPR Spectroscopy

Applied Magnetic Resonance(2023)10.1007/s00723-023-01623-x

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7 citations

David D. Thomas, Osha Roopnarine

RyR2 Binding of an Antiarrhythmic Cyclic Depsipeptide Mapped Using Confocal Fluorescence Lifetime Detection of FRET

ACS Chemical Biology(2023)10.1021/acschembio.3c00376

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6 citations

Jacob Schwarz, Abigail N. Smith, Bengt Svensson, Daniel J. Blackwell, Taylor A. Phillips +11 more

Indirubin Inhibits TRAIL-Induced Activation of Death Receptor 5 in Jurkat Cells

Natural Product Communications(2023)10.1177/1934578x221144580

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4 citations

Nagamani Vunnam, Robyn T. Rebbeck, Samantha L. Yuen, David D. Thomas, Jonathan N. Sachs +1 more

Molecular Mechanism of a FRET Biosensor for the Cardiac Ryanodine Receptor Pathologically Leaky State

International Journal of Molecular Sciences(2023)10.3390/ijms241612547

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4 citations

Florentin R. Nitu, Robyn T. Rebbeck, Lindsey M. McGurran, Tetsuro Oda, David D. Thomas +3 more

Molecular Mechanism of a FRET Biosensor for the Cardiac Ryanodine Receptor Pathologically Leaky State

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.07.548138

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1 citations

Florentin R. Nitu, Robyn T. Rebbeck, Lindsey M. McGurran, Tetsuro Oda, David D. Thomas +3 more

FRET assay for live-cell high-throughput screening of the cardiac SERCA pump yields multiple classes of small-molecule allosteric modulators

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.22.529557

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0 citations

Samantha L. Yuen, Andrew R. Thompson, Lauren N. Roelike, Robyn T. Rebbeck, Philip A. Bidwell +4 more

FRET assay for live-cell high-throughput screening of the cardiac SERCA pump yields multiple classes of small-molecule allosteric modulators

Research Square(2023)10.21203/rs.3.rs-2596384/v1

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0 citations

Samantha L. Yuen, Andrew R. Thompson, Lauren N. Roelike, Robyn T. Rebbeck, Phillip A. Bidwell +4 more

RyR2 Binding of an Antiarrhythmic Cyclic Depsipeptide Mapped Using Confocal Fluorescence Lifetime Detection of FRET

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.22.546083

N/A

0DataRank · unranked

0 citations

Jacob Schwarz, Abigail N. Smith, Bengt Svensson, Daniel J. Blackwell, Taylor A. Phillips +11 more

Kinetics and mapping of Ca-driven calmodulin conformations on skeletal and cardiac muscle ryanodine receptors

Nature Communications(2024)10.1038/s41467-024-48951-5

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7 citations

Bengt Svensson, Jingyan Zhang, Montserrat Samsó, David D. Thomas, Donald M. Bers +2 more

A FRET assay to quantitate levels of the human β-cardiac myosin interacting heads motif based on its near-atomic resolution structure

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.05.626936

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3 citations

Piyali Guhathakurta, Neha Nandwani, Aminah Dawood, Seiji Yakota, Osha Roopnarine +4 more

Small-molecule allosteric modulators of SERCA2a for pharmaceutical therapy of heart failure

Biophysical Journal(2024)10.1016/j.bpj.2023.11.2087

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0 citations

Samantha L. Yuen, Elisa Bovo, Marzena Baran, Andrew R. Thompson, Robyn T. Rebbeck +4 more

Calcium channel-targeted modulators identified by FRET-based high-throughput screening

Biophysical Journal(2024)10.1016/j.bpj.2023.11.2777

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0 citations

Benjamin D. Van Setters, Marzena Brinkmann, Andrew R. Thompson, Courtney C. Aldrich, Donald M. Bers +3 more

A FRET assay to monitor different structural states of human β-cardiac myosin including the interacting-heads motif

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2504562122

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11 citations

Piyali Guhathakurta, Neha Nandwani, Aminah Dawood, Seiji Yokota, Osha Roopnarine +4 more

Large-scale high-throughput screen for cardiac ryanodine receptor targeted therapeutics

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110951

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1 citations

Elisa Bovo, Jonathan Solberg, Marzena Brinkmann, Levy M. Treinen, Andrew R. Thompson +9 more

Aurora A binds to the transactivation domain of c-Myc and recognizes the phosphorylated N-terminal degron motif

Biochemical Journal(2025)10.1042/bcj20240726

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1 citations

Katie Dunleavy, Kaitlin Beel, Tiffany A. Engel, Andrew R. Thompson, Felix L. John +3 more

Myosin relaxation states in skeletal muscle fibers of rats and mice: Effects of sex and adiposity

Physiological Reports(2025)10.14814/phy2.70336

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1 citations

Lien A. Phung, Luke A. Weyrauch, Philip C. Woods, Shawna L. McMillin, B. Patrick Sullivan +9 more

Kinetics insight into the roles of the N- and C-lobes of calmodulin in RyR1 channel regulation

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.108258

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1 citations

Levy M. Treinen, Skylar J Mast, Megan R. McCarthy, Bengt Svensson, David D. Thomas +2 more

BPS2025 - Calcium channel and transporter targeted modulators identified by FRET-based high-throughput screening

Biophysical Journal(2025)10.1016/j.bpj.2024.11.648

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0 citations

Samantha L. Yuen, Michael E. Fealey, Marzena Brinkmann, Benjamin D. Van Setters, Andrew R. Thompson +5 more

BPS2025 - Live-cell FRET biosensors for high-throughput screening targeting the SERCA2a-DWORF complex

Biophysical Journal(2025)10.1016/j.bpj.2024.11.1623

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0 citations

Ingrid Hayden, Samantha L. Yuen, Andrew R. Thompson, Bengt Svensson, Osha Roopnarine +3 more

BPS2025 - SERCA2a-targeted drugs for treatment of heart failure: Medicinal chemistry development of a compound identified via high-throughput screening

Biophysical Journal(2025)10.1016/j.bpj.2024.11.1614

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0 citations

Marzena Brinkmann, Samantha L. Yuen, Tien Yin Wong, Kaja Berg, Rǎzvan L. Cornea +4 more

Development of activators for SERCA2a for heart failure treatments

European Journal of Medicinal Chemistry(2025)10.1016/j.ejmech.2025.118408

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0 citations

Tsung-Yun Wong, Osha Roopnarine, Samantha L. Yuen, Kaja Berg, Rǎzvan L. Cornea +4 more